Wall clock time and date at job start Mon Mar 30 2020 01:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47254 * 90.00516 * 3 2 1 5 5 H 1.48507 * 109.47179 * 210.00473 * 3 2 1 6 6 H 1.48503 * 109.47274 * 330.00252 * 3 2 1 7 7 C 1.38813 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00328 * 18.72341 * 7 2 1 9 9 N 1.36936 * 119.99815 * 198.72140 * 7 2 1 10 10 C 1.46931 * 120.63067 * 30.81366 * 9 7 2 11 11 C 1.53631 * 108.54198 * 126.36612 * 10 9 7 12 12 C 1.53047 * 109.24018 * 54.85812 * 11 10 9 13 13 N 1.46895 * 109.45689 * 178.48801 * 12 11 10 14 14 C 1.46896 * 111.00184 * 275.06656 * 13 12 11 15 15 C 1.53000 * 109.47219 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.52598 * 55.12403 * 15 14 13 17 17 C 1.53176 * 109.52365 * 175.31951 * 15 14 13 18 18 C 1.53183 * 109.03766 * 176.88908 * 17 15 14 19 19 C 1.53096 * 109.15852 * 303.01360 * 18 17 15 20 20 O 1.42903 * 109.41562 * 57.61048 * 19 18 17 21 21 C 1.42904 * 114.09505 * 298.84150 * 20 19 18 22 22 C 1.53041 * 109.53799 * 298.50913 * 12 11 10 23 23 C 1.46926 * 120.63144 * 211.09268 * 9 7 2 24 24 H 0.97001 * 120.00494 * 174.95540 * 1 2 3 25 25 H 1.08998 * 109.58514 * 246.19958 * 10 9 7 26 26 H 1.09003 * 109.58399 * 6.62546 * 10 9 7 27 27 H 1.09000 * 109.63497 * 294.86629 * 11 10 9 28 28 H 1.08999 * 109.45475 * 174.73742 * 11 10 9 29 29 H 1.08997 * 109.45059 * 58.52349 * 12 11 10 30 30 H 1.00900 * 111.00111 * 151.11215 * 13 12 11 31 31 H 1.08995 * 109.47140 * 300.00419 * 14 13 12 32 32 H 1.09002 * 109.46892 * 60.00133 * 14 13 12 33 33 H 1.09012 * 109.53907 * 296.74934 * 17 15 14 34 34 H 1.08997 * 109.54832 * 57.01238 * 17 15 14 35 35 H 1.09003 * 109.52157 * 183.11299 * 18 17 15 36 36 H 1.08994 * 109.57319 * 62.95072 * 18 17 15 37 37 H 1.09000 * 109.47800 * 297.62793 * 19 18 17 38 38 H 1.08997 * 109.47881 * 177.59628 * 19 18 17 39 39 H 1.08994 * 109.48364 * 301.17374 * 21 20 19 40 40 H 1.09004 * 109.47667 * 181.14155 * 21 20 19 41 41 H 1.09004 * 109.49628 * 301.41717 * 22 12 11 42 42 H 1.08995 * 109.49721 * 181.31973 * 22 12 11 43 43 H 1.09003 * 109.58802 * 353.37372 * 23 9 7 44 44 H 1.08997 * 109.58881 * 113.66103 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5477 1.4401 -0.7002 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5130 -2.1126 -0.3012 9 7 3.3252 -1.2338 0.3801 10 6 3.8392 -0.2838 1.3762 11 6 4.5288 -1.0766 2.4970 12 6 5.5974 -1.9868 1.8870 13 7 6.2846 -2.7205 2.9580 14 6 7.3779 -1.9208 3.5264 15 6 8.0687 -2.7166 4.6356 16 1 8.3960 -3.6796 4.2435 17 6 9.2804 -1.9330 5.1494 18 6 9.9173 -2.7025 6.3108 19 6 8.8661 -2.9273 7.4009 20 8 7.7532 -3.6338 6.8492 21 6 7.0890 -2.9409 5.7905 22 6 4.9367 -2.9817 0.9300 23 6 4.2503 -2.2142 -0.2043 24 1 -0.4851 -0.8368 -0.0739 25 1 4.5570 0.3874 0.9047 26 1 3.0129 0.2940 1.7905 27 1 3.7919 -1.6830 3.0236 28 1 4.9970 -0.3840 3.1964 29 1 6.3201 -1.3818 1.3397 30 1 6.6229 -3.6115 2.6266 31 1 8.1002 -1.6854 2.7448 32 1 6.9749 -0.9960 3.9392 33 1 10.0079 -1.8183 4.3456 34 1 8.9594 -0.9505 5.4953 35 1 10.7472 -2.1253 6.7185 36 1 10.2835 -3.6650 5.9538 37 1 8.5306 -1.9645 7.7863 38 1 9.3021 -3.5115 8.2112 39 1 6.7302 -1.9783 6.1549 40 1 6.2447 -3.5350 5.4408 41 1 4.1958 -3.5701 1.4714 42 1 5.6951 -3.6447 0.5139 43 1 3.6955 -2.9105 -0.8332 44 1 4.9995 -1.6974 -0.8041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611439183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:30 Heat of formation + Delta-G solvation = -42.824744 kcal Electronic energy + Delta-G solvation = -21307.442122 eV Core-core repulsion = 18259.288606 eV Total energy + Delta-G solvation = -3048.153516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66440 -38.23169 -35.79278 -33.89318 -32.50431 -31.33176 -30.32707 -29.26849 -25.69803 -25.16055 -23.81021 -22.87913 -21.93201 -20.98606 -20.32687 -19.30193 -17.29948 -16.57162 -16.19623 -15.54833 -15.13802 -14.95451 -14.61880 -14.50534 -14.18614 -13.67403 -13.59488 -13.37288 -12.87103 -12.78233 -12.66251 -12.29309 -12.02023 -11.86621 -11.47238 -11.39496 -11.15688 -11.00423 -10.73172 -10.68928 -10.50673 -10.40567 -9.84285 -9.78668 -9.65197 -9.56424 -9.08984 -8.48863 -8.28730 -7.01663 -6.20499 -3.32094 3.41119 3.54324 3.70459 3.75388 4.11170 4.52213 4.58235 4.59957 4.69480 4.77046 4.97954 5.04423 5.16829 5.25644 5.26753 5.35751 5.41329 5.45566 5.53871 5.56501 5.57827 5.67031 5.73052 5.76776 5.80637 5.92090 6.03693 6.11082 6.11766 6.19915 6.31033 6.39372 6.42960 6.63017 6.69711 6.79757 7.00021 7.07487 7.25384 7.50073 8.07342 8.48700 9.09964 9.63539 10.24766 11.17087 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033980 B = 0.003822 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.817549 B = 7324.194731 C = 7482.080365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.016 4.016 3 Si 1.068 2.932 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.300 1.300 7 C -0.342 4.342 8 H 0.064 0.936 9 N -0.605 5.605 10 C 0.124 3.876 11 C -0.118 4.118 12 C 0.096 3.904 13 N -0.687 5.687 14 C 0.065 3.935 15 C -0.118 4.118 16 H 0.076 0.924 17 C -0.118 4.118 18 C -0.154 4.154 19 C 0.058 3.942 20 O -0.386 6.386 21 C 0.073 3.927 22 C -0.134 4.134 23 C 0.149 3.851 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.336 0.664 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.376 -4.626 10.771 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.218 4.218 3 Si 0.900 3.100 4 H -0.222 1.222 5 H -0.213 1.213 6 H -0.228 1.228 7 C -0.471 4.471 8 H 0.081 0.919 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.158 4.158 12 C -0.012 4.012 13 N -0.318 5.318 14 C -0.064 4.064 15 C -0.137 4.137 16 H 0.094 0.906 17 C -0.156 4.156 18 C -0.192 4.192 19 C -0.019 4.019 20 O -0.305 6.305 21 C -0.004 4.004 22 C -0.174 4.174 23 C 0.022 3.978 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.154 0.846 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 19.641 -2.991 11.354 22.883 hybrid contribution 1.074 -1.434 -0.904 2.007 sum 20.715 -4.425 10.450 23.620 Atomic orbital electron populations 1.70892 1.06066 1.29978 1.49384 1.26256 0.96641 1.01276 0.97585 0.83719 0.74594 0.75703 0.75959 1.22163 1.21260 1.22777 1.20229 0.85683 0.94961 1.46269 0.91857 1.44339 1.07072 1.37628 1.43872 1.21473 0.96940 0.92281 0.89468 1.22090 0.97407 0.97988 0.98266 1.21443 0.94877 0.94812 0.90116 1.60572 1.28567 1.06314 1.36370 1.21960 0.91951 0.97027 0.95497 1.21791 0.95766 0.99673 0.96503 0.90568 1.21621 0.97156 0.98867 0.97992 1.22174 0.98736 1.01276 0.97029 1.22549 0.87072 0.96969 0.95270 1.87951 1.44755 1.45986 1.51772 1.22616 0.94493 0.97584 0.85678 1.22204 0.99497 0.97661 0.98001 1.20891 0.92294 0.91871 0.92746 0.92719 0.96000 0.90778 0.91249 0.93309 0.94586 0.84597 0.95277 0.90851 0.91590 0.91658 0.91057 0.91166 0.93364 0.89251 0.93372 0.87500 0.91244 0.93223 0.92209 0.96408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.04 13.70 55.49 0.76 -28.28 16 2 C -0.02 -0.48 5.24 -17.43 -0.09 -0.57 16 3 Si 1.07 26.84 24.73 -169.99 -4.20 22.64 16 4 H -0.29 -6.93 6.56 56.52 0.37 -6.55 16 5 H -0.29 -6.89 6.80 56.52 0.38 -6.50 16 6 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.34 -9.80 9.88 -15.06 -0.15 -9.95 16 8 H 0.06 1.93 8.06 -52.49 -0.42 1.51 16 9 N -0.60 -14.77 2.72 -172.04 -0.47 -15.24 16 10 C 0.12 2.75 4.23 -3.48 -0.01 2.74 16 11 C -0.12 -2.15 5.61 -26.38 -0.15 -2.30 16 12 C 0.10 1.52 2.45 -67.67 -0.17 1.36 16 13 N -0.69 -8.90 5.81 -106.69 -0.62 -9.52 16 14 C 0.07 0.73 4.88 -3.83 -0.02 0.71 16 15 C -0.12 -1.17 2.53 -90.48 -0.23 -1.40 16 16 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.12 -0.99 5.31 -26.55 -0.14 -1.14 16 18 C -0.15 -1.18 6.14 -26.59 -0.16 -1.35 16 19 C 0.06 0.51 6.84 37.21 0.25 0.76 16 20 O -0.39 -4.53 10.77 -35.23 -0.38 -4.91 16 21 C 0.07 0.81 5.98 37.21 0.22 1.03 16 22 C -0.13 -2.23 5.36 -26.61 -0.14 -2.37 16 23 C 0.15 3.02 6.51 -3.71 -0.02 3.00 16 24 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 25 H 0.02 0.47 7.10 -51.93 -0.37 0.11 16 26 H 0.07 1.79 4.76 -51.93 -0.25 1.54 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.05 0.80 7.42 -51.93 -0.39 0.42 16 29 H 0.04 0.58 7.80 -51.93 -0.40 0.17 16 30 H 0.34 3.97 8.33 -39.29 -0.33 3.64 16 31 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 32 H 0.07 0.88 7.41 -51.93 -0.38 0.49 16 33 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.11 1.30 7.83 -51.93 -0.41 0.89 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -30.96 330.25 -8.79 -39.75 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.05 Total: 0.06 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.81 Total: -9.48 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.33 Total: -53.04 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.20 Total: 22.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.96 -8.79 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.077 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds