Wall clock time and date at job start Mon Mar 30 2020 00:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46979 * 2 1 4 4 N 1.30831 * 125.96308 * 265.00103 * 3 2 1 5 5 C 1.33244 * 109.82727 * 179.74218 * 4 3 2 6 6 C 1.50699 * 125.52281 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47447 * 89.99217 * 6 5 4 8 8 C 1.46894 * 110.99899 * 292.10033 * 7 6 5 9 9 C 1.50703 * 109.46732 * 164.07220 * 8 7 6 10 10 H 1.07994 * 120.00202 * 2.73722 * 9 8 7 11 11 C 1.37877 * 119.99694 * 182.74340 * 9 8 7 12 12 N 1.31513 * 120.00461 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47595 * 89.99759 * 13 11 9 15 15 H 1.48507 * 109.47055 * 210.00031 * 13 11 9 16 16 H 1.48499 * 109.46916 * 329.99316 * 13 11 9 17 17 C 1.46901 * 110.99734 * 168.14247 * 7 6 5 18 18 C 1.52994 * 109.47352 * 282.34036 * 17 7 6 19 19 O 1.42893 * 109.47471 * 67.61521 * 18 17 7 20 20 C 1.42895 * 114.00507 * 180.02562 * 19 18 17 21 21 N 1.30708 * 108.94588 * 359.97438 * 5 4 3 22 22 N 1.34436 * 125.96077 * 84.69484 * 3 2 1 23 23 H 0.97003 * 126.82069 * 0.26126 * 22 3 2 24 24 H 1.09002 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47107 * 299.99554 * 1 2 3 26 26 H 1.08994 * 109.47124 * 60.00029 * 1 2 3 27 27 H 1.09002 * 109.47107 * 240.00446 * 2 1 3 28 28 H 1.08999 * 109.47591 * 119.99993 * 2 1 3 29 29 H 1.09000 * 109.46939 * 209.99730 * 6 5 4 30 30 H 1.09002 * 109.46982 * 329.99244 * 6 5 4 31 31 H 1.08998 * 109.47115 * 284.06868 * 8 7 6 32 32 H 1.09000 * 109.47161 * 44.07278 * 8 7 6 33 33 H 0.96998 * 120.00695 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47122 * 42.34188 * 17 7 6 35 35 H 1.09003 * 109.46819 * 162.33704 * 17 7 6 36 36 H 1.09007 * 109.46847 * 187.61781 * 18 17 7 37 37 H 1.09000 * 109.47568 * 307.61128 * 18 17 7 38 38 H 1.08995 * 109.47765 * 180.02562 * 20 19 18 39 39 H 1.09010 * 109.46982 * 299.99895 * 20 19 18 40 40 H 1.08997 * 109.47234 * 59.99484 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3754 2.1145 -1.0549 5 6 2.7663 3.3338 -0.6865 6 6 3.2359 4.4215 -1.6179 7 7 2.0864 5.2300 -2.0457 8 6 1.1860 4.4511 -2.9061 9 6 -0.1447 5.1514 -3.0051 10 1 -0.2913 6.1039 -2.5175 11 6 -1.1752 4.5761 -3.7180 12 7 -0.9967 3.4165 -4.3121 13 14 -2.8245 5.4446 -3.8413 14 1 -2.8285 6.3330 -5.0311 15 1 -3.9064 4.4359 -3.9731 16 1 -3.0498 6.2550 -2.6175 17 6 2.5283 6.4577 -2.7206 18 6 2.9901 7.4759 -1.6762 19 8 4.1826 7.0044 -1.0459 20 6 4.7001 7.8860 -0.0475 21 7 2.6764 3.4336 0.6137 22 7 2.2006 2.1987 1.0835 23 1 2.0275 1.9553 2.0064 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9549 5.0570 -1.1011 30 1 3.7094 3.9727 -2.4911 31 1 1.6230 4.3591 -3.9004 32 1 1.0433 3.4586 -2.4787 33 1 -1.7215 3.0119 -4.8140 34 1 3.3549 6.2257 -3.3921 35 1 1.7006 6.8751 -3.2940 36 1 3.1894 8.4306 -2.1630 37 1 2.2100 7.6065 -0.9262 38 1 5.6050 7.4569 0.3825 39 1 4.9349 8.8495 -0.5001 40 1 3.9553 8.0247 0.7361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612432865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:18 Heat of formation + Delta-G solvation = 41.096690 kcal Electronic energy + Delta-G solvation = -21122.493518 eV Core-core repulsion = 17974.438765 eV Total energy + Delta-G solvation = -3148.054753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61655 -37.92681 -36.07310 -33.99048 -32.49790 -32.04372 -30.12283 -29.20358 -27.41739 -26.13379 -24.48936 -24.11810 -22.28335 -20.93901 -20.23178 -19.34674 -17.41879 -16.38999 -16.16387 -15.53270 -15.29456 -14.89612 -14.54767 -14.42583 -14.15959 -13.72585 -13.57496 -13.09734 -12.45594 -12.12619 -11.96437 -11.83035 -11.66739 -11.36407 -11.35387 -11.22801 -10.93850 -10.85942 -10.67092 -10.61227 -10.25803 -9.82864 -9.48961 -9.42174 -9.16734 -9.11125 -8.90343 -8.31625 -7.15826 -5.90658 -3.91668 2.08608 3.07582 3.35416 3.41011 3.42233 3.46698 4.15639 4.40459 4.50443 4.96020 5.03199 5.25569 5.31582 5.42697 5.43794 5.46514 5.56107 5.64991 5.78248 5.82721 5.85441 5.86724 5.97519 6.05048 6.27026 6.38596 6.39898 6.47424 6.67688 6.84622 7.00837 7.42917 7.48839 7.50912 7.55414 7.90936 8.27381 8.33819 8.65194 8.70845 9.15750 9.70593 11.19339 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.009067 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.585851 B = 3087.494438 C = 5488.626166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.041 4.041 3 C 0.275 3.725 4 N -0.521 5.521 5 C 0.259 3.741 6 C 0.137 3.863 7 N -0.528 5.528 8 C 0.185 3.815 9 C -0.505 4.505 10 H 0.059 0.941 11 C 0.056 3.944 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.275 1.275 17 C 0.066 3.934 18 C 0.066 3.934 19 O -0.387 6.387 20 C 0.033 3.967 21 N -0.308 5.308 22 N -0.493 5.493 23 H 0.432 0.568 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.046 0.954 31 H -0.011 1.011 32 H 0.052 0.948 33 H 0.259 0.741 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 -1.501 9.765 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.081 4.081 3 C -0.004 4.004 4 N -0.249 5.249 5 C -0.024 4.024 6 C 0.007 3.993 7 N -0.254 5.254 8 C 0.060 3.940 9 C -0.543 4.543 10 H 0.078 0.922 11 C -0.145 4.145 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.063 4.063 18 C -0.010 4.010 19 O -0.306 6.306 20 C -0.063 4.063 21 N -0.137 5.137 22 N -0.211 5.211 23 H 0.276 0.724 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.007 0.993 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.118 0.882 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.919 -1.103 10.010 12.811 hybrid contribution -0.972 0.126 -0.049 0.981 sum 6.948 -0.977 9.961 12.184 Atomic orbital electron populations 1.21761 0.93251 1.02384 1.03464 1.20096 0.96951 0.86758 1.04304 1.24305 0.96798 0.96030 0.83249 1.70449 1.20567 1.05107 1.28797 1.24179 0.95711 0.92625 0.89844 1.20567 0.93773 0.90459 0.94499 1.62032 1.14130 1.05765 1.43430 1.19925 0.90065 0.94504 0.89536 1.21171 0.96253 1.05935 1.30990 0.92230 1.24958 0.98609 0.95028 0.95924 1.69985 1.32497 1.16629 1.34170 0.86603 0.83856 0.79270 0.78278 1.20788 1.21372 1.19996 1.22050 0.99238 0.91293 0.93700 1.22769 0.86214 0.96228 0.95832 1.87851 1.42902 1.45889 1.54004 1.22638 0.98699 0.93637 0.91362 1.77961 1.23011 0.99590 1.13147 1.47957 1.52858 1.10453 1.09843 0.72427 0.91496 0.92862 0.90759 0.88135 0.90115 0.87225 0.93578 0.99298 0.92960 0.93146 0.94945 0.88173 0.93907 0.92471 0.90381 0.94809 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.89 37.16 0.37 -1.49 16 2 C -0.04 -0.49 6.56 -27.88 -0.18 -0.68 16 3 C 0.28 4.65 7.49 -155.69 -1.17 3.49 16 4 N -0.52 -11.12 10.10 -8.16 -0.08 -11.20 16 5 C 0.26 5.61 6.87 -156.86 -1.08 4.53 16 6 C 0.14 2.91 5.39 -4.97 -0.03 2.88 16 7 N -0.53 -12.19 4.35 -237.52 -1.03 -13.22 16 8 C 0.18 5.05 4.58 -4.98 -0.02 5.03 16 9 C -0.50 -14.60 8.37 -34.44 -0.29 -14.88 16 10 H 0.06 1.70 7.64 -52.49 -0.40 1.30 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 13 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.07 1.30 5.36 -3.83 -0.02 1.28 16 18 C 0.07 1.10 6.25 37.15 0.23 1.34 16 19 O -0.39 -6.35 7.90 -35.23 -0.28 -6.63 16 20 C 0.03 0.41 11.01 101.05 1.11 1.53 16 21 N -0.31 -6.18 12.79 32.42 0.41 -5.77 16 22 N -0.49 -7.86 7.45 32.62 0.24 -7.62 16 23 H 0.43 4.95 8.96 -182.34 -1.63 3.31 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.11 2.18 5.16 -51.93 -0.27 1.91 16 30 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 31 H -0.01 -0.32 8.05 -51.93 -0.42 -0.73 16 32 H 0.05 1.56 6.16 -51.93 -0.32 1.24 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.03 0.62 7.97 -51.93 -0.41 0.20 16 35 H 0.10 2.08 7.00 -51.93 -0.36 1.72 16 36 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -34.86 332.74 -8.78 -43.64 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.60 Total: 0.57 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.17 Total: 4.55 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: 0.28 Total: -64.21 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.28 Total: -6.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.86 -8.78 -43.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612432865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.735 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds