Wall clock time and date at job start Mon Mar 30 2020 00:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46979 * 2 1 4 4 N 1.30831 * 125.96308 * 265.00103 * 3 2 1 5 5 C 1.33244 * 109.82727 * 179.74218 * 4 3 2 6 6 C 1.50699 * 125.52281 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47447 * 89.99217 * 6 5 4 8 8 C 1.46894 * 110.99899 * 292.10033 * 7 6 5 9 9 C 1.50703 * 109.46732 * 164.07220 * 8 7 6 10 10 H 1.07994 * 120.00202 * 2.73722 * 9 8 7 11 11 C 1.37877 * 119.99694 * 182.74340 * 9 8 7 12 12 N 1.31513 * 120.00461 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99910 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47595 * 89.99759 * 13 11 9 15 15 H 1.48507 * 109.47055 * 210.00031 * 13 11 9 16 16 H 1.48499 * 109.46916 * 329.99316 * 13 11 9 17 17 C 1.46901 * 110.99734 * 168.14247 * 7 6 5 18 18 C 1.52994 * 109.47352 * 282.34036 * 17 7 6 19 19 O 1.42893 * 109.47471 * 67.61521 * 18 17 7 20 20 C 1.42895 * 114.00507 * 180.02562 * 19 18 17 21 21 N 1.30708 * 108.94588 * 359.97438 * 5 4 3 22 22 N 1.34436 * 125.96077 * 84.69484 * 3 2 1 23 23 H 0.97003 * 126.82069 * 0.26126 * 22 3 2 24 24 H 1.09002 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47107 * 299.99554 * 1 2 3 26 26 H 1.08994 * 109.47124 * 60.00029 * 1 2 3 27 27 H 1.09002 * 109.47107 * 240.00446 * 2 1 3 28 28 H 1.08999 * 109.47591 * 119.99993 * 2 1 3 29 29 H 1.09000 * 109.46939 * 209.99730 * 6 5 4 30 30 H 1.09002 * 109.46982 * 329.99244 * 6 5 4 31 31 H 1.08998 * 109.47115 * 284.06868 * 8 7 6 32 32 H 1.09000 * 109.47161 * 44.07278 * 8 7 6 33 33 H 0.96998 * 120.00695 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47122 * 42.34188 * 17 7 6 35 35 H 1.09003 * 109.46819 * 162.33704 * 17 7 6 36 36 H 1.09007 * 109.46847 * 187.61781 * 18 17 7 37 37 H 1.09000 * 109.47568 * 307.61128 * 18 17 7 38 38 H 1.08995 * 109.47765 * 180.02562 * 20 19 18 39 39 H 1.09010 * 109.46982 * 299.99895 * 20 19 18 40 40 H 1.08997 * 109.47234 * 59.99484 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3754 2.1145 -1.0549 5 6 2.7663 3.3338 -0.6865 6 6 3.2359 4.4215 -1.6179 7 7 2.0864 5.2300 -2.0457 8 6 1.1860 4.4511 -2.9061 9 6 -0.1447 5.1514 -3.0051 10 1 -0.2913 6.1039 -2.5175 11 6 -1.1752 4.5761 -3.7180 12 7 -0.9967 3.4165 -4.3121 13 14 -2.8245 5.4446 -3.8413 14 1 -2.8285 6.3330 -5.0311 15 1 -3.9064 4.4359 -3.9731 16 1 -3.0498 6.2550 -2.6175 17 6 2.5283 6.4577 -2.7206 18 6 2.9901 7.4759 -1.6762 19 8 4.1826 7.0044 -1.0459 20 6 4.7001 7.8860 -0.0475 21 7 2.6764 3.4336 0.6137 22 7 2.2006 2.1987 1.0835 23 1 2.0275 1.9553 2.0064 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9549 5.0570 -1.1011 30 1 3.7094 3.9727 -2.4911 31 1 1.6230 4.3591 -3.9004 32 1 1.0433 3.4586 -2.4787 33 1 -1.7215 3.0119 -4.8140 34 1 3.3549 6.2257 -3.3921 35 1 1.7006 6.8751 -3.2940 36 1 3.1894 8.4306 -2.1630 37 1 2.2100 7.6065 -0.9262 38 1 5.6050 7.4569 0.3825 39 1 4.9349 8.8495 -0.5001 40 1 3.9553 8.0247 0.7361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612432865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:17 Heat of formation + Delta-G solvation = 15.420374 kcal Electronic energy + Delta-G solvation = -21123.606927 eV Core-core repulsion = 17974.438765 eV Total energy + Delta-G solvation = -3149.168162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.07025 -39.36438 -37.66053 -35.22755 -34.60849 -33.52654 -31.53539 -30.78664 -29.31421 -27.35781 -26.20602 -25.27509 -24.13927 -22.44907 -21.64813 -21.01582 -18.85498 -18.45590 -17.47550 -17.05743 -16.83428 -16.44126 -16.13260 -15.74017 -15.51849 -15.24430 -14.97915 -14.73675 -14.03842 -13.62313 -13.54608 -13.23911 -13.14475 -13.00433 -12.76289 -12.70976 -12.53842 -12.43569 -12.23760 -12.03811 -11.97502 -11.62049 -11.27766 -10.99991 -10.91001 -10.56730 -10.42519 -10.40008 -9.03987 -8.14037 -6.24489 0.65897 1.39153 1.41118 1.52199 1.80820 1.89061 2.41839 2.93107 3.12751 3.16929 3.46105 3.66777 3.91551 4.23849 4.25353 4.30073 4.39040 4.49998 4.57811 4.61784 4.66941 4.69498 4.77627 4.87899 4.93954 4.95377 5.06200 5.10476 5.27931 5.31607 5.38676 5.43508 5.47185 5.67924 6.11547 6.30999 6.31692 6.44249 6.60131 6.90787 7.23956 7.43335 8.96380 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.009067 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.585851 B = 3087.494438 C = 5488.626166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C 0.281 3.719 4 N -0.571 5.571 5 C 0.237 3.763 6 C 0.143 3.857 7 N -0.533 5.533 8 C 0.205 3.795 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.062 3.938 18 C 0.079 3.921 19 O -0.409 6.409 20 C 0.029 3.971 21 N -0.324 5.324 22 N -0.475 5.475 23 H 0.453 0.547 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.035 0.965 31 H -0.044 1.044 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 -1.163 11.460 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C 0.003 3.997 4 N -0.301 5.301 5 C -0.046 4.046 6 C 0.013 3.987 7 N -0.259 5.259 8 C 0.079 3.921 9 C -0.560 4.560 10 H 0.078 0.922 11 C -0.195 4.195 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.066 4.066 18 C 0.002 3.998 19 O -0.329 6.329 20 C -0.067 4.067 21 N -0.154 5.154 22 N -0.195 5.195 23 H 0.301 0.699 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.119 0.881 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.053 0.947 31 H -0.027 1.027 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.628 -0.756 11.750 14.029 hybrid contribution -0.813 -0.037 -0.503 0.957 sum 6.815 -0.793 11.247 13.174 Atomic orbital electron populations 1.21727 0.93397 1.03905 1.01323 1.20383 0.96511 0.83984 1.06812 1.25128 0.94894 0.97373 0.82354 1.70399 1.22522 1.05794 1.31352 1.24185 0.96958 0.93047 0.90421 1.20530 0.93193 0.90628 0.94313 1.61998 1.14978 1.06350 1.42533 1.19501 0.90674 0.93813 0.88147 1.21437 0.97181 1.06085 1.31302 0.92247 1.25881 1.02714 0.95689 0.95243 1.70130 1.33892 1.18160 1.34728 0.85448 0.78585 0.78198 0.78748 1.19448 1.20791 1.19298 1.22110 0.98876 0.90683 0.94902 1.22538 0.86326 0.96049 0.94843 1.87778 1.42504 1.47540 1.55061 1.22852 0.99098 0.94181 0.90598 1.77812 1.23498 1.01613 1.12468 1.47816 1.51683 1.09087 1.10917 0.69852 0.88156 0.92151 0.95640 0.88134 0.85039 0.85767 0.94686 1.02666 0.95834 0.92887 0.94545 0.89615 0.90621 0.93481 0.88831 0.92666 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.89 71.98 0.71 -2.68 16 2 C -0.04 -0.82 6.56 29.85 0.20 -0.63 16 3 C 0.28 9.37 7.49 138.22 1.04 10.40 16 4 N -0.57 -25.15 10.10 -179.72 -1.82 -26.97 16 5 C 0.24 10.52 6.87 138.63 0.95 11.48 16 6 C 0.14 6.30 5.39 85.56 0.46 6.76 16 7 N -0.53 -25.51 4.35 -905.38 -3.93 -29.45 16 8 C 0.20 11.78 4.58 85.56 0.39 12.18 16 9 C -0.52 -31.03 8.37 25.60 0.21 -30.81 16 10 H 0.06 3.45 7.64 -2.91 -0.02 3.43 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 13 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 C 0.06 2.51 5.36 86.30 0.46 2.98 16 18 C 0.08 2.56 6.25 71.98 0.45 3.01 16 19 O -0.41 -12.91 7.90 -148.98 -1.18 -14.08 16 20 C 0.03 0.65 11.01 113.37 1.25 1.90 16 21 N -0.32 -12.98 12.79 -51.34 -0.66 -13.64 16 22 N -0.47 -14.59 7.45 -50.70 -0.38 -14.97 16 23 H 0.45 9.35 8.96 -213.10 -1.91 7.44 16 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 28 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.12 5.01 5.16 -2.39 -0.01 5.00 16 30 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 31 H -0.04 -2.77 8.05 -2.39 -0.02 -2.79 16 32 H 0.02 1.49 6.16 -2.39 -0.01 1.47 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.04 1.42 7.97 -2.39 -0.02 1.40 16 35 H 0.09 3.67 7.00 -2.39 -0.02 3.65 16 36 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.80 332.74 0.06 -78.74 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.88 Total: 15.19 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.59 Total: 15.20 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -6.50 Total: -142.74 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.18 Total: -14.08 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -78.80 0.06 -78.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612432865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.165 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds