Wall clock time and date at job start Mon Mar 30 2020 00:26:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50700 * 109.46979 * 2 1
4 4 N 1.30831 * 125.96308 * 265.00103 * 3 2 1
5 5 C 1.33244 * 109.82727 * 179.74218 * 4 3 2
6 6 C 1.50699 * 125.52281 * 179.97438 * 5 4 3
7 7 N 1.46903 * 109.47447 * 89.99217 * 6 5 4
8 8 C 1.46894 * 110.99899 * 292.10033 * 7 6 5
9 9 C 1.50703 * 109.46732 * 164.07220 * 8 7 6
10 10 H 1.07994 * 120.00202 * 2.73722 * 9 8 7
11 11 C 1.37877 * 119.99694 * 182.74340 * 9 8 7
12 12 N 1.31513 * 120.00461 * 359.97438 * 11 9 8
13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 8
14 14 H 1.48494 * 109.47595 * 89.99759 * 13 11 9
15 15 H 1.48507 * 109.47055 * 210.00031 * 13 11 9
16 16 H 1.48499 * 109.46916 * 329.99316 * 13 11 9
17 17 C 1.46901 * 110.99734 * 168.14247 * 7 6 5
18 18 C 1.52994 * 109.47352 * 282.34036 * 17 7 6
19 19 O 1.42893 * 109.47471 * 67.61521 * 18 17 7
20 20 C 1.42895 * 114.00507 * 180.02562 * 19 18 17
21 21 N 1.30708 * 108.94588 * 359.97438 * 5 4 3
22 22 N 1.34436 * 125.96077 * 84.69484 * 3 2 1
23 23 H 0.97003 * 126.82069 * 0.26126 * 22 3 2
24 24 H 1.09002 * 109.46958 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47107 * 299.99554 * 1 2 3
26 26 H 1.08994 * 109.47124 * 60.00029 * 1 2 3
27 27 H 1.09002 * 109.47107 * 240.00446 * 2 1 3
28 28 H 1.08999 * 109.47591 * 119.99993 * 2 1 3
29 29 H 1.09000 * 109.46939 * 209.99730 * 6 5 4
30 30 H 1.09002 * 109.46982 * 329.99244 * 6 5 4
31 31 H 1.08998 * 109.47115 * 284.06868 * 8 7 6
32 32 H 1.09000 * 109.47161 * 44.07278 * 8 7 6
33 33 H 0.96998 * 120.00695 * 180.02562 * 12 11 9
34 34 H 1.08997 * 109.47122 * 42.34188 * 17 7 6
35 35 H 1.09003 * 109.46819 * 162.33704 * 17 7 6
36 36 H 1.09007 * 109.46847 * 187.61781 * 18 17 7
37 37 H 1.09000 * 109.47568 * 307.61128 * 18 17 7
38 38 H 1.08995 * 109.47765 * 180.02562 * 20 19 18
39 39 H 1.09010 * 109.46982 * 299.99895 * 20 19 18
40 40 H 1.08997 * 109.47234 * 59.99484 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.3754 2.1145 -1.0549
5 6 2.7663 3.3338 -0.6865
6 6 3.2359 4.4215 -1.6179
7 7 2.0864 5.2300 -2.0457
8 6 1.1860 4.4511 -2.9061
9 6 -0.1447 5.1514 -3.0051
10 1 -0.2913 6.1039 -2.5175
11 6 -1.1752 4.5761 -3.7180
12 7 -0.9967 3.4165 -4.3121
13 14 -2.8245 5.4446 -3.8413
14 1 -2.8285 6.3330 -5.0311
15 1 -3.9064 4.4359 -3.9731
16 1 -3.0498 6.2550 -2.6175
17 6 2.5283 6.4577 -2.7206
18 6 2.9901 7.4759 -1.6762
19 8 4.1826 7.0044 -1.0459
20 6 4.7001 7.8860 -0.0475
21 7 2.6764 3.4336 0.6137
22 7 2.2006 2.1987 1.0835
23 1 2.0275 1.9553 2.0064
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8899
27 1 1.8934 -0.5138 -0.8900
28 1 1.8934 -0.5138 0.8899
29 1 3.9549 5.0570 -1.1011
30 1 3.7094 3.9727 -2.4911
31 1 1.6230 4.3591 -3.9004
32 1 1.0433 3.4586 -2.4787
33 1 -1.7215 3.0119 -4.8140
34 1 3.3549 6.2257 -3.3921
35 1 1.7006 6.8751 -3.2940
36 1 3.1894 8.4306 -2.1630
37 1 2.2100 7.6065 -0.9262
38 1 5.6050 7.4569 0.3825
39 1 4.9349 8.8495 -0.5001
40 1 3.9553 8.0247 0.7361
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000612432865.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:26:18
Heat of formation + Delta-G solvation = 41.096690 kcal
Electronic energy + Delta-G solvation = -21122.493518 eV
Core-core repulsion = 17974.438765 eV
Total energy + Delta-G solvation = -3148.054753 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.164 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.61655 -37.92681 -36.07310 -33.99048 -32.49790 -32.04372 -30.12283 -29.20358
-27.41739 -26.13379 -24.48936 -24.11810 -22.28335 -20.93901 -20.23178 -19.34674
-17.41879 -16.38999 -16.16387 -15.53270 -15.29456 -14.89612 -14.54767 -14.42583
-14.15959 -13.72585 -13.57496 -13.09734 -12.45594 -12.12619 -11.96437 -11.83035
-11.66739 -11.36407 -11.35387 -11.22801 -10.93850 -10.85942 -10.67092 -10.61227
-10.25803 -9.82864 -9.48961 -9.42174 -9.16734 -9.11125 -8.90343 -8.31625
-7.15826 -5.90658 -3.91668 2.08608 3.07582 3.35416 3.41011 3.42233
3.46698 4.15639 4.40459 4.50443 4.96020 5.03199 5.25569 5.31582
5.42697 5.43794 5.46514 5.56107 5.64991 5.78248 5.82721 5.85441
5.86724 5.97519 6.05048 6.27026 6.38596 6.39898 6.47424 6.67688
6.84622 7.00837 7.42917 7.48839 7.50912 7.55414 7.90936 8.27381
8.33819 8.65194 8.70845 9.15750 9.70593 11.19339
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.009731 B = 0.009067 C = 0.005100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2876.585851 B = 3087.494438 C = 5488.626166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.041 4.041
3 C 0.275 3.725
4 N -0.521 5.521
5 C 0.259 3.741
6 C 0.137 3.863
7 N -0.528 5.528
8 C 0.185 3.815
9 C -0.505 4.505
10 H 0.059 0.941
11 C 0.056 3.944
12 N -0.893 5.893
13 Si 0.892 3.108
14 H -0.282 1.282
15 H -0.288 1.288
16 H -0.275 1.275
17 C 0.066 3.934
18 C 0.066 3.934
19 O -0.387 6.387
20 C 0.033 3.967
21 N -0.308 5.308
22 N -0.493 5.493
23 H 0.432 0.568
24 H 0.066 0.934
25 H 0.052 0.948
26 H 0.073 0.927
27 H 0.100 0.900
28 H 0.080 0.920
29 H 0.110 0.890
30 H 0.046 0.954
31 H -0.011 1.011
32 H 0.052 0.948
33 H 0.259 0.741
34 H 0.032 0.968
35 H 0.100 0.900
36 H 0.043 0.957
37 H 0.057 0.943
38 H 0.078 0.922
39 H 0.033 0.967
40 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.987 -1.501 9.765 12.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.081 4.081
3 C -0.004 4.004
4 N -0.249 5.249
5 C -0.024 4.024
6 C 0.007 3.993
7 N -0.254 5.254
8 C 0.060 3.940
9 C -0.543 4.543
10 H 0.078 0.922
11 C -0.145 4.145
12 N -0.533 5.533
13 Si 0.720 3.280
14 H -0.208 1.208
15 H -0.214 1.214
16 H -0.200 1.200
17 C -0.063 4.063
18 C -0.010 4.010
19 O -0.306 6.306
20 C -0.063 4.063
21 N -0.137 5.137
22 N -0.211 5.211
23 H 0.276 0.724
24 H 0.085 0.915
25 H 0.071 0.929
26 H 0.092 0.908
27 H 0.119 0.881
28 H 0.099 0.901
29 H 0.128 0.872
30 H 0.064 0.936
31 H 0.007 0.993
32 H 0.070 0.930
33 H 0.069 0.931
34 H 0.051 0.949
35 H 0.118 0.882
36 H 0.061 0.939
37 H 0.075 0.925
38 H 0.096 0.904
39 H 0.052 0.948
40 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 7.919 -1.103 10.010 12.811
hybrid contribution -0.972 0.126 -0.049 0.981
sum 6.948 -0.977 9.961 12.184
Atomic orbital electron populations
1.21761 0.93251 1.02384 1.03464 1.20096 0.96951 0.86758 1.04304
1.24305 0.96798 0.96030 0.83249 1.70449 1.20567 1.05107 1.28797
1.24179 0.95711 0.92625 0.89844 1.20567 0.93773 0.90459 0.94499
1.62032 1.14130 1.05765 1.43430 1.19925 0.90065 0.94504 0.89536
1.21171 0.96253 1.05935 1.30990 0.92230 1.24958 0.98609 0.95028
0.95924 1.69985 1.32497 1.16629 1.34170 0.86603 0.83856 0.79270
0.78278 1.20788 1.21372 1.19996 1.22050 0.99238 0.91293 0.93700
1.22769 0.86214 0.96228 0.95832 1.87851 1.42902 1.45889 1.54004
1.22638 0.98699 0.93637 0.91362 1.77961 1.23011 0.99590 1.13147
1.47957 1.52858 1.10453 1.09843 0.72427 0.91496 0.92862 0.90759
0.88135 0.90115 0.87225 0.93578 0.99298 0.92960 0.93146 0.94945
0.88173 0.93907 0.92471 0.90381 0.94809 0.94330
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.85 9.89 37.16 0.37 -1.49 16
2 C -0.04 -0.49 6.56 -27.88 -0.18 -0.68 16
3 C 0.28 4.65 7.49 -155.69 -1.17 3.49 16
4 N -0.52 -11.12 10.10 -8.16 -0.08 -11.20 16
5 C 0.26 5.61 6.87 -156.86 -1.08 4.53 16
6 C 0.14 2.91 5.39 -4.97 -0.03 2.88 16
7 N -0.53 -12.19 4.35 -237.52 -1.03 -13.22 16
8 C 0.18 5.05 4.58 -4.98 -0.02 5.03 16
9 C -0.50 -14.60 8.37 -34.44 -0.29 -14.88 16
10 H 0.06 1.70 7.64 -52.49 -0.40 1.30 16
11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
12 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16
13 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16
14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
17 C 0.07 1.30 5.36 -3.83 -0.02 1.28 16
18 C 0.07 1.10 6.25 37.15 0.23 1.34 16
19 O -0.39 -6.35 7.90 -35.23 -0.28 -6.63 16
20 C 0.03 0.41 11.01 101.05 1.11 1.53 16
21 N -0.31 -6.18 12.79 32.42 0.41 -5.77 16
22 N -0.49 -7.86 7.45 32.62 0.24 -7.62 16
23 H 0.43 4.95 8.96 -182.34 -1.63 3.31 16
24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16
28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.11 2.18 5.16 -51.93 -0.27 1.91 16
30 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16
31 H -0.01 -0.32 8.05 -51.93 -0.42 -0.73 16
32 H 0.05 1.56 6.16 -51.93 -0.32 1.24 16
33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
34 H 0.03 0.62 7.97 -51.93 -0.41 0.20 16
35 H 0.10 2.08 7.00 -51.93 -0.36 1.72 16
36 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16
37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
39 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16
40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 332.74 15.07 5.01 5.01
Total: -1.00 -34.86 332.74 -8.78 -43.64
By element:
Atomic # 1 Polarization: 8.17 SS G_CDS: -7.60 Total: 0.57 kcal
Atomic # 6 Polarization: 5.72 SS G_CDS: -1.17 Total: 4.55 kcal
Atomic # 7 Polarization: -64.49 SS G_CDS: 0.28 Total: -64.21 kcal
Atomic # 8 Polarization: -6.35 SS G_CDS: -0.28 Total: -6.63 kcal
Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -34.86 -8.78 -43.64 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000612432865.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.735 kcal
(2) G-P(sol) polarization free energy of solvation -34.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.874 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds