Wall clock time and date at job start Mon Mar 30 2020 01:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00195 * 2 1 4 4 H 1.48502 * 109.47557 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46787 * 299.99708 * 3 2 1 6 6 H 1.48496 * 109.47126 * 59.99482 * 3 2 1 7 7 C 1.38819 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00032 * 163.06508 * 7 2 1 9 9 N 1.36935 * 119.99722 * 343.06523 * 7 2 1 10 10 C 1.46925 * 120.63263 * 331.84149 * 9 7 2 11 11 C 1.53190 * 108.77684 * 233.63159 * 10 9 7 12 12 C 1.53042 * 109.30937 * 305.36318 * 11 10 9 13 13 N 1.46905 * 109.45914 * 181.38151 * 12 11 10 14 14 C 1.46904 * 110.99964 * 154.99724 * 13 12 11 15 15 C 1.52997 * 109.47121 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47239 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.45355 * 54.30239 * 16 15 14 18 18 C 1.54497 * 110.51297 * 176.90579 * 16 15 14 19 19 C 1.54481 * 104.06516 * 118.64661 * 18 16 15 20 20 O 1.44429 * 104.79844 * 23.97776 * 19 18 16 21 21 C 1.44637 * 105.37145 * 319.56402 * 20 19 18 22 22 C 1.53044 * 109.53781 * 61.36737 * 12 11 10 23 23 C 1.46922 * 120.63219 * 151.86056 * 9 7 2 24 24 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.58992 * 113.83884 * 10 9 7 26 26 H 1.09006 * 109.70282 * 353.48399 * 10 9 7 27 27 H 1.09003 * 109.50132 * 185.41234 * 11 10 9 28 28 H 1.09005 * 109.52713 * 65.32921 * 11 10 9 29 29 H 1.08997 * 109.46191 * 301.35873 * 12 11 10 30 30 H 1.00896 * 111.00606 * 278.95667 * 13 12 11 31 31 H 1.08996 * 109.47396 * 300.00487 * 14 13 12 32 32 H 1.09003 * 109.46346 * 60.00389 * 14 13 12 33 33 H 1.08996 * 109.47376 * 300.00490 * 15 14 13 34 34 H 1.09005 * 109.46808 * 60.00544 * 15 14 13 35 35 H 1.08998 * 110.51604 * 237.28903 * 18 16 15 36 36 H 1.09001 * 110.51513 * 359.86602 * 18 16 15 37 37 H 1.08998 * 110.37923 * 142.80772 * 19 18 16 38 38 H 1.09001 * 110.37372 * 265.15100 * 19 18 16 39 39 H 1.09000 * 110.34548 * 281.59541 * 21 20 19 40 40 H 1.09004 * 110.50608 * 159.18202 * 21 20 19 41 41 H 1.08995 * 109.50103 * 58.58639 * 22 12 11 42 42 H 1.08997 * 109.49458 * 178.68157 * 22 12 11 43 43 H 1.08998 * 109.59179 * 246.16069 * 23 9 7 44 44 H 1.09011 * 109.58412 * 6.44289 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2719 9 7 1.3701 -2.3622 0.3465 10 6 0.2263 -2.3398 1.2684 11 6 0.4983 -3.3179 2.4155 12 6 0.8133 -4.6998 1.8383 13 7 1.0423 -5.6483 2.9365 14 6 0.7625 -7.0258 2.5094 15 6 1.0110 -7.9823 3.6773 16 6 0.7202 -9.4170 3.2323 17 1 1.2948 -9.6627 2.3392 18 6 1.0377 -10.4119 4.3709 19 6 -0.3194 -11.0871 4.6688 20 8 -1.0788 -10.9430 3.4487 21 6 -0.7907 -9.6077 2.9733 22 6 2.0686 -4.6165 0.9667 23 6 1.8142 -3.6530 -0.1968 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6768 -2.6410 0.7376 26 1 0.0966 -1.3342 1.6687 27 1 -0.3821 -3.3828 3.0549 28 1 1.3478 -2.9658 3.0009 29 1 -0.0267 -5.0407 1.2332 30 1 1.9811 -5.5650 3.2965 31 1 -0.2771 -7.1036 2.1914 32 1 1.4173 -7.2885 1.6784 33 1 2.0505 -7.9047 3.9957 34 1 0.3559 -7.7194 4.5079 35 1 1.7674 -11.1509 4.0400 36 1 1.4041 -9.8820 5.2501 37 1 -0.1752 -12.1417 4.9036 38 1 -0.8232 -10.5797 5.4914 39 1 -1.3677 -8.8728 3.5347 40 1 -1.0062 -9.5270 1.9078 41 1 2.9035 -4.2520 1.5651 42 1 2.3057 -5.6056 0.5749 43 1 1.0407 -4.0615 -0.8471 44 1 2.7335 -3.5132 -0.7657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615131681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:13 Heat of formation + Delta-G solvation = -40.893216 kcal Electronic energy + Delta-G solvation = -20820.812771 eV Core-core repulsion = 17772.743012 eV Total energy + Delta-G solvation = -3048.069759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.74159 -38.13951 -35.72844 -33.80567 -31.99659 -30.51522 -29.88219 -29.07483 -26.96524 -24.56373 -23.48984 -22.28411 -21.85966 -21.30605 -20.45219 -19.17795 -16.90917 -16.64455 -15.95860 -15.78022 -15.08827 -14.85432 -14.55545 -14.24928 -13.79973 -13.50443 -13.44240 -13.08063 -12.90407 -12.69076 -12.32234 -12.05431 -11.81687 -11.71938 -11.36553 -11.16746 -10.94452 -10.90697 -10.76175 -10.71346 -10.67362 -10.21839 -10.17416 -10.02592 -9.95823 -9.70275 -9.42839 -8.47747 -8.05755 -6.65459 -5.77374 -3.19831 3.37756 3.45558 3.47790 3.71272 4.18783 4.35127 4.50734 4.52464 4.72745 4.88478 5.00045 5.09179 5.16754 5.31541 5.36460 5.42812 5.44465 5.50741 5.53861 5.58269 5.61667 5.68498 5.70246 5.77734 5.89336 6.01647 6.06272 6.15376 6.32688 6.50169 6.53492 6.62783 6.64009 6.71586 6.86427 6.95571 7.35154 7.40820 7.64758 7.71435 7.81479 8.47115 9.23279 9.86674 10.43701 11.31185 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055088 B = 0.003018 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.154119 B = 9276.119318 C = 9359.676827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.125 4.125 12 C 0.095 3.905 13 N -0.689 5.689 14 C 0.057 3.943 15 C -0.108 4.108 16 C -0.121 4.121 17 H 0.082 0.918 18 C -0.151 4.151 19 C 0.044 3.956 20 O -0.380 6.380 21 C 0.048 3.952 22 C -0.159 4.159 23 C 0.149 3.851 24 H 0.253 0.747 25 H 0.016 0.984 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.336 0.664 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.016 0.984 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -18.892 8.559 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.044 3.956 11 C -0.165 4.165 12 C -0.014 4.014 13 N -0.318 5.318 14 C -0.073 4.073 15 C -0.146 4.146 16 C -0.140 4.140 17 H 0.100 0.900 18 C -0.189 4.189 19 C -0.033 4.033 20 O -0.299 6.299 21 C -0.029 4.029 22 C -0.200 4.200 23 C 0.022 3.978 24 H 0.063 0.937 25 H 0.034 0.966 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.545 -18.807 8.724 20.739 hybrid contribution 1.385 0.825 -0.519 1.694 sum 1.930 -17.982 8.205 19.859 Atomic orbital electron populations 1.70044 1.05260 1.25365 1.54013 1.25051 0.95290 0.98408 1.00949 0.86235 0.79343 0.83994 0.77278 1.20302 1.21738 1.21531 1.19220 0.92521 0.84864 1.41556 0.91772 1.44077 1.35935 1.01421 1.50124 1.20796 0.88476 0.98290 0.87989 1.22179 1.00463 0.94138 0.99697 1.21531 0.96818 0.92933 0.90095 1.60745 1.32178 1.03754 1.35139 1.21984 1.00894 0.88696 0.95708 1.21634 1.02036 0.92086 0.98825 1.22539 0.97030 0.95494 0.98935 0.89960 1.23006 0.98228 0.98619 0.99069 1.23399 0.90650 1.01224 0.87987 1.89142 1.68847 1.32279 1.39636 1.23618 0.94251 0.84461 1.00561 1.22684 0.98476 0.98856 1.00002 1.20808 0.97486 0.86965 0.92522 0.93687 0.96567 0.89396 0.92776 0.92893 0.91413 0.84709 0.91274 0.95440 0.91781 0.90860 0.90797 0.90257 0.89341 0.92290 0.91700 0.89054 0.92292 0.93715 0.96662 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.19 55.49 0.62 -25.79 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 8 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -15.02 2.99 -172.32 -0.52 -15.53 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.12 -2.45 5.69 -26.61 -0.15 -2.60 16 12 C 0.10 1.61 2.43 -67.67 -0.16 1.45 16 13 N -0.69 -9.60 6.25 -106.68 -0.67 -10.26 16 14 C 0.06 0.65 5.35 -3.82 -0.02 0.63 16 15 C -0.11 -1.00 4.68 -26.73 -0.13 -1.12 16 16 C -0.12 -1.03 3.13 -89.05 -0.28 -1.31 16 17 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.15 -1.13 6.74 -25.17 -0.17 -1.30 16 19 C 0.04 0.36 7.64 37.93 0.29 0.65 16 20 O -0.38 -4.20 11.65 -35.23 -0.41 -4.61 16 21 C 0.05 0.46 6.43 37.94 0.24 0.70 16 22 C -0.16 -2.76 5.33 -26.61 -0.14 -2.90 16 23 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.20 7.80 -51.93 -0.40 0.80 16 30 H 0.34 4.45 8.48 -39.29 -0.33 4.12 16 31 H 0.07 0.82 7.47 -51.93 -0.39 0.43 16 32 H 0.03 0.32 7.41 -51.93 -0.38 -0.06 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.53 7.73 -51.93 -0.40 0.12 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.62 7.78 -51.93 -0.40 0.21 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.68 7.42 -51.93 -0.39 0.30 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.08 7.93 -51.92 -0.41 0.67 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -29.80 338.58 -9.73 -39.53 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.04 Total: 0.52 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.79 Total: -5.73 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.56 Total: -51.58 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.41 Total: -4.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.80 -9.73 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615131681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.361 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds