Wall clock time and date at job start Mon Mar 30 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46960 * 110.99996 * 293.79758 * 10 9 7 12 12 C 1.53050 * 109.36394 * 176.81475 * 11 10 9 13 13 N 1.46958 * 109.36635 * 58.40200 * 12 11 10 14 14 C 1.46895 * 110.99921 * 176.81289 * 13 12 11 15 15 C 1.53004 * 109.47179 * 293.79767 * 14 13 12 16 16 H 1.08990 * 109.47822 * 60.02858 * 15 14 13 17 17 C 1.53097 * 109.47855 * 180.02562 * 15 14 13 18 18 C 1.53181 * 109.15813 * 177.59070 * 17 15 14 19 19 C 1.53176 * 109.03659 * 303.01732 * 18 17 15 20 20 C 1.53098 * 109.16282 * 56.98486 * 19 18 17 21 21 O 1.42896 * 109.47875 * 300.00136 * 15 14 13 22 22 C 1.46960 * 110.87909 * 300.67915 * 13 12 11 23 23 C 1.46958 * 110.99921 * 170.00034 * 10 9 7 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.48987 * 296.77749 * 11 10 9 28 28 H 1.09001 * 109.49037 * 56.84581 * 11 10 9 29 29 H 1.08999 * 109.48818 * 298.43647 * 12 11 10 30 30 H 1.09000 * 109.48942 * 178.37184 * 12 11 10 31 31 H 1.08997 * 109.47602 * 53.79888 * 14 13 12 32 32 H 1.09003 * 109.46969 * 173.79868 * 14 13 12 33 33 H 1.08993 * 109.52147 * 297.49847 * 17 15 14 34 34 H 1.08996 * 109.51981 * 57.69001 * 17 15 14 35 35 H 1.08996 * 109.54057 * 183.15264 * 18 17 15 36 36 H 1.08995 * 109.54148 * 62.88803 * 18 17 15 37 37 H 1.08991 * 109.52617 * 297.07385 * 19 18 17 38 38 H 1.09004 * 109.52041 * 176.88698 * 19 18 17 39 39 H 1.08997 * 109.47895 * 182.40718 * 20 19 18 40 40 H 1.09001 * 109.48728 * 62.37272 * 20 19 18 41 41 H 1.09000 * 109.48987 * 299.35669 * 22 13 12 42 42 H 1.09001 * 109.49037 * 179.28836 * 22 13 12 43 43 H 1.09000 * 109.48990 * 303.15665 * 23 10 9 44 44 H 1.08999 * 109.48701 * 63.22086 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9697 -3.6567 -1.2530 12 6 4.0052 -4.7814 -1.1800 13 7 3.3203 -6.0596 -0.9418 14 6 4.2749 -7.1761 -0.9405 15 6 4.8689 -7.3408 -2.3409 16 1 5.3835 -6.4238 -2.6275 17 6 5.8634 -8.5048 -2.3399 18 6 6.4082 -8.7017 -3.7580 19 6 5.2361 -8.9393 -4.7150 20 6 4.2659 -7.7585 -4.6242 21 8 3.8211 -7.6111 -3.2742 22 6 2.5563 -6.0186 0.3130 23 6 1.5208 -4.8939 0.2400 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.2912 -3.8406 -2.0860 28 1 3.4777 -2.7037 -1.4008 29 1 4.7001 -4.5836 -0.3639 30 1 4.5535 -4.8325 -2.1207 31 1 5.0742 -6.9700 -0.2287 32 1 3.7607 -8.0935 -0.6538 33 1 6.6863 -8.2802 -1.6614 34 1 5.3591 -9.4144 -2.0140 35 1 7.0744 -9.5642 -3.7761 36 1 6.9552 -7.8104 -4.0654 37 1 4.7193 -9.8577 -4.4371 38 1 5.6105 -9.0254 -5.7351 39 1 3.4083 -7.9421 -5.2715 40 1 4.7721 -6.8467 -4.9412 41 1 3.2348 -5.8347 1.1460 42 1 2.0483 -6.9716 0.4608 43 1 0.9725 -4.8428 1.1807 44 1 0.8259 -5.0917 -0.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611176150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:02 Heat of formation + Delta-G solvation = -71.066046 kcal Electronic energy + Delta-G solvation = -21389.548423 eV Core-core repulsion = 18340.170272 eV Total energy + Delta-G solvation = -3049.378151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74578 -39.75768 -36.89249 -34.85352 -34.48226 -32.71173 -31.91068 -29.76312 -27.63263 -25.99437 -24.84306 -24.67792 -23.61872 -22.44376 -21.10196 -20.72555 -18.93907 -17.38022 -17.27895 -16.95297 -16.09663 -15.84064 -15.79298 -15.72056 -15.63626 -15.33951 -15.19993 -14.83374 -14.28349 -13.88571 -13.60087 -13.45137 -13.36058 -13.14577 -12.80242 -12.74790 -12.46421 -12.29809 -12.21820 -12.02194 -11.92628 -11.83282 -11.74233 -11.47748 -11.05448 -10.78676 -10.58686 -10.27459 -9.32328 -9.15034 -8.70466 -6.41036 1.52688 1.62453 1.80466 2.55163 2.78567 2.94521 3.09739 3.17517 3.77308 3.87593 3.94022 3.98413 4.06380 4.10455 4.15994 4.24122 4.29080 4.33794 4.41935 4.52696 4.54528 4.60212 4.70548 4.74730 4.76076 4.81475 4.86169 4.90397 4.91834 4.98102 5.02955 5.08651 5.09426 5.13758 5.20335 5.39964 5.73126 5.91365 6.01992 6.11095 6.34001 6.38292 6.45892 6.60523 7.40161 8.68452 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030760 B = 0.003791 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.064358 B = 7383.446456 C = 7715.948521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.126 2.874 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.282 1.282 7 C -0.599 4.599 8 H 0.056 0.944 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.072 3.928 12 C 0.073 3.927 13 N -0.543 5.543 14 C 0.065 3.935 15 C 0.093 3.907 16 H 0.050 0.950 17 C -0.145 4.145 18 C -0.121 4.121 19 C -0.151 4.151 20 C 0.051 3.949 21 O -0.387 6.387 22 C 0.072 3.928 23 C 0.053 3.947 24 H 0.252 0.748 25 H 0.000 1.000 26 H -0.048 1.048 27 H 0.010 0.990 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.335 -19.600 -6.450 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.235 4.235 3 Si 0.946 3.054 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.637 4.637 8 H 0.074 0.926 9 C 0.067 3.933 10 N -0.262 5.262 11 C -0.057 4.057 12 C -0.055 4.055 13 N -0.268 5.268 14 C -0.063 4.063 15 C 0.035 3.965 16 H 0.068 0.932 17 C -0.183 4.183 18 C -0.159 4.159 19 C -0.189 4.189 20 C -0.026 4.026 21 O -0.306 6.306 22 C -0.056 4.056 23 C -0.076 4.076 24 H 0.062 0.938 25 H 0.018 0.982 26 H -0.030 1.030 27 H 0.028 0.972 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 13.950 -18.006 -6.387 23.656 hybrid contribution -0.319 -1.451 -0.120 1.490 sum 13.631 -19.457 -6.507 24.631 Atomic orbital electron populations 1.70897 1.07978 1.29605 1.49055 1.27497 0.96518 1.06822 0.92694 0.82832 0.74074 0.70620 0.77853 1.19702 1.19289 1.20794 1.22284 0.94844 0.92053 1.54471 0.92620 1.19525 0.90791 0.90483 0.92457 1.62163 1.26771 1.02800 1.34500 1.21942 0.95696 0.98513 0.89504 1.22069 0.94528 0.87981 1.00955 1.62065 1.26828 1.03244 1.34695 1.22188 0.94677 0.94253 0.95145 1.22168 0.88274 0.96968 0.89074 0.93167 1.22153 0.99005 0.98638 0.98507 1.21596 0.97547 1.02701 0.94046 1.22160 0.96924 0.98778 1.01009 1.22697 0.98926 0.97417 0.83514 1.88035 1.33413 1.92076 1.17093 1.22058 0.95347 0.97947 0.90209 1.22199 0.95915 0.89614 0.99839 0.93837 0.98189 1.03031 0.97211 0.91495 0.94262 0.89548 0.92121 0.89460 0.89649 0.90884 0.89990 0.91754 0.91348 0.89564 0.88875 0.93650 0.94024 0.88467 0.90910 0.96442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.56 13.65 21.45 0.29 -59.27 16 2 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 3 Si 1.13 51.32 29.90 68.60 2.05 53.37 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.60 -35.40 8.47 25.60 0.22 -35.18 16 8 H 0.06 3.25 7.13 -2.91 -0.02 3.22 16 9 C 0.19 10.88 4.03 85.56 0.34 11.23 16 10 N -0.54 -25.01 4.70 -900.27 -4.23 -29.25 16 11 C 0.07 3.06 5.43 86.31 0.47 3.53 16 12 C 0.07 2.38 5.41 86.31 0.47 2.84 16 13 N -0.54 -16.37 4.58 -895.71 -4.10 -20.47 16 14 C 0.06 1.46 4.65 86.31 0.40 1.86 16 15 C 0.09 1.97 2.52 30.63 0.08 2.05 16 16 H 0.05 1.12 6.49 -2.39 -0.02 1.10 16 17 C -0.14 -2.18 5.42 30.69 0.17 -2.02 16 18 C -0.12 -1.59 6.03 30.71 0.19 -1.41 16 19 C -0.15 -2.14 6.14 30.69 0.19 -1.95 16 20 C 0.05 0.99 6.84 72.01 0.49 1.48 16 21 O -0.39 -9.90 10.27 -148.98 -1.53 -11.43 16 22 C 0.07 2.20 5.61 86.31 0.48 2.68 16 23 C 0.05 2.06 5.61 86.31 0.48 2.54 16 24 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 25 H 0.00 0.01 7.89 -2.39 -0.02 -0.01 16 26 H -0.05 -2.90 7.99 -2.38 -0.02 -2.92 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.07 3.05 6.79 -2.39 -0.02 3.03 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.53 6.34 -2.39 -0.02 2.51 16 31 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 32 H 0.09 1.84 8.03 -2.39 -0.02 1.82 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 2.47 8.07 -2.39 -0.02 2.45 16 43 H 0.07 2.75 8.07 -2.39 -0.02 2.73 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -70.02 335.88 -2.04 -72.07 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.04 Total: 9.13 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.44 Total: -14.14 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -8.04 Total: -108.99 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.53 Total: -11.43 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -70.02 -2.04 -72.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.000 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds