Wall clock time and date at job start Mon Mar 30 2020 01:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46795 * 239.99939 * 3 2 1 5 5 H 1.48498 * 109.46726 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47210 * 119.99728 * 3 2 1 7 7 C 1.38817 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99699 * 163.07918 * 7 2 1 9 9 N 1.36939 * 119.99711 * 343.08643 * 7 2 1 10 10 C 1.46933 * 120.62912 * 331.84133 * 9 7 2 11 11 C 1.53190 * 108.77163 * 233.58878 * 10 9 7 12 12 C 1.53046 * 109.31487 * 305.36556 * 11 10 9 13 13 N 1.46893 * 109.45925 * 181.38668 * 12 11 10 14 14 C 1.46904 * 111.00062 * 154.97172 * 13 12 11 15 15 C 1.52999 * 109.47463 * 179.97438 * 14 13 12 16 16 H 1.08993 * 109.52138 * 304.87691 * 15 14 13 17 17 C 1.53177 * 109.52041 * 184.68613 * 15 14 13 18 18 C 1.53182 * 109.03421 * 183.11689 * 17 15 14 19 19 C 1.53093 * 109.16364 * 56.98127 * 18 17 15 20 20 O 1.42908 * 109.41532 * 302.38922 * 19 18 17 21 21 C 1.42909 * 114.09497 * 61.15734 * 20 19 18 22 22 C 1.53039 * 109.52603 * 61.37388 * 12 11 10 23 23 C 1.46917 * 120.62871 * 151.82176 * 9 7 2 24 24 H 0.97001 * 119.99861 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.58544 * 113.80514 * 10 9 7 26 26 H 1.08997 * 109.70361 * 353.44170 * 10 9 7 27 27 H 1.08997 * 109.50009 * 185.41358 * 11 10 9 28 28 H 1.09005 * 109.50095 * 65.31844 * 11 10 9 29 29 H 1.09000 * 109.45615 * 301.35753 * 12 11 10 30 30 H 1.00899 * 111.00197 * 31.01947 * 13 12 11 31 31 H 1.09002 * 109.46946 * 59.99671 * 14 13 12 32 32 H 1.09005 * 109.47026 * 300.00418 * 14 13 12 33 33 H 1.09004 * 109.54602 * 302.98017 * 17 15 14 34 34 H 1.08997 * 109.54319 * 63.25164 * 17 15 14 35 35 H 1.09005 * 109.51905 * 297.07757 * 18 17 15 36 36 H 1.09000 * 109.57250 * 176.91734 * 18 17 15 37 37 H 1.08999 * 109.47764 * 182.41116 * 19 18 17 38 38 H 1.08995 * 109.48924 * 62.37982 * 19 18 17 39 39 H 1.09000 * 109.48334 * 178.85798 * 21 20 19 40 40 H 1.09003 * 109.48635 * 58.83315 * 21 20 19 41 41 H 1.08997 * 109.50169 * 58.57658 * 22 12 11 42 42 H 1.09001 * 109.49718 * 178.67834 * 22 12 11 43 43 H 1.09001 * 109.58580 * 246.19683 * 23 9 7 44 44 H 1.08997 * 109.59007 * 6.47703 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 0.2258 -2.3399 1.2677 11 6 0.4971 -3.3191 2.4141 12 6 0.8117 -4.7008 1.8360 13 7 1.0398 -5.6501 2.9336 14 6 0.7590 -7.0270 2.5056 15 6 1.0078 -7.9847 3.6725 16 1 2.0220 -7.8467 4.0471 17 6 0.8288 -9.4295 3.1961 18 6 1.0035 -10.3742 4.3892 19 6 0.0009 -9.9944 5.4820 20 8 0.2016 -8.6302 5.8575 21 6 0.0051 -7.6971 4.7930 22 6 2.0673 -4.6171 0.9651 23 6 1.8138 -3.6528 -0.1980 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6771 -2.6405 0.7364 26 1 0.0965 -1.3347 1.6686 27 1 -0.3835 -3.3840 3.0532 28 1 1.3468 -2.9676 2.9995 29 1 -0.0284 -5.0408 1.2305 30 1 0.4913 -5.4044 3.7440 31 1 1.4134 -7.2898 1.6745 32 1 -0.2808 -7.1037 2.1874 33 1 -0.1692 -9.5538 2.7757 34 1 1.5768 -9.6585 2.4371 35 1 2.0177 -10.2855 4.7786 36 1 0.8239 -11.4012 4.0711 37 1 0.1495 -10.6360 6.3505 38 1 -1.0138 -10.1221 5.1050 39 1 0.1565 -6.6839 5.1652 40 1 -1.0096 -7.7946 4.4068 41 1 2.9021 -4.2532 1.5642 42 1 2.3044 -5.6059 0.5726 43 1 1.0402 -4.0604 -0.8488 44 1 2.7332 -3.5130 -0.7665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611439184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:32 Heat of formation + Delta-G solvation = -61.349616 kcal Electronic energy + Delta-G solvation = -21152.041897 eV Core-core repulsion = 18103.085082 eV Total energy + Delta-G solvation = -3048.956815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52627 -39.48720 -36.99202 -35.03977 -33.82649 -32.52246 -31.56431 -30.40634 -27.13305 -26.11424 -25.69681 -23.88521 -23.21792 -22.29048 -21.08872 -20.60578 -18.72257 -17.37327 -17.19057 -16.87909 -16.29674 -16.00364 -15.77970 -15.57789 -15.32517 -15.14232 -14.82474 -14.42450 -14.23068 -13.82199 -13.71037 -13.52477 -13.11794 -13.00943 -12.74779 -12.53411 -12.32633 -12.20764 -12.10133 -12.03264 -11.91475 -11.80203 -11.56275 -11.27197 -11.16552 -11.06388 -10.53594 -10.37617 -9.35193 -8.69301 -7.88239 -5.33617 1.46688 1.49431 1.56278 2.51368 2.95668 3.10766 3.29059 3.68812 3.80745 3.86760 3.92179 4.03083 4.04653 4.13212 4.27815 4.41028 4.45618 4.52616 4.54218 4.60702 4.70028 4.71328 4.76227 4.83551 4.86797 4.93477 4.99063 5.04743 5.08839 5.10545 5.15929 5.23705 5.26577 5.40246 5.43541 5.52419 5.64136 5.73132 6.14114 6.27106 6.38873 6.49874 7.14440 7.85606 8.37553 9.18266 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048500 B = 0.003349 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.179934 B = 8358.883525 C = 8601.854734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.128 4.128 12 C 0.107 3.893 13 N -0.688 5.688 14 C 0.070 3.930 15 C -0.111 4.111 16 H 0.074 0.926 17 C -0.117 4.117 18 C -0.151 4.151 19 C 0.051 3.949 20 O -0.404 6.404 21 C 0.063 3.937 22 C -0.103 4.103 23 C 0.141 3.859 24 H 0.250 0.750 25 H -0.005 1.005 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.342 0.658 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.012 0.988 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.411 -20.662 8.731 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.054 3.946 11 C -0.167 4.167 12 C -0.003 4.003 13 N -0.320 5.320 14 C -0.060 4.060 15 C -0.131 4.131 16 H 0.093 0.907 17 C -0.155 4.155 18 C -0.189 4.189 19 C -0.025 4.025 20 O -0.323 6.323 21 C -0.014 4.014 22 C -0.143 4.143 23 C 0.015 3.985 24 H 0.059 0.941 25 H 0.013 0.987 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.161 0.839 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.030 0.970 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.213 -20.531 8.782 22.332 hybrid contribution -0.817 1.177 -0.577 1.544 sum -0.604 -19.354 8.205 21.030 Atomic orbital electron populations 1.70174 1.06660 1.25961 1.55349 1.25813 0.96082 1.01527 1.01159 0.85331 0.77591 0.79122 0.78355 1.20069 1.21873 1.20452 1.19492 0.92841 0.86158 1.41110 0.91738 1.44322 1.35983 1.02395 1.50789 1.20532 0.87705 0.97542 0.88830 1.22173 1.00712 0.95425 0.98406 1.21220 0.96088 0.91177 0.91799 1.60550 1.62113 1.01830 1.07533 1.21971 0.99000 0.87555 0.97431 1.21706 1.00704 0.95289 0.95361 0.90715 1.21618 1.02740 0.92980 0.98120 1.22162 1.00361 1.00452 0.95909 1.22789 0.98248 0.82346 0.99118 1.87920 1.91498 1.16939 1.35949 1.22679 0.97545 0.93204 0.87936 1.21813 0.97411 0.98543 0.96528 1.21067 0.97174 0.86043 0.94218 0.94053 0.98658 0.92724 0.91411 0.92759 0.94953 0.83888 0.90894 0.95009 0.91256 0.90770 0.91633 0.88992 0.87786 0.92536 0.89062 0.92821 0.92920 0.91049 0.97003 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.09 11.19 21.65 0.24 -55.84 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 3 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.27 -15.02 9.58 84.03 0.81 -14.22 16 8 H 0.06 3.56 7.88 -2.91 -0.02 3.53 16 9 N -0.61 -31.63 2.99 -699.11 -2.09 -33.72 16 10 C 0.18 8.86 5.30 86.36 0.46 9.32 16 11 C -0.13 -4.85 5.36 30.67 0.16 -4.68 16 12 C 0.11 3.51 2.46 44.95 0.11 3.62 16 13 N -0.69 -18.21 6.31 -491.42 -3.10 -21.31 16 14 C 0.07 1.51 4.95 86.30 0.43 1.94 16 15 C -0.11 -2.10 2.60 -10.70 -0.03 -2.13 16 16 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 17 C -0.12 -1.74 5.31 30.71 0.16 -1.58 16 18 C -0.15 -1.99 6.14 30.69 0.19 -1.80 16 19 C 0.05 0.75 6.84 72.01 0.49 1.25 16 20 O -0.40 -8.57 10.77 -148.98 -1.60 -10.17 16 21 C 0.06 1.22 5.84 72.01 0.42 1.64 16 22 C -0.10 -3.63 5.59 30.67 0.17 -3.45 16 23 C 0.14 6.03 6.52 86.37 0.56 6.59 16 24 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.05 3.04 6.07 -2.39 -0.01 3.02 16 27 H 0.07 2.24 8.10 -2.39 -0.02 2.22 16 28 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.03 1.10 7.80 -2.39 -0.02 1.08 16 30 H 0.34 8.35 6.64 -89.69 -0.60 7.75 16 31 H 0.07 1.62 7.41 -2.39 -0.02 1.61 16 32 H 0.03 0.68 8.06 -2.38 -0.02 0.66 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 1.81 6.80 -2.39 -0.02 1.79 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 2.14 7.42 -2.39 -0.02 2.13 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 Total: -1.00 -64.14 333.69 0.19 -63.95 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.36 Total: 15.51 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 4.35 Total: -5.96 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -4.95 Total: -110.88 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.60 Total: -10.17 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -64.14 0.19 -63.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.604 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds