Wall clock time and date at job start Mon Mar 30 2020 01:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00195 * 2 1 4 4 H 1.48502 * 109.47557 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46787 * 299.99708 * 3 2 1 6 6 H 1.48496 * 109.47126 * 59.99482 * 3 2 1 7 7 C 1.38819 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00032 * 163.06508 * 7 2 1 9 9 N 1.36935 * 119.99722 * 343.06523 * 7 2 1 10 10 C 1.46925 * 120.63263 * 331.84149 * 9 7 2 11 11 C 1.53190 * 108.77684 * 233.63159 * 10 9 7 12 12 C 1.53042 * 109.30937 * 305.36318 * 11 10 9 13 13 N 1.46905 * 109.45914 * 181.38151 * 12 11 10 14 14 C 1.46904 * 110.99964 * 154.99724 * 13 12 11 15 15 C 1.52997 * 109.47121 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47239 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.45355 * 54.30239 * 16 15 14 18 18 C 1.54497 * 110.51297 * 176.90579 * 16 15 14 19 19 C 1.54481 * 104.06516 * 118.64661 * 18 16 15 20 20 O 1.44429 * 104.79844 * 23.97776 * 19 18 16 21 21 C 1.44637 * 105.37145 * 319.56402 * 20 19 18 22 22 C 1.53044 * 109.53781 * 61.36737 * 12 11 10 23 23 C 1.46922 * 120.63219 * 151.86056 * 9 7 2 24 24 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.58992 * 113.83884 * 10 9 7 26 26 H 1.09006 * 109.70282 * 353.48399 * 10 9 7 27 27 H 1.09003 * 109.50132 * 185.41234 * 11 10 9 28 28 H 1.09005 * 109.52713 * 65.32921 * 11 10 9 29 29 H 1.08997 * 109.46191 * 301.35873 * 12 11 10 30 30 H 1.00896 * 111.00606 * 278.95667 * 13 12 11 31 31 H 1.08996 * 109.47396 * 300.00487 * 14 13 12 32 32 H 1.09003 * 109.46346 * 60.00389 * 14 13 12 33 33 H 1.08996 * 109.47376 * 300.00490 * 15 14 13 34 34 H 1.09005 * 109.46808 * 60.00544 * 15 14 13 35 35 H 1.08998 * 110.51604 * 237.28903 * 18 16 15 36 36 H 1.09001 * 110.51513 * 359.86602 * 18 16 15 37 37 H 1.08998 * 110.37923 * 142.80772 * 19 18 16 38 38 H 1.09001 * 110.37372 * 265.15100 * 19 18 16 39 39 H 1.09000 * 110.34548 * 281.59541 * 21 20 19 40 40 H 1.09004 * 110.50608 * 159.18202 * 21 20 19 41 41 H 1.08995 * 109.50103 * 58.58639 * 22 12 11 42 42 H 1.08997 * 109.49458 * 178.68157 * 22 12 11 43 43 H 1.08998 * 109.59179 * 246.16069 * 23 9 7 44 44 H 1.09011 * 109.58412 * 6.44289 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2719 9 7 1.3701 -2.3622 0.3465 10 6 0.2263 -2.3398 1.2684 11 6 0.4983 -3.3179 2.4155 12 6 0.8133 -4.6998 1.8383 13 7 1.0423 -5.6483 2.9365 14 6 0.7625 -7.0258 2.5094 15 6 1.0110 -7.9823 3.6773 16 6 0.7202 -9.4170 3.2323 17 1 1.2948 -9.6627 2.3392 18 6 1.0377 -10.4119 4.3709 19 6 -0.3194 -11.0871 4.6688 20 8 -1.0788 -10.9430 3.4487 21 6 -0.7907 -9.6077 2.9733 22 6 2.0686 -4.6165 0.9667 23 6 1.8142 -3.6530 -0.1968 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6768 -2.6410 0.7376 26 1 0.0966 -1.3342 1.6687 27 1 -0.3821 -3.3828 3.0549 28 1 1.3478 -2.9658 3.0009 29 1 -0.0267 -5.0407 1.2332 30 1 1.9811 -5.5650 3.2965 31 1 -0.2771 -7.1036 2.1914 32 1 1.4173 -7.2885 1.6784 33 1 2.0505 -7.9047 3.9957 34 1 0.3559 -7.7194 4.5079 35 1 1.7674 -11.1509 4.0400 36 1 1.4041 -9.8820 5.2501 37 1 -0.1752 -12.1417 4.9036 38 1 -0.8232 -10.5797 5.4914 39 1 -1.3677 -8.8728 3.5347 40 1 -1.0062 -9.5270 1.9078 41 1 2.9035 -4.2520 1.5651 42 1 2.3057 -5.6056 0.5749 43 1 1.0407 -4.0615 -0.8471 44 1 2.7335 -3.5132 -0.7657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615131681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:12 Heat of formation + Delta-G solvation = -60.029512 kcal Electronic energy + Delta-G solvation = -20821.642583 eV Core-core repulsion = 17772.743012 eV Total energy + Delta-G solvation = -3048.899571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46186 -39.62444 -37.06203 -35.06408 -33.57770 -31.90322 -31.32250 -30.27701 -28.07968 -26.29216 -24.37287 -23.79054 -23.14992 -22.57276 -21.23735 -20.76025 -18.76360 -17.44386 -16.98802 -16.65795 -16.55863 -16.07761 -15.79418 -15.52700 -15.32413 -14.89352 -14.82014 -14.61307 -14.12712 -13.82464 -13.52023 -13.22277 -13.00803 -12.98116 -12.64274 -12.62100 -12.38662 -12.36395 -12.06699 -11.93136 -11.88136 -11.66224 -11.59647 -11.44992 -11.35491 -11.06321 -10.73841 -10.56121 -9.24684 -8.69689 -7.88474 -5.34274 1.45516 1.47279 1.57986 2.50498 3.02221 3.20308 3.29991 3.64756 3.68846 3.84633 3.94889 4.05850 4.12842 4.22777 4.30278 4.34470 4.39162 4.47546 4.53194 4.61162 4.71438 4.76155 4.85649 4.86656 4.87412 4.92052 4.98009 4.98741 5.07227 5.13150 5.15974 5.26045 5.27314 5.32796 5.40188 5.51563 5.64154 5.73612 5.87158 6.16194 6.38797 6.55745 7.14009 7.85187 8.37113 9.18221 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055088 B = 0.003018 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.154119 B = 9276.119318 C = 9359.676827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.178 3.822 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.687 5.687 14 C 0.057 3.943 15 C -0.097 4.097 16 C -0.116 4.116 17 H 0.084 0.916 18 C -0.147 4.147 19 C 0.037 3.963 20 O -0.406 6.406 21 C 0.043 3.957 22 C -0.144 4.144 23 C 0.143 3.857 24 H 0.250 0.750 25 H -0.007 1.007 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.343 0.657 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.011 0.989 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 -20.358 9.505 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.394 4.394 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.052 3.948 11 C -0.151 4.151 12 C -0.003 4.003 13 N -0.317 5.317 14 C -0.072 4.072 15 C -0.134 4.134 16 C -0.135 4.135 17 H 0.102 0.898 18 C -0.185 4.185 19 C -0.039 4.039 20 O -0.326 6.326 21 C -0.033 4.033 22 C -0.184 4.184 23 C 0.017 3.983 24 H 0.059 0.941 25 H 0.011 0.989 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.029 0.971 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.053 -20.312 9.681 22.595 hybrid contribution 0.894 1.217 -0.839 1.728 sum 2.947 -19.095 8.841 21.248 Atomic orbital electron populations 1.70197 1.06728 1.25821 1.55409 1.25833 0.96073 1.01603 1.01233 0.85201 0.78612 0.79764 0.76826 1.19057 1.21863 1.21579 1.19547 0.92807 0.86100 1.40933 0.91658 1.44343 1.35980 1.02332 1.50840 1.20580 0.87608 0.97637 0.88995 1.21937 1.00644 0.94732 0.97763 1.21251 0.96414 0.92082 0.90595 1.60619 1.32836 1.04515 1.33684 1.22043 1.00724 0.87558 0.96845 1.21523 1.02551 0.91748 0.97627 1.22485 0.96212 0.95307 0.99528 0.89762 1.22998 0.97965 0.98487 0.99012 1.23595 0.90809 1.02340 0.87171 1.89115 1.69678 1.32884 1.40879 1.23675 0.95060 0.84017 1.00542 1.22510 0.98518 0.99061 0.98344 1.20980 0.97109 0.86089 0.94086 0.94078 0.98864 0.92893 0.91896 0.93304 0.92081 0.83833 0.91780 0.94988 0.90744 0.91180 0.89978 0.89142 0.88063 0.91810 0.91993 0.89096 0.92383 0.90772 0.97094 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 11.19 21.65 0.24 -56.03 16 2 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 3 Si 0.97 45.32 29.59 68.60 2.03 47.35 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 7 C -0.26 -14.75 9.58 84.04 0.81 -13.95 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 9 N -0.61 -31.29 2.99 -699.09 -2.09 -33.38 16 10 C 0.18 8.81 5.30 86.36 0.46 9.27 16 11 C -0.11 -4.29 5.69 30.67 0.17 -4.12 16 12 C 0.11 3.43 2.43 44.94 0.11 3.54 16 13 N -0.69 -17.35 6.25 -491.41 -3.07 -20.42 16 14 C 0.06 1.17 5.35 86.30 0.46 1.63 16 15 C -0.10 -1.51 4.68 30.59 0.14 -1.37 16 16 C -0.12 -1.70 3.13 -9.78 -0.03 -1.74 16 17 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 18 C -0.15 -1.79 6.74 31.61 0.21 -1.58 16 19 C 0.04 0.53 7.64 72.49 0.55 1.08 16 20 O -0.41 -8.49 11.65 -148.98 -1.74 -10.22 16 21 C 0.04 0.77 6.43 72.49 0.47 1.24 16 22 C -0.14 -4.67 5.33 30.67 0.16 -4.51 16 23 C 0.14 5.99 6.52 86.36 0.56 6.55 16 24 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.05 2.97 6.06 -2.38 -0.01 2.96 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.06 2.08 7.80 -2.39 -0.02 2.06 16 30 H 0.34 8.00 8.48 -89.70 -0.76 7.24 16 31 H 0.06 1.39 7.47 -2.39 -0.02 1.37 16 32 H 0.03 0.64 7.41 -2.39 -0.02 0.62 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.18 8.02 -2.38 -0.02 1.16 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.91 7.73 -2.39 -0.02 0.89 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.11 7.78 -2.39 -0.02 1.09 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 2.01 7.42 -2.39 -0.02 1.99 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.05 2.14 7.93 -2.38 -0.02 2.12 16 Total: -1.00 -64.51 338.58 0.06 -64.44 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.19 Total: 14.75 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.50 Total: -6.49 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -4.92 Total: -109.83 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.74 Total: -10.22 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.51 0.06 -64.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615131681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.414 kcal (2) G-P(sol) polarization free energy of solvation -64.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds