Wall clock time and date at job start Mon Mar 30 2020 01:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00016 * 2 1 4 4 H 1.48505 * 109.47424 * 270.00127 * 3 2 1 5 5 H 1.48501 * 109.47255 * 30.00400 * 3 2 1 6 6 H 1.48508 * 109.47107 * 150.00320 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99815 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00232 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47311 * 184.98550 * 9 7 2 11 11 C 1.46947 * 111.00212 * 295.19308 * 10 9 7 12 12 C 1.53053 * 109.36576 * 183.18608 * 11 10 9 13 13 N 1.46956 * 109.36372 * 301.60100 * 12 11 10 14 14 C 1.46901 * 111.00069 * 183.18829 * 13 12 11 15 15 C 1.52993 * 109.47246 * 169.99957 * 14 13 12 16 16 C 1.53000 * 109.47336 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.41992 * 307.31033 * 16 15 14 18 18 C 1.54481 * 110.37551 * 185.00075 * 16 15 14 19 19 C 1.54515 * 104.06311 * 217.19058 * 18 16 15 20 20 C 1.54486 * 104.06187 * 359.97438 * 19 18 16 21 21 O 1.44426 * 110.37122 * 69.61621 * 16 15 14 22 22 C 1.46947 * 110.88194 * 59.31849 * 13 12 11 23 23 C 1.46956 * 110.99686 * 58.99386 * 10 9 7 24 24 H 0.97005 * 120.00108 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47352 * 64.98781 * 9 7 2 26 26 H 1.09001 * 109.47455 * 304.98724 * 9 7 2 27 27 H 1.08997 * 109.48912 * 63.22013 * 11 10 9 28 28 H 1.09002 * 109.48993 * 303.15440 * 11 10 9 29 29 H 1.09000 * 109.49068 * 181.63087 * 12 11 10 30 30 H 1.08994 * 109.50484 * 61.57517 * 12 11 10 31 31 H 1.08999 * 109.47022 * 49.99652 * 14 13 12 32 32 H 1.08998 * 109.47059 * 289.99887 * 14 13 12 33 33 H 1.08999 * 109.47359 * 59.99901 * 15 14 13 34 34 H 1.09011 * 109.47315 * 300.00113 * 15 14 13 35 35 H 1.09001 * 110.51289 * 98.54098 * 18 16 15 36 36 H 1.09002 * 110.50653 * 335.82836 * 18 16 15 37 37 H 1.08991 * 110.51300 * 118.64164 * 19 18 16 38 38 H 1.08998 * 110.50559 * 241.21484 * 19 18 16 39 39 H 1.08993 * 110.36810 * 142.80940 * 20 19 18 40 40 H 1.08994 * 110.37473 * 265.04262 * 20 19 18 41 41 H 1.09005 * 109.48992 * 60.64895 * 22 13 12 42 42 H 1.09002 * 109.48993 * 180.71198 * 22 13 12 43 43 H 1.08999 * 109.48818 * 296.78073 * 23 10 9 44 44 H 1.09004 * 109.49113 * 56.84708 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5738 -0.1220 11 6 3.6265 -3.3705 1.0546 12 6 4.2215 -4.7749 0.9268 13 7 3.7302 -5.4017 -0.3082 14 6 4.2198 -6.7814 -0.4291 15 6 3.4970 -7.4798 -1.5826 16 6 4.0064 -8.9170 -1.7082 17 1 5.0942 -8.9304 -1.7757 18 6 3.3826 -9.6027 -2.9439 19 6 3.1431 -11.0585 -2.4846 20 6 3.6513 -11.0802 -1.0258 21 8 3.5627 -9.7077 -0.5840 22 6 4.1047 -4.6049 -1.4848 23 6 3.5098 -3.2006 -1.3570 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.7597 0.9302 26 1 3.8745 -0.6046 -0.8431 27 1 2.5405 -3.4399 1.1161 28 1 4.0123 -2.8927 1.9552 29 1 3.9208 -5.3766 1.7845 30 1 5.3088 -4.7078 0.8929 31 1 4.0260 -7.3184 0.4994 32 1 5.2919 -6.7706 -0.6256 33 1 3.6908 -6.9428 -2.5112 34 1 2.4248 -7.4906 -1.3862 35 1 4.0749 -9.5767 -3.7854 36 1 2.4390 -9.1260 -3.2095 37 1 2.0813 -11.3014 -2.5231 38 1 3.7153 -11.7522 -3.1006 39 1 3.0152 -11.7178 -0.4120 40 1 4.6839 -11.4271 -0.9888 41 1 5.1908 -4.5356 -1.5463 42 1 3.7190 -5.0828 -2.3853 43 1 2.4224 -3.2680 -1.3230 44 1 3.8105 -2.5989 -2.2148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615793448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:43 Heat of formation + Delta-G solvation = -63.665767 kcal Electronic energy + Delta-G solvation = -21010.137094 eV Core-core repulsion = 17961.079843 eV Total energy + Delta-G solvation = -3049.057251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56789 -39.99479 -37.07035 -34.63180 -33.38467 -32.79786 -31.77637 -30.28921 -28.20992 -26.30691 -24.52347 -23.88843 -22.98050 -22.03329 -21.74231 -20.67053 -18.87011 -17.44963 -17.21259 -16.68409 -16.56285 -16.10907 -15.98772 -15.79343 -15.62822 -15.20685 -14.63355 -14.55675 -14.23679 -14.01856 -13.69059 -13.56142 -12.92614 -12.84015 -12.77265 -12.60379 -12.39068 -12.23510 -12.12795 -12.11506 -11.85824 -11.81688 -11.69930 -11.49875 -11.44519 -11.20642 -10.78928 -10.67672 -9.26109 -9.00048 -8.31156 -6.36808 1.35600 1.37139 1.49628 2.34039 2.91965 3.01364 3.03531 3.31469 3.74200 3.79200 4.03224 4.05250 4.06789 4.14276 4.24488 4.37602 4.40845 4.47900 4.50416 4.52565 4.64480 4.67495 4.74371 4.81199 4.84964 4.89036 4.97014 4.99492 5.03154 5.09042 5.12510 5.14336 5.15954 5.19299 5.24500 5.32506 5.50866 5.99314 6.04228 6.12305 6.23178 6.36142 6.39715 6.70513 7.29917 8.85431 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.003369 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.611168 B = 8309.776390 C = 8498.494169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.550 4.550 8 H 0.031 0.969 9 C 0.161 3.839 10 N -0.532 5.532 11 C 0.063 3.937 12 C 0.071 3.929 13 N -0.558 5.558 14 C 0.066 3.934 15 C -0.105 4.105 16 C 0.076 3.924 17 H 0.078 0.922 18 C -0.151 4.151 19 C -0.153 4.153 20 C 0.036 3.964 21 O -0.399 6.399 22 C 0.069 3.931 23 C 0.063 3.937 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.011 0.989 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.013 0.987 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 -20.439 -5.413 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.588 4.588 8 H 0.049 0.951 9 C 0.033 3.967 10 N -0.255 5.255 11 C -0.066 4.066 12 C -0.057 4.057 13 N -0.284 5.284 14 C -0.061 4.061 15 C -0.143 4.143 16 C 0.018 3.982 17 H 0.096 0.904 18 C -0.189 4.189 19 C -0.190 4.190 20 C -0.040 4.040 21 O -0.319 6.319 22 C -0.059 4.059 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.032 0.968 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.024 -20.258 -5.197 24.124 hybrid contribution -0.557 0.932 0.012 1.086 sum 11.467 -19.326 -5.186 23.062 Atomic orbital electron populations 1.70094 1.08438 1.28176 1.52198 1.25968 0.95550 1.03549 0.93807 0.85627 0.79426 0.78067 0.79281 1.19009 1.21028 1.16944 1.21891 0.92762 0.93139 1.51055 0.95057 1.20024 0.91832 0.87932 0.96862 1.62661 1.57511 1.02771 1.02550 1.21981 0.97462 0.93405 0.93713 1.22063 0.97516 0.93515 0.92599 1.62070 1.60809 1.02778 1.02700 1.22012 0.96813 0.87519 0.99751 1.21619 1.00580 0.93227 0.98853 1.23074 0.98459 0.90987 0.85662 0.90429 1.23007 1.02157 0.95603 0.98133 1.22942 1.02721 0.96974 0.96383 1.23576 1.01518 0.83604 0.95328 1.89163 1.87681 1.17895 1.37208 1.22145 0.98222 0.91939 0.93582 1.21979 0.97027 0.94701 0.92841 0.92515 0.95265 0.95018 0.97012 0.90830 0.89781 0.93542 0.91154 0.94063 0.89572 0.92238 0.88837 0.91108 0.90800 0.88733 0.88691 0.91222 0.93605 0.89088 0.96832 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 2 C 0.01 0.53 5.47 84.66 0.46 1.00 16 3 Si 0.95 44.50 27.37 68.60 1.88 46.37 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.67 6.69 99.48 0.67 -10.01 16 7 C -0.55 -32.11 8.21 25.60 0.21 -31.90 16 8 H 0.03 2.07 6.07 -2.91 -0.02 2.06 16 9 C 0.16 7.86 4.21 85.56 0.36 8.22 16 10 N -0.53 -22.79 4.92 -900.30 -4.43 -27.22 16 11 C 0.06 2.57 5.32 86.31 0.46 3.02 16 12 C 0.07 2.29 5.61 86.31 0.48 2.78 16 13 N -0.56 -17.70 4.71 -895.75 -4.22 -21.92 16 14 C 0.07 1.67 4.89 86.30 0.42 2.09 16 15 C -0.11 -2.34 4.77 30.59 0.15 -2.19 16 16 C 0.08 1.41 3.25 31.10 0.10 1.51 16 17 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 18 C -0.15 -2.19 6.63 31.61 0.21 -1.98 16 19 C -0.15 -1.89 7.09 31.61 0.22 -1.66 16 20 C 0.04 0.54 7.63 72.49 0.55 1.09 16 21 O -0.40 -8.99 11.13 -148.98 -1.66 -10.65 16 22 C 0.07 2.15 5.41 86.31 0.47 2.62 16 23 C 0.06 2.56 5.24 86.31 0.45 3.01 16 24 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 25 H 0.03 1.41 7.52 -2.38 -0.02 1.40 16 26 H 0.03 1.51 7.29 -2.39 -0.02 1.49 16 27 H 0.01 0.56 6.78 -2.39 -0.02 0.55 16 28 H 0.07 2.83 8.12 -2.39 -0.02 2.81 16 29 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.87 7.89 -2.39 -0.02 1.85 16 32 H 0.04 0.93 8.12 -2.39 -0.02 0.92 16 33 H 0.09 1.72 6.49 -2.39 -0.02 1.71 16 34 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.14 7.87 -2.39 -0.02 1.12 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.09 2.46 6.34 -2.39 -0.02 2.44 16 43 H 0.01 0.65 6.62 -2.39 -0.02 0.64 16 44 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 Total: -1.00 -69.34 333.63 -2.67 -72.01 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.90 Total: 13.86 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.55 Total: -12.40 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -8.35 Total: -109.20 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.66 Total: -10.65 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.37 kcal Total: -69.34 -2.67 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615793448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.344 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds