Wall clock time and date at job start Mon Mar 30 2020 01:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47254 * 90.00516 * 3 2 1 5 5 H 1.48507 * 109.47179 * 210.00473 * 3 2 1 6 6 H 1.48503 * 109.47274 * 330.00252 * 3 2 1 7 7 C 1.38813 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00328 * 18.72341 * 7 2 1 9 9 N 1.36936 * 119.99815 * 198.72140 * 7 2 1 10 10 C 1.46931 * 120.63067 * 30.81366 * 9 7 2 11 11 C 1.53631 * 108.54198 * 126.36612 * 10 9 7 12 12 C 1.53047 * 109.24018 * 54.85812 * 11 10 9 13 13 N 1.46895 * 109.45689 * 178.48801 * 12 11 10 14 14 C 1.46896 * 111.00184 * 275.06656 * 13 12 11 15 15 C 1.53000 * 109.47219 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.52598 * 55.12403 * 15 14 13 17 17 C 1.53176 * 109.52365 * 175.31951 * 15 14 13 18 18 C 1.53183 * 109.03766 * 176.88908 * 17 15 14 19 19 C 1.53096 * 109.15852 * 303.01360 * 18 17 15 20 20 O 1.42903 * 109.41562 * 57.61048 * 19 18 17 21 21 C 1.42904 * 114.09505 * 298.84150 * 20 19 18 22 22 C 1.53041 * 109.53799 * 298.50913 * 12 11 10 23 23 C 1.46926 * 120.63144 * 211.09268 * 9 7 2 24 24 H 0.97001 * 120.00494 * 174.95540 * 1 2 3 25 25 H 1.08998 * 109.58514 * 246.19958 * 10 9 7 26 26 H 1.09003 * 109.58399 * 6.62546 * 10 9 7 27 27 H 1.09000 * 109.63497 * 294.86629 * 11 10 9 28 28 H 1.08999 * 109.45475 * 174.73742 * 11 10 9 29 29 H 1.08997 * 109.45059 * 58.52349 * 12 11 10 30 30 H 1.00900 * 111.00111 * 151.11215 * 13 12 11 31 31 H 1.08995 * 109.47140 * 300.00419 * 14 13 12 32 32 H 1.09002 * 109.46892 * 60.00133 * 14 13 12 33 33 H 1.09012 * 109.53907 * 296.74934 * 17 15 14 34 34 H 1.08997 * 109.54832 * 57.01238 * 17 15 14 35 35 H 1.09003 * 109.52157 * 183.11299 * 18 17 15 36 36 H 1.08994 * 109.57319 * 62.95072 * 18 17 15 37 37 H 1.09000 * 109.47800 * 297.62793 * 19 18 17 38 38 H 1.08997 * 109.47881 * 177.59628 * 19 18 17 39 39 H 1.08994 * 109.48364 * 301.17374 * 21 20 19 40 40 H 1.09004 * 109.47667 * 181.14155 * 21 20 19 41 41 H 1.09004 * 109.49628 * 301.41717 * 22 12 11 42 42 H 1.08995 * 109.49721 * 181.31973 * 22 12 11 43 43 H 1.09003 * 109.58802 * 353.37372 * 23 9 7 44 44 H 1.08997 * 109.58881 * 113.66103 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5477 1.4401 -0.7002 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5130 -2.1126 -0.3012 9 7 3.3252 -1.2338 0.3801 10 6 3.8392 -0.2838 1.3762 11 6 4.5288 -1.0766 2.4970 12 6 5.5974 -1.9868 1.8870 13 7 6.2846 -2.7205 2.9580 14 6 7.3779 -1.9208 3.5264 15 6 8.0687 -2.7166 4.6356 16 1 8.3960 -3.6796 4.2435 17 6 9.2804 -1.9330 5.1494 18 6 9.9173 -2.7025 6.3108 19 6 8.8661 -2.9273 7.4009 20 8 7.7532 -3.6338 6.8492 21 6 7.0890 -2.9409 5.7905 22 6 4.9367 -2.9817 0.9300 23 6 4.2503 -2.2142 -0.2043 24 1 -0.4851 -0.8368 -0.0739 25 1 4.5570 0.3874 0.9047 26 1 3.0129 0.2940 1.7905 27 1 3.7919 -1.6830 3.0236 28 1 4.9970 -0.3840 3.1964 29 1 6.3201 -1.3818 1.3397 30 1 6.6229 -3.6115 2.6266 31 1 8.1002 -1.6854 2.7448 32 1 6.9749 -0.9960 3.9392 33 1 10.0079 -1.8183 4.3456 34 1 8.9594 -0.9505 5.4953 35 1 10.7472 -2.1253 6.7185 36 1 10.2835 -3.6650 5.9538 37 1 8.5306 -1.9645 7.7863 38 1 9.3021 -3.5115 8.2112 39 1 6.7302 -1.9783 6.1549 40 1 6.2447 -3.5350 5.4408 41 1 4.1958 -3.5701 1.4714 42 1 5.6951 -3.6447 0.5139 43 1 3.6955 -2.9105 -0.8332 44 1 4.9995 -1.6974 -0.8041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611439183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:29 Heat of formation + Delta-G solvation = -64.382914 kcal Electronic energy + Delta-G solvation = -21308.376954 eV Core-core repulsion = 18259.288606 eV Total energy + Delta-G solvation = -3049.088349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.48665 -39.64382 -37.08051 -35.10258 -33.97401 -32.63999 -31.91146 -30.64131 -26.92341 -25.91266 -25.36661 -24.42638 -23.14206 -22.28203 -21.22028 -20.75792 -19.36714 -17.45068 -17.05771 -16.85632 -16.22632 -16.02326 -15.94015 -15.65503 -15.57803 -15.27955 -15.20802 -14.36313 -14.29889 -13.97301 -13.75244 -13.50933 -13.34076 -13.20025 -12.86041 -12.60341 -12.42428 -12.06280 -11.98758 -11.89152 -11.63288 -11.59805 -11.53368 -11.24366 -11.18369 -11.08087 -10.61840 -10.37236 -9.32429 -9.11631 -8.47407 -5.57958 1.40626 1.54584 1.73168 2.52702 3.00499 3.09211 3.10244 3.41157 3.79184 3.88069 3.90863 3.94687 4.04440 4.06838 4.28590 4.34380 4.38149 4.47361 4.52748 4.57161 4.62796 4.72186 4.72412 4.76627 4.80940 4.85715 4.91942 4.96656 4.99062 5.02594 5.10498 5.12205 5.16032 5.27782 5.28766 5.41772 5.51518 5.77323 6.12364 6.26339 6.31968 6.52778 6.91982 7.56682 8.08282 8.84598 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033980 B = 0.003822 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.817549 B = 7324.194731 C = 7482.080365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.072 4.072 3 Si 1.110 2.890 4 H -0.270 1.270 5 H -0.266 1.266 6 H -0.306 1.306 7 C -0.331 4.331 8 H 0.027 0.973 9 N -0.622 5.622 10 C 0.119 3.881 11 C -0.109 4.109 12 C 0.107 3.893 13 N -0.689 5.689 14 C 0.069 3.931 15 C -0.109 4.109 16 H 0.075 0.925 17 C -0.117 4.117 18 C -0.150 4.150 19 C 0.050 3.950 20 O -0.408 6.408 21 C 0.074 3.926 22 C -0.123 4.123 23 C 0.143 3.857 24 H 0.247 0.753 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.346 0.654 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.112 -4.081 11.555 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.266 4.266 3 Si 0.935 3.065 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.235 1.235 7 C -0.461 4.461 8 H 0.045 0.955 9 N -0.348 5.348 10 C -0.006 4.006 11 C -0.149 4.149 12 C -0.003 4.003 13 N -0.321 5.321 14 C -0.060 4.060 15 C -0.128 4.128 16 H 0.094 0.906 17 C -0.155 4.155 18 C -0.188 4.188 19 C -0.026 4.026 20 O -0.328 6.328 21 C -0.003 4.003 22 C -0.162 4.162 23 C 0.017 3.983 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.166 0.834 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 23.432 -2.487 12.159 26.516 hybrid contribution -0.068 -1.734 -1.116 2.063 sum 23.364 -4.221 11.043 26.185 Atomic orbital electron populations 1.71011 1.07361 1.29078 1.52697 1.27528 0.96557 1.04924 0.97609 0.83195 0.74105 0.71783 0.77391 1.19609 1.19066 1.23479 1.20116 0.87819 0.93538 1.44656 0.95536 1.44467 1.06192 1.38996 1.45124 1.21552 0.96643 0.92388 0.90067 1.21937 0.97555 0.98252 0.97162 1.21213 0.94377 0.94321 0.90379 1.60428 1.29687 1.06738 1.35258 1.21972 0.91495 0.96632 0.95934 1.21690 0.95915 0.99729 0.95467 0.90639 1.21632 0.96615 0.98718 0.98567 1.22150 0.98814 1.01402 0.96398 1.22776 0.86598 0.97256 0.96007 1.87916 1.45884 1.46929 1.52051 1.22540 0.94551 0.96948 0.86245 1.22041 0.99674 0.97684 0.96791 1.21066 0.91905 0.91190 0.94128 0.94380 0.94302 0.93185 0.93549 0.91036 0.93572 0.83439 0.94174 0.91392 0.90524 0.91447 0.89111 0.91398 0.92924 0.87959 0.93690 0.89106 0.93168 0.89663 0.93553 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.46 13.70 21.65 0.30 -62.16 16 2 C -0.07 -4.33 5.24 84.86 0.44 -3.88 16 3 Si 1.11 53.92 24.73 68.60 1.70 55.62 16 4 H -0.27 -11.98 6.56 99.48 0.65 -11.33 16 5 H -0.27 -11.88 6.80 99.48 0.68 -11.20 16 6 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 7 C -0.33 -19.47 9.88 84.03 0.83 -18.64 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 N -0.62 -30.10 2.72 -698.21 -1.90 -31.99 16 10 C 0.12 5.04 4.23 86.51 0.37 5.41 16 11 C -0.11 -3.78 5.61 30.82 0.17 -3.61 16 12 C 0.11 3.03 2.45 44.95 0.11 3.14 16 13 N -0.69 -15.81 5.81 -491.45 -2.86 -18.67 16 14 C 0.07 1.31 4.88 86.30 0.42 1.73 16 15 C -0.11 -1.86 2.53 -10.70 -0.03 -1.88 16 16 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 17 C -0.12 -1.59 5.31 30.71 0.16 -1.43 16 18 C -0.15 -1.85 6.14 30.69 0.19 -1.66 16 19 C 0.05 0.76 6.84 72.01 0.49 1.25 16 20 O -0.41 -9.03 10.77 -148.98 -1.60 -10.63 16 21 C 0.07 1.53 5.98 72.01 0.43 1.96 16 22 C -0.12 -3.79 5.36 30.67 0.16 -3.63 16 23 C 0.14 5.59 6.51 86.36 0.56 6.16 16 24 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 25 H 0.04 1.54 7.10 -2.39 -0.02 1.52 16 26 H 0.05 2.36 4.76 -2.39 -0.01 2.34 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 2.15 7.42 -2.39 -0.02 2.13 16 29 H 0.05 1.27 7.80 -2.39 -0.02 1.25 16 30 H 0.35 7.02 8.33 -89.69 -0.75 6.27 16 31 H 0.04 0.71 8.05 -2.39 -0.02 0.69 16 32 H 0.07 1.39 7.41 -2.39 -0.02 1.37 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 2.14 7.83 -2.38 -0.02 2.12 16 41 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 43 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.76 330.25 0.04 -68.72 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.08 Total: 14.19 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.32 Total: -15.08 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.46 Total: -112.82 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.60 Total: -10.63 kcal Atomic # 14 Polarization: 53.92 SS G_CDS: 1.70 Total: 55.62 kcal Total: -68.76 0.04 -68.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.333 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds