Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46915 * 2 1 4 4 C 1.53003 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47301 * 299.99916 * 4 3 2 6 6 C 1.53000 * 109.47166 * 300.00023 * 5 4 3 7 7 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 5 4 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 5 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 5 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47198 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99761 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99724 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00074 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99758 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47345 * 59.99929 * 17 15 13 19 19 H 1.48502 * 109.47317 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47320 * 300.00374 * 17 15 13 21 21 C 1.52997 * 109.46762 * 59.99950 * 5 4 3 22 22 C 1.52994 * 109.47347 * 299.99912 * 21 5 4 23 23 H 1.09001 * 109.47245 * 59.99527 * 1 2 3 24 24 H 1.08996 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47259 * 299.99938 * 1 2 3 26 26 H 1.08994 * 109.46775 * 240.00159 * 2 1 3 27 27 H 1.09002 * 109.47575 * 60.00464 * 3 2 1 28 28 H 1.09001 * 109.47551 * 300.00286 * 3 2 1 29 29 H 1.09004 * 109.47038 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46939 * 60.00579 * 4 3 2 31 31 H 1.08998 * 109.47559 * 299.99905 * 6 5 4 32 32 H 1.09003 * 109.47049 * 59.99744 * 6 5 4 33 33 H 1.09001 * 109.47192 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00384 * 0.02562 * 7 5 4 35 35 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 37 37 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 38 38 H 1.09000 * 109.47211 * 300.00689 * 12 11 10 39 39 H 1.09007 * 109.46376 * 60.00147 * 12 11 10 40 40 H 0.96999 * 119.99800 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.47498 * 60.00357 * 21 5 4 42 42 H 1.09001 * 109.47245 * 179.97438 * 21 5 4 43 43 H 1.09000 * 109.47504 * 299.99937 * 22 21 5 44 44 H 1.09004 * 109.47131 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0795 0.7215 1.2502 6 6 3.5690 1.4429 2.4991 7 7 5.5445 0.7210 1.2504 8 6 6.2180 0.1423 2.2644 9 8 5.6096 -0.3838 3.1763 10 7 7.5657 0.1468 2.2675 11 6 8.2978 -0.4827 3.3694 12 6 9.8021 -0.3391 3.1301 13 6 10.5552 -0.9860 4.2639 14 1 10.0148 -1.4533 5.0738 15 6 11.9339 -0.9813 4.2670 16 7 12.5918 -0.4119 3.2809 17 14 12.8673 -1.7839 5.6720 18 1 12.5133 -3.2244 5.7426 19 1 14.3274 -1.6433 5.4405 20 1 12.5033 -1.1216 6.9503 21 6 3.5695 -0.7210 1.2501 22 6 2.0395 -0.7210 1.2495 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9333 2.4702 0.0002 30 1 3.9337 0.9286 -0.8892 31 1 3.9323 2.4706 2.4992 32 1 2.4790 1.4429 2.4986 33 1 3.9316 0.9289 3.3893 34 1 6.0298 1.1409 0.5231 35 1 8.0510 0.5661 1.5398 36 1 8.0307 0.0035 4.3077 37 1 8.0378 -1.5400 3.4211 38 1 10.0689 -0.8255 2.1918 39 1 10.0623 0.7182 3.0781 40 1 13.5618 -0.4089 3.2830 41 1 3.9332 -1.2350 0.3604 42 1 3.9328 -1.2349 2.1401 43 1 1.6758 -0.2071 2.1393 44 1 1.6762 -1.7487 1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612370737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = -87.062155 kcal Electronic energy + Delta-G solvation = -20966.179844 eV Core-core repulsion = 17916.108050 eV Total energy + Delta-G solvation = -3050.071794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59514 -39.69481 -36.66645 -35.64332 -34.81922 -32.70192 -31.73317 -30.95133 -28.89186 -26.87065 -25.80435 -23.83006 -23.05375 -22.17312 -21.31870 -19.71468 -19.29409 -18.38629 -17.53943 -16.57731 -16.49458 -16.05107 -15.63121 -15.36098 -15.07847 -14.98472 -14.93637 -14.31615 -14.27873 -13.79822 -13.34937 -13.20861 -13.16411 -12.93117 -12.86371 -12.65531 -12.52541 -12.31301 -12.21712 -11.93831 -11.84416 -11.64283 -11.59224 -11.44275 -11.09949 -11.09757 -10.61313 -10.59312 -10.17542 -9.66496 -8.24054 -6.34495 1.41500 1.44146 1.51993 1.82822 2.25483 2.41435 3.10576 3.36778 3.70241 3.80141 3.98914 4.14517 4.21028 4.31440 4.45941 4.48880 4.53116 4.60015 4.65039 4.71360 4.85058 4.87255 4.89364 4.96651 5.03165 5.06286 5.13738 5.19449 5.26215 5.29897 5.33934 5.43524 5.44671 5.49526 5.58787 5.59752 5.66286 5.76166 5.80950 6.13226 6.18399 6.78589 7.21906 7.34964 7.70801 8.87775 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053617 B = 0.003031 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.092390 B = 9236.824076 C = 9440.169885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.108 4.108 4 C -0.113 4.113 5 C 0.193 3.807 6 C -0.161 4.161 7 N -0.731 5.731 8 C 0.698 3.302 9 O -0.627 6.627 10 N -0.738 5.738 11 C 0.163 3.837 12 C 0.025 3.975 13 C -0.548 4.548 14 H 0.058 0.942 15 C 0.007 3.993 16 N -0.927 5.927 17 Si 0.965 3.035 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.128 4.128 22 C -0.108 4.108 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.407 0.593 35 H 0.404 0.596 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.525 5.131 -10.600 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.145 4.145 4 C -0.151 4.151 5 C 0.107 3.893 6 C -0.219 4.219 7 N -0.387 5.387 8 C 0.398 3.602 9 O -0.509 6.509 10 N -0.393 5.393 11 C 0.039 3.961 12 C -0.013 4.013 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.166 4.166 22 C -0.146 4.146 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.243 0.757 35 H 0.239 0.761 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.897 4.694 -9.834 25.358 hybrid contribution 1.484 -0.186 0.220 1.512 sum -21.413 4.508 -9.613 23.901 Atomic orbital electron populations 1.21807 0.94299 1.01885 1.02242 1.21159 0.96117 0.96125 0.97536 1.21605 0.93289 0.96407 1.03248 1.21761 0.97234 1.00752 0.95373 1.20239 0.77044 0.95368 0.96641 1.22281 1.02017 0.99684 0.97956 1.45261 1.07155 1.61677 1.24597 1.16204 0.81713 0.79367 0.82933 1.90809 1.68237 1.52721 1.39114 1.45283 1.04531 1.62089 1.27364 1.21008 0.91814 0.95545 0.87759 1.19114 0.89302 0.96325 0.96512 1.21445 0.92129 1.37209 1.07829 0.92344 1.25876 0.98687 0.95817 0.98798 1.70052 1.08183 1.45070 1.33344 0.85497 0.77185 0.79161 0.79204 1.19334 1.20499 1.19331 1.21899 0.96920 0.96328 1.01483 1.21595 0.93416 1.00731 0.98841 0.91668 0.92798 0.92619 0.91125 0.91260 0.89770 0.90147 0.90558 0.92669 0.89853 0.93818 0.75702 0.76059 0.94060 0.94107 0.97425 0.97411 0.92519 0.92538 0.93281 0.91850 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.09 -1.23 2.72 -10.80 -0.03 -1.26 16 3 C -0.11 -1.30 4.93 30.59 0.15 -1.15 16 4 C -0.11 -1.64 4.84 30.59 0.15 -1.49 16 5 C 0.19 4.27 0.80 3.60 0.00 4.27 16 6 C -0.16 -3.89 7.70 71.98 0.55 -3.34 16 7 N -0.73 -18.51 5.11 -438.02 -2.24 -20.75 16 8 C 0.70 24.68 7.98 179.05 1.43 26.11 16 9 O -0.63 -26.91 12.55 -4.01 -0.05 -26.97 16 10 N -0.74 -26.82 5.56 -478.52 -2.66 -29.48 16 11 C 0.16 7.31 5.61 86.38 0.48 7.80 16 12 C 0.03 1.29 5.09 29.85 0.15 1.44 16 13 C -0.55 -31.17 9.11 25.60 0.23 -30.93 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 17 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 C -0.13 -3.14 4.66 30.59 0.14 -2.99 16 22 C -0.11 -2.01 4.93 30.59 0.15 -1.86 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.85 6.43 -2.39 -0.02 0.84 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.64 4.81 -2.39 -0.01 1.63 16 33 H 0.04 1.41 6.15 -2.39 -0.01 1.39 16 34 H 0.41 7.81 8.49 -92.71 -0.79 7.02 16 35 H 0.40 12.55 8.49 -92.71 -0.79 11.77 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 1.62 6.17 -2.39 -0.01 1.61 16 43 H 0.06 1.21 6.43 -2.39 -0.02 1.20 16 44 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -68.16 337.40 1.32 -66.84 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.59 Total: 22.36 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 4.54 Total: -3.50 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.61 Total: -104.87 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.16 1.32 -66.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612370737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.221 kcal (2) G-P(sol) polarization free energy of solvation -68.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds