Wall clock time and date at job start Mon Mar 30 2020 01:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00016 * 2 1 4 4 H 1.48505 * 109.47424 * 270.00127 * 3 2 1 5 5 H 1.48501 * 109.47255 * 30.00400 * 3 2 1 6 6 H 1.48508 * 109.47107 * 150.00320 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99815 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00232 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47311 * 184.98550 * 9 7 2 11 11 C 1.46947 * 111.00212 * 295.19308 * 10 9 7 12 12 C 1.53053 * 109.36576 * 183.18608 * 11 10 9 13 13 N 1.46956 * 109.36372 * 301.60100 * 12 11 10 14 14 C 1.46901 * 111.00069 * 183.18829 * 13 12 11 15 15 C 1.52993 * 109.47246 * 169.99957 * 14 13 12 16 16 C 1.53000 * 109.47336 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.41992 * 307.31033 * 16 15 14 18 18 C 1.54481 * 110.37551 * 185.00075 * 16 15 14 19 19 C 1.54515 * 104.06311 * 217.19058 * 18 16 15 20 20 C 1.54486 * 104.06187 * 359.97438 * 19 18 16 21 21 O 1.44426 * 110.37122 * 69.61621 * 16 15 14 22 22 C 1.46947 * 110.88194 * 59.31849 * 13 12 11 23 23 C 1.46956 * 110.99686 * 58.99386 * 10 9 7 24 24 H 0.97005 * 120.00108 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47352 * 64.98781 * 9 7 2 26 26 H 1.09001 * 109.47455 * 304.98724 * 9 7 2 27 27 H 1.08997 * 109.48912 * 63.22013 * 11 10 9 28 28 H 1.09002 * 109.48993 * 303.15440 * 11 10 9 29 29 H 1.09000 * 109.49068 * 181.63087 * 12 11 10 30 30 H 1.08994 * 109.50484 * 61.57517 * 12 11 10 31 31 H 1.08999 * 109.47022 * 49.99652 * 14 13 12 32 32 H 1.08998 * 109.47059 * 289.99887 * 14 13 12 33 33 H 1.08999 * 109.47359 * 59.99901 * 15 14 13 34 34 H 1.09011 * 109.47315 * 300.00113 * 15 14 13 35 35 H 1.09001 * 110.51289 * 98.54098 * 18 16 15 36 36 H 1.09002 * 110.50653 * 335.82836 * 18 16 15 37 37 H 1.08991 * 110.51300 * 118.64164 * 19 18 16 38 38 H 1.08998 * 110.50559 * 241.21484 * 19 18 16 39 39 H 1.08993 * 110.36810 * 142.80940 * 20 19 18 40 40 H 1.08994 * 110.37473 * 265.04262 * 20 19 18 41 41 H 1.09005 * 109.48992 * 60.64895 * 22 13 12 42 42 H 1.09002 * 109.48993 * 180.71198 * 22 13 12 43 43 H 1.08999 * 109.48818 * 296.78073 * 23 10 9 44 44 H 1.09004 * 109.49113 * 56.84708 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5738 -0.1220 11 6 3.6265 -3.3705 1.0546 12 6 4.2215 -4.7749 0.9268 13 7 3.7302 -5.4017 -0.3082 14 6 4.2198 -6.7814 -0.4291 15 6 3.4970 -7.4798 -1.5826 16 6 4.0064 -8.9170 -1.7082 17 1 5.0942 -8.9304 -1.7757 18 6 3.3826 -9.6027 -2.9439 19 6 3.1431 -11.0585 -2.4846 20 6 3.6513 -11.0802 -1.0258 21 8 3.5627 -9.7077 -0.5840 22 6 4.1047 -4.6049 -1.4848 23 6 3.5098 -3.2006 -1.3570 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.7597 0.9302 26 1 3.8745 -0.6046 -0.8431 27 1 2.5405 -3.4399 1.1161 28 1 4.0123 -2.8927 1.9552 29 1 3.9208 -5.3766 1.7845 30 1 5.3088 -4.7078 0.8929 31 1 4.0260 -7.3184 0.4994 32 1 5.2919 -6.7706 -0.6256 33 1 3.6908 -6.9428 -2.5112 34 1 2.4248 -7.4906 -1.3862 35 1 4.0749 -9.5767 -3.7854 36 1 2.4390 -9.1260 -3.2095 37 1 2.0813 -11.3014 -2.5231 38 1 3.7153 -11.7522 -3.1006 39 1 3.0152 -11.7178 -0.4120 40 1 4.6839 -11.4271 -0.9888 41 1 5.1908 -4.5356 -1.5463 42 1 3.7190 -5.0828 -2.3853 43 1 2.4224 -3.2680 -1.3230 44 1 3.8105 -2.5989 -2.2148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615793448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:44 Heat of formation + Delta-G solvation = -40.672699 kcal Electronic energy + Delta-G solvation = -21009.140039 eV Core-core repulsion = 17961.079843 eV Total energy + Delta-G solvation = -3048.060197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69774 -38.64806 -35.55369 -32.81404 -32.28872 -31.77932 -30.29162 -28.75694 -26.88960 -24.82568 -23.02156 -22.78985 -21.54551 -21.10561 -20.75442 -19.00645 -16.79077 -16.60564 -16.14076 -15.81704 -15.40066 -14.67528 -14.28573 -14.19654 -14.14458 -13.89961 -13.85931 -13.11165 -12.76176 -12.53720 -12.29710 -12.02882 -11.95856 -11.68649 -11.60856 -11.29573 -11.06706 -10.95723 -10.85083 -10.71233 -10.55573 -10.41336 -10.10391 -10.03780 -9.92440 -9.81396 -9.43394 -8.56191 -7.98297 -7.15270 -6.06806 -4.06367 3.29475 3.37169 3.41357 3.70687 4.08870 4.39581 4.42392 4.55972 4.67890 4.86298 4.98267 5.00509 5.15134 5.23153 5.26468 5.32233 5.44865 5.48653 5.53526 5.57208 5.66225 5.70528 5.74825 5.81265 5.87678 5.96313 5.99984 6.12683 6.14862 6.25031 6.35872 6.60647 6.70471 6.83430 6.92066 6.96694 7.09373 7.41291 7.44986 7.60227 8.10143 8.14329 8.49074 8.97640 9.56029 11.06153 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.003369 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.611168 B = 8309.776390 C = 8498.494169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.155 3.845 10 N -0.538 5.538 11 C 0.062 3.938 12 C 0.062 3.938 13 N -0.537 5.537 14 C 0.060 3.940 15 C -0.110 4.110 16 C 0.076 3.924 17 H 0.066 0.934 18 C -0.151 4.151 19 C -0.156 4.156 20 C 0.043 3.957 21 O -0.368 6.368 22 C 0.057 3.943 23 C 0.063 3.937 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -19.768 -4.608 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.262 5.262 11 C -0.067 4.067 12 C -0.067 4.067 13 N -0.262 5.262 14 C -0.068 4.068 15 C -0.148 4.148 16 C 0.018 3.982 17 H 0.084 0.916 18 C -0.189 4.189 19 C -0.194 4.194 20 C -0.034 4.034 21 O -0.287 6.287 22 C -0.071 4.071 23 C -0.066 4.066 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.329 -19.551 -4.389 22.103 hybrid contribution 0.351 0.829 -0.259 0.937 sum 9.680 -18.722 -4.648 21.583 Atomic orbital electron populations 1.69934 1.06356 1.26909 1.50537 1.24976 0.94682 0.99160 0.94277 0.86802 0.80391 0.83654 0.78558 1.20246 1.21359 1.18929 1.21719 0.90660 0.94774 1.51674 0.90477 1.20144 0.94688 0.85733 0.96640 1.62611 1.58354 1.03734 1.01488 1.21959 0.99784 0.91053 0.93895 1.22181 0.97130 0.95716 0.91624 1.62101 1.59802 1.01350 1.02930 1.22024 0.95939 0.89552 0.99300 1.21671 1.02118 0.91814 0.99174 1.23042 0.97831 0.92148 0.85185 0.91614 1.22997 1.02249 0.95296 0.98390 1.22936 1.02404 0.97188 0.96848 1.23370 1.00428 0.85003 0.94559 1.89198 1.87331 1.16127 1.36046 1.22262 0.97767 0.94355 0.92680 1.21954 0.99403 0.91972 0.93296 0.92737 0.95558 0.95758 0.92845 0.91459 0.91181 0.94976 0.90533 0.95547 0.90512 0.90018 0.90634 0.90255 0.90687 0.90775 0.89267 0.92534 0.95048 0.91126 0.92570 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.63 27.37 -169.99 -4.65 16.98 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.29 6.69 56.52 0.38 -5.91 16 7 C -0.55 -15.52 8.21 -34.44 -0.28 -15.80 16 8 H 0.08 2.39 6.07 -52.49 -0.32 2.07 16 9 C 0.15 3.79 4.21 -4.98 -0.02 3.77 16 10 N -0.54 -11.58 4.92 -235.91 -1.16 -12.74 16 11 C 0.06 1.24 5.32 -3.77 -0.02 1.22 16 12 C 0.06 1.03 5.61 -3.77 -0.02 1.00 16 13 N -0.54 -8.75 4.71 -234.48 -1.10 -9.85 16 14 C 0.06 0.80 4.89 -3.83 -0.02 0.78 16 15 C -0.11 -1.29 4.77 -26.73 -0.13 -1.42 16 16 C 0.08 0.77 3.25 -25.95 -0.08 0.69 16 17 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 18 C -0.15 -1.25 6.63 -25.16 -0.17 -1.42 16 19 C -0.16 -1.13 7.09 -25.16 -0.18 -1.31 16 20 C 0.04 0.36 7.63 37.94 0.29 0.65 16 21 O -0.37 -4.35 11.13 -35.23 -0.39 -4.74 16 22 C 0.06 0.94 5.41 -3.77 -0.02 0.92 16 23 C 0.06 1.25 5.24 -3.77 -0.02 1.23 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.03 0.65 7.52 -51.92 -0.39 0.26 16 26 H 0.02 0.60 7.29 -51.93 -0.38 0.22 16 27 H 0.05 1.23 6.78 -51.93 -0.35 0.88 16 28 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 29 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.06 7.89 -51.93 -0.41 0.65 16 32 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.08 0.84 6.49 -51.93 -0.34 0.51 16 34 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 43 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -31.07 333.63 -10.19 -41.26 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.92 Total: -1.33 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.77 Total: -7.70 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -1.49 Total: -49.50 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.39 Total: -4.74 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.65 Total: 16.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.07 -10.19 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615793448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.591 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds