Wall clock time and date at job start Mon Mar 30 2020 01:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46795 * 239.99939 * 3 2 1 5 5 H 1.48498 * 109.46726 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47210 * 119.99728 * 3 2 1 7 7 C 1.38817 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99699 * 163.07918 * 7 2 1 9 9 N 1.36939 * 119.99711 * 343.08643 * 7 2 1 10 10 C 1.46933 * 120.62912 * 331.84133 * 9 7 2 11 11 C 1.53190 * 108.77163 * 233.58878 * 10 9 7 12 12 C 1.53046 * 109.31487 * 305.36556 * 11 10 9 13 13 N 1.46893 * 109.45925 * 181.38668 * 12 11 10 14 14 C 1.46904 * 111.00062 * 154.97172 * 13 12 11 15 15 C 1.52999 * 109.47463 * 179.97438 * 14 13 12 16 16 H 1.08993 * 109.52138 * 304.87691 * 15 14 13 17 17 C 1.53177 * 109.52041 * 184.68613 * 15 14 13 18 18 C 1.53182 * 109.03421 * 183.11689 * 17 15 14 19 19 C 1.53093 * 109.16364 * 56.98127 * 18 17 15 20 20 O 1.42908 * 109.41532 * 302.38922 * 19 18 17 21 21 C 1.42909 * 114.09497 * 61.15734 * 20 19 18 22 22 C 1.53039 * 109.52603 * 61.37388 * 12 11 10 23 23 C 1.46917 * 120.62871 * 151.82176 * 9 7 2 24 24 H 0.97001 * 119.99861 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.58544 * 113.80514 * 10 9 7 26 26 H 1.08997 * 109.70361 * 353.44170 * 10 9 7 27 27 H 1.08997 * 109.50009 * 185.41358 * 11 10 9 28 28 H 1.09005 * 109.50095 * 65.31844 * 11 10 9 29 29 H 1.09000 * 109.45615 * 301.35753 * 12 11 10 30 30 H 1.00899 * 111.00197 * 31.01947 * 13 12 11 31 31 H 1.09002 * 109.46946 * 59.99671 * 14 13 12 32 32 H 1.09005 * 109.47026 * 300.00418 * 14 13 12 33 33 H 1.09004 * 109.54602 * 302.98017 * 17 15 14 34 34 H 1.08997 * 109.54319 * 63.25164 * 17 15 14 35 35 H 1.09005 * 109.51905 * 297.07757 * 18 17 15 36 36 H 1.09000 * 109.57250 * 176.91734 * 18 17 15 37 37 H 1.08999 * 109.47764 * 182.41116 * 19 18 17 38 38 H 1.08995 * 109.48924 * 62.37982 * 19 18 17 39 39 H 1.09000 * 109.48334 * 178.85798 * 21 20 19 40 40 H 1.09003 * 109.48635 * 58.83315 * 21 20 19 41 41 H 1.08997 * 109.50169 * 58.57658 * 22 12 11 42 42 H 1.09001 * 109.49718 * 178.67834 * 22 12 11 43 43 H 1.09001 * 109.58580 * 246.19683 * 23 9 7 44 44 H 1.08997 * 109.59007 * 6.47703 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 0.2258 -2.3399 1.2677 11 6 0.4971 -3.3191 2.4141 12 6 0.8117 -4.7008 1.8360 13 7 1.0398 -5.6501 2.9336 14 6 0.7590 -7.0270 2.5056 15 6 1.0078 -7.9847 3.6725 16 1 2.0220 -7.8467 4.0471 17 6 0.8288 -9.4295 3.1961 18 6 1.0035 -10.3742 4.3892 19 6 0.0009 -9.9944 5.4820 20 8 0.2016 -8.6302 5.8575 21 6 0.0051 -7.6971 4.7930 22 6 2.0673 -4.6171 0.9651 23 6 1.8138 -3.6528 -0.1980 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6771 -2.6405 0.7364 26 1 0.0965 -1.3347 1.6686 27 1 -0.3835 -3.3840 3.0532 28 1 1.3468 -2.9676 2.9995 29 1 -0.0284 -5.0408 1.2305 30 1 0.4913 -5.4044 3.7440 31 1 1.4134 -7.2898 1.6745 32 1 -0.2808 -7.1037 2.1874 33 1 -0.1692 -9.5538 2.7757 34 1 1.5768 -9.6585 2.4371 35 1 2.0177 -10.2855 4.7786 36 1 0.8239 -11.4012 4.0711 37 1 0.1495 -10.6360 6.3505 38 1 -1.0138 -10.1221 5.1050 39 1 0.1565 -6.6839 5.1652 40 1 -1.0096 -7.7946 4.4068 41 1 2.9021 -4.2532 1.5642 42 1 2.3044 -5.6059 0.5726 43 1 1.0402 -4.0604 -0.8488 44 1 2.7332 -3.5130 -0.7665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611439184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:33 Heat of formation + Delta-G solvation = -42.440005 kcal Electronic energy + Delta-G solvation = -21151.221914 eV Core-core repulsion = 18103.085082 eV Total energy + Delta-G solvation = -3048.136833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.70428 -37.99162 -35.64669 -33.83483 -32.46391 -31.15408 -29.91187 -28.88763 -25.76756 -25.27721 -24.24082 -22.38062 -21.80602 -21.01537 -20.24628 -19.00365 -16.81080 -16.47632 -16.37234 -15.33519 -15.05398 -14.88948 -14.64050 -14.28719 -13.94094 -13.47243 -13.37274 -13.28279 -12.96589 -12.81855 -12.39936 -12.12237 -11.76664 -11.48235 -11.35585 -11.22965 -11.07680 -10.78354 -10.69092 -10.63233 -10.46575 -10.30412 -10.16324 -9.89814 -9.62795 -9.56463 -9.41299 -8.44167 -8.16597 -6.64047 -5.76286 -3.18302 3.40759 3.46136 3.48090 3.67455 4.22358 4.52586 4.55637 4.60168 4.69839 4.79222 4.98438 5.17773 5.22321 5.36824 5.37945 5.44768 5.46387 5.48500 5.52813 5.61235 5.71539 5.72825 5.82260 5.87215 5.95698 5.97675 6.16807 6.20935 6.37161 6.52172 6.57402 6.66006 6.69370 6.85322 6.99153 7.07338 7.37381 7.39471 7.61580 7.68465 7.82424 8.48353 9.24434 9.88062 10.45190 11.32486 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048500 B = 0.003349 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.179934 B = 8358.883525 C = 8601.854734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.141 4.141 12 C 0.096 3.904 13 N -0.689 5.689 14 C 0.067 3.933 15 C -0.120 4.120 16 H 0.089 0.911 17 C -0.117 4.117 18 C -0.155 4.155 19 C 0.059 3.941 20 O -0.382 6.382 21 C 0.064 3.936 22 C -0.116 4.116 23 C 0.145 3.855 24 H 0.254 0.746 25 H 0.015 0.985 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.334 0.666 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.013 0.987 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -18.935 8.186 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.181 4.181 12 C -0.013 4.013 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.140 4.140 16 H 0.107 0.893 17 C -0.155 4.155 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.301 6.301 21 C -0.013 4.013 22 C -0.156 4.156 23 C 0.018 3.982 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.152 0.848 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.230 -18.765 8.229 20.491 hybrid contribution -0.670 0.713 -0.396 1.055 sum -0.900 -18.053 7.833 19.699 Atomic orbital electron populations 1.70021 1.05274 1.25562 1.54097 1.25047 0.95291 0.98411 1.00969 0.86361 0.78903 0.83313 0.78152 1.20907 1.21667 1.20996 1.19164 0.92548 0.84870 1.41508 0.91740 1.44041 1.35842 1.01597 1.49977 1.20725 0.88603 0.98078 0.87814 1.22409 1.00110 0.95361 1.00228 1.21474 0.96822 0.91757 0.91225 1.60647 1.61755 1.01288 1.08351 1.21939 0.98729 0.88795 0.96829 1.21822 1.01564 0.94487 0.96079 0.89314 1.21608 1.02182 0.94127 0.97619 1.22182 1.00933 0.99585 0.96581 1.22571 0.97550 0.83522 0.98160 1.87949 1.91286 1.15556 1.35262 1.22688 0.97222 0.93355 0.88045 1.21996 0.97378 0.98390 0.97840 1.20925 0.97481 0.86927 0.92897 0.93629 0.96666 0.89345 0.93698 0.91794 0.94731 0.84773 0.90764 0.95594 0.91929 0.91231 0.90968 0.91011 0.89108 0.93400 0.88542 0.93509 0.91759 0.93658 0.96867 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -15.11 2.99 -172.32 -0.52 -15.63 16 10 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 11 C -0.14 -2.72 5.36 -26.61 -0.14 -2.87 16 12 C 0.10 1.65 2.46 -67.67 -0.17 1.49 16 13 N -0.69 -9.82 6.31 -106.68 -0.67 -10.49 16 14 C 0.07 0.80 4.95 -3.82 -0.02 0.78 16 15 C -0.12 -1.26 2.60 -90.48 -0.24 -1.49 16 16 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.12 -1.03 5.31 -26.55 -0.14 -1.17 16 18 C -0.16 -1.22 6.14 -26.59 -0.16 -1.38 16 19 C 0.06 0.50 6.84 37.21 0.25 0.75 16 20 O -0.38 -4.36 10.77 -35.23 -0.38 -4.74 16 21 C 0.06 0.67 5.84 37.20 0.22 0.89 16 22 C -0.12 -2.12 5.59 -26.61 -0.15 -2.27 16 23 C 0.14 3.12 6.52 -3.71 -0.02 3.09 16 24 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 27 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 30 H 0.33 4.42 6.64 -39.29 -0.26 4.16 16 31 H 0.07 0.93 7.41 -51.93 -0.38 0.54 16 32 H 0.03 0.31 8.06 -51.93 -0.42 -0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 1.02 6.80 -51.93 -0.35 0.67 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.04 0.74 7.42 -51.93 -0.39 0.35 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -29.73 333.69 -9.74 -39.47 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.98 Total: 0.55 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.82 Total: -5.20 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.57 Total: -51.99 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.38 Total: -4.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.73 -9.74 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.968 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds