Wall clock time and date at job start Mon Mar 30 2020 01:33:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52996 * 109.46915 * 2 1
4 4 C 1.53003 * 109.46915 * 179.97438 * 3 2 1
5 5 C 1.52996 * 109.47301 * 299.99916 * 4 3 2
6 6 C 1.53000 * 109.47166 * 300.00023 * 5 4 3
7 7 N 1.46498 * 109.47059 * 179.97438 * 5 4 3
8 8 C 1.34777 * 119.99828 * 179.72339 * 7 5 4
9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 5
10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 5
11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7
12 12 C 1.53004 * 109.47198 * 179.97438 * 11 10 8
13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 10
14 14 H 1.08002 * 119.99761 * 0.02562 * 13 12 11
15 15 C 1.37876 * 119.99724 * 180.02562 * 13 12 11
16 16 N 1.31514 * 120.00074 * 0.02562 * 15 13 12
17 17 Si 1.86795 * 119.99758 * 180.02562 * 15 13 12
18 18 H 1.48507 * 109.47345 * 59.99929 * 17 15 13
19 19 H 1.48502 * 109.47317 * 180.02562 * 17 15 13
20 20 H 1.48497 * 109.47320 * 300.00374 * 17 15 13
21 21 C 1.52997 * 109.46762 * 59.99950 * 5 4 3
22 22 C 1.52994 * 109.47347 * 299.99912 * 21 5 4
23 23 H 1.09001 * 109.47245 * 59.99527 * 1 2 3
24 24 H 1.08996 * 109.47187 * 180.02562 * 1 2 3
25 25 H 1.09008 * 109.47259 * 299.99938 * 1 2 3
26 26 H 1.08994 * 109.46775 * 240.00159 * 2 1 3
27 27 H 1.09002 * 109.47575 * 60.00464 * 3 2 1
28 28 H 1.09001 * 109.47551 * 300.00286 * 3 2 1
29 29 H 1.09004 * 109.47038 * 179.97438 * 4 3 2
30 30 H 1.09000 * 109.46939 * 60.00579 * 4 3 2
31 31 H 1.08998 * 109.47559 * 299.99905 * 6 5 4
32 32 H 1.09003 * 109.47049 * 59.99744 * 6 5 4
33 33 H 1.09001 * 109.47192 * 179.97438 * 6 5 4
34 34 H 0.97001 * 120.00384 * 0.02562 * 7 5 4
35 35 H 0.97000 * 119.99549 * 359.97438 * 10 8 7
36 36 H 1.09000 * 109.47602 * 299.99940 * 11 10 8
37 37 H 1.09006 * 109.46868 * 59.99976 * 11 10 8
38 38 H 1.09000 * 109.47211 * 300.00689 * 12 11 10
39 39 H 1.09007 * 109.46376 * 60.00147 * 12 11 10
40 40 H 0.96999 * 119.99800 * 180.02562 * 16 15 13
41 41 H 1.09003 * 109.47498 * 60.00357 * 21 5 4
42 42 H 1.09001 * 109.47245 * 179.97438 * 21 5 4
43 43 H 1.09000 * 109.47504 * 299.99937 * 22 21 5
44 44 H 1.09004 * 109.47131 * 180.02562 * 22 21 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 6 4.0795 0.7215 1.2502
6 6 3.5690 1.4429 2.4991
7 7 5.5445 0.7210 1.2504
8 6 6.2180 0.1423 2.2644
9 8 5.6096 -0.3838 3.1763
10 7 7.5657 0.1468 2.2675
11 6 8.2978 -0.4827 3.3694
12 6 9.8021 -0.3391 3.1301
13 6 10.5552 -0.9860 4.2639
14 1 10.0148 -1.4533 5.0738
15 6 11.9339 -0.9813 4.2670
16 7 12.5918 -0.4119 3.2809
17 14 12.8673 -1.7839 5.6720
18 1 12.5133 -3.2244 5.7426
19 1 14.3274 -1.6433 5.4405
20 1 12.5033 -1.1216 6.9503
21 6 3.5695 -0.7210 1.2501
22 6 2.0395 -0.7210 1.2495
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3634 0.5139 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.6767 1.9564 0.8900
28 1 1.6766 1.9564 -0.8899
29 1 3.9333 2.4702 0.0002
30 1 3.9337 0.9286 -0.8892
31 1 3.9323 2.4706 2.4992
32 1 2.4790 1.4429 2.4986
33 1 3.9316 0.9289 3.3893
34 1 6.0298 1.1409 0.5231
35 1 8.0510 0.5661 1.5398
36 1 8.0307 0.0035 4.3077
37 1 8.0378 -1.5400 3.4211
38 1 10.0689 -0.8255 2.1918
39 1 10.0623 0.7182 3.0781
40 1 13.5618 -0.4089 3.2830
41 1 3.9332 -1.2350 0.3604
42 1 3.9328 -1.2349 2.1401
43 1 1.6758 -0.2071 2.1393
44 1 1.6762 -1.7487 1.2500
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000612370737.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:33:38
Heat of formation + Delta-G solvation = -87.062155 kcal
Electronic energy + Delta-G solvation = -20966.179844 eV
Core-core repulsion = 17916.108050 eV
Total energy + Delta-G solvation = -3050.071794 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.59514 -39.69481 -36.66645 -35.64332 -34.81922 -32.70192 -31.73317 -30.95133
-28.89186 -26.87065 -25.80435 -23.83006 -23.05375 -22.17312 -21.31870 -19.71468
-19.29409 -18.38629 -17.53943 -16.57731 -16.49458 -16.05107 -15.63121 -15.36098
-15.07847 -14.98472 -14.93637 -14.31615 -14.27873 -13.79822 -13.34937 -13.20861
-13.16411 -12.93117 -12.86371 -12.65531 -12.52541 -12.31301 -12.21712 -11.93831
-11.84416 -11.64283 -11.59224 -11.44275 -11.09949 -11.09757 -10.61313 -10.59312
-10.17542 -9.66496 -8.24054 -6.34495 1.41500 1.44146 1.51993 1.82822
2.25483 2.41435 3.10576 3.36778 3.70241 3.80141 3.98914 4.14517
4.21028 4.31440 4.45941 4.48880 4.53116 4.60015 4.65039 4.71360
4.85058 4.87255 4.89364 4.96651 5.03165 5.06286 5.13738 5.19449
5.26215 5.29897 5.33934 5.43524 5.44671 5.49526 5.58787 5.59752
5.66286 5.76166 5.80950 6.13226 6.18399 6.78589 7.21906 7.34964
7.70801 8.87775
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.053617 B = 0.003031 C = 0.002965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.092390 B = 9236.824076 C = 9440.169885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.091 4.091
3 C -0.108 4.108
4 C -0.113 4.113
5 C 0.193 3.807
6 C -0.161 4.161
7 N -0.731 5.731
8 C 0.698 3.302
9 O -0.627 6.627
10 N -0.738 5.738
11 C 0.163 3.837
12 C 0.025 3.975
13 C -0.548 4.548
14 H 0.058 0.942
15 C 0.007 3.993
16 N -0.927 5.927
17 Si 0.965 3.035
18 H -0.268 1.268
19 H -0.280 1.280
20 H -0.268 1.268
21 C -0.128 4.128
22 C -0.108 4.108
23 H 0.064 0.936
24 H 0.053 0.947
25 H 0.055 0.945
26 H 0.070 0.930
27 H 0.069 0.931
28 H 0.084 0.916
29 H 0.080 0.920
30 H 0.076 0.924
31 H 0.054 0.946
32 H 0.083 0.917
33 H 0.043 0.957
34 H 0.407 0.593
35 H 0.404 0.596
36 H 0.041 0.959
37 H 0.041 0.959
38 H 0.007 0.993
39 H 0.008 0.992
40 H 0.266 0.734
41 H 0.056 0.944
42 H 0.048 0.952
43 H 0.063 0.937
44 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.525 5.131 -10.600 25.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.109 4.109
3 C -0.145 4.145
4 C -0.151 4.151
5 C 0.107 3.893
6 C -0.219 4.219
7 N -0.387 5.387
8 C 0.398 3.602
9 O -0.509 6.509
10 N -0.393 5.393
11 C 0.039 3.961
12 C -0.013 4.013
13 C -0.586 4.586
14 H 0.077 0.923
15 C -0.192 4.192
16 N -0.566 5.566
17 Si 0.790 3.210
18 H -0.193 1.193
19 H -0.205 1.205
20 H -0.193 1.193
21 C -0.166 4.166
22 C -0.146 4.146
23 H 0.083 0.917
24 H 0.072 0.928
25 H 0.074 0.926
26 H 0.089 0.911
27 H 0.087 0.913
28 H 0.102 0.898
29 H 0.099 0.901
30 H 0.094 0.906
31 H 0.073 0.927
32 H 0.101 0.899
33 H 0.062 0.938
34 H 0.243 0.757
35 H 0.239 0.761
36 H 0.059 0.941
37 H 0.059 0.941
38 H 0.026 0.974
39 H 0.026 0.974
40 H 0.075 0.925
41 H 0.075 0.925
42 H 0.067 0.933
43 H 0.081 0.919
44 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -22.897 4.694 -9.834 25.358
hybrid contribution 1.484 -0.186 0.220 1.512
sum -21.413 4.508 -9.613 23.901
Atomic orbital electron populations
1.21807 0.94299 1.01885 1.02242 1.21159 0.96117 0.96125 0.97536
1.21605 0.93289 0.96407 1.03248 1.21761 0.97234 1.00752 0.95373
1.20239 0.77044 0.95368 0.96641 1.22281 1.02017 0.99684 0.97956
1.45261 1.07155 1.61677 1.24597 1.16204 0.81713 0.79367 0.82933
1.90809 1.68237 1.52721 1.39114 1.45283 1.04531 1.62089 1.27364
1.21008 0.91814 0.95545 0.87759 1.19114 0.89302 0.96325 0.96512
1.21445 0.92129 1.37209 1.07829 0.92344 1.25876 0.98687 0.95817
0.98798 1.70052 1.08183 1.45070 1.33344 0.85497 0.77185 0.79161
0.79204 1.19334 1.20499 1.19331 1.21899 0.96920 0.96328 1.01483
1.21595 0.93416 1.00731 0.98841 0.91668 0.92798 0.92619 0.91125
0.91260 0.89770 0.90147 0.90558 0.92669 0.89853 0.93818 0.75702
0.76059 0.94060 0.94107 0.97425 0.97411 0.92519 0.92538 0.93281
0.91850 0.92055
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.61 9.19 71.98 0.66 -0.95 16
2 C -0.09 -1.23 2.72 -10.80 -0.03 -1.26 16
3 C -0.11 -1.30 4.93 30.59 0.15 -1.15 16
4 C -0.11 -1.64 4.84 30.59 0.15 -1.49 16
5 C 0.19 4.27 0.80 3.60 0.00 4.27 16
6 C -0.16 -3.89 7.70 71.98 0.55 -3.34 16
7 N -0.73 -18.51 5.11 -438.02 -2.24 -20.75 16
8 C 0.70 24.68 7.98 179.05 1.43 26.11 16
9 O -0.63 -26.91 12.55 -4.01 -0.05 -26.97 16
10 N -0.74 -26.82 5.56 -478.52 -2.66 -29.48 16
11 C 0.16 7.31 5.61 86.38 0.48 7.80 16
12 C 0.03 1.29 5.09 29.85 0.15 1.44 16
13 C -0.55 -31.17 9.11 25.60 0.23 -30.93 16
14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
15 C 0.01 0.40 5.46 84.65 0.46 0.86 16
16 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16
17 Si 0.97 44.11 29.54 68.60 2.03 46.13 16
18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16
20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16
21 C -0.13 -3.14 4.66 30.59 0.14 -2.99 16
22 C -0.11 -2.01 4.93 30.59 0.15 -1.86 16
23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16
25 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16
26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
27 H 0.07 0.85 6.43 -2.39 -0.02 0.84 16
28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16
30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
32 H 0.08 1.64 4.81 -2.39 -0.01 1.63 16
33 H 0.04 1.41 6.15 -2.39 -0.01 1.39 16
34 H 0.41 7.81 8.49 -92.71 -0.79 7.02 16
35 H 0.40 12.55 8.49 -92.71 -0.79 11.77 16
36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
37 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16
38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16
39 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16
40 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16
41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
42 H 0.05 1.62 6.17 -2.39 -0.01 1.61 16
43 H 0.06 1.21 6.43 -2.39 -0.02 1.20 16
44 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
Total: -1.00 -68.16 337.40 1.32 -66.84
By element:
Atomic # 1 Polarization: 22.95 SS G_CDS: -0.59 Total: 22.36 kcal
Atomic # 6 Polarization: -8.04 SS G_CDS: 4.54 Total: -3.50 kcal
Atomic # 7 Polarization: -100.26 SS G_CDS: -4.61 Total: -104.87 kcal
Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.97 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal
Total: -68.16 1.32 -66.84 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000612370737.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.221 kcal
(2) G-P(sol) polarization free energy of solvation -68.157 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds