Wall clock time and date at job start Mon Mar 30 2020 01:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48497 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47212 * 300.00310 * 3 2 1 6 6 H 1.48508 * 109.47086 * 60.00197 * 3 2 1 7 7 C 1.37880 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47423 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47373 * 305.49022 * 11 10 9 13 13 N 1.46902 * 109.47207 * 65.48410 * 11 10 9 14 14 C 1.50697 * 109.47275 * 185.48681 * 11 10 9 15 15 O 1.21286 * 120.00083 * 264.48576 * 14 11 10 16 16 N 1.34772 * 120.00295 * 84.49164 * 14 11 10 17 17 C 1.45351 * 120.36332 * 354.94265 * 16 14 11 18 18 C 1.53444 * 108.40884 * 136.67767 * 17 16 14 19 19 C 1.52880 * 109.40121 * 282.28360 * 18 17 16 20 20 C 1.53959 * 109.72522 * 72.89955 * 19 18 17 21 21 C 1.52438 * 110.70168 * 44.39157 * 20 19 18 22 22 C 1.53878 * 109.35759 * 246.22638 * 21 20 19 23 23 C 1.46969 * 120.36873 * 174.96553 * 16 14 11 24 24 H 0.97004 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46614 * 60.00631 * 9 7 2 26 26 H 1.08990 * 109.47623 * 300.00373 * 9 7 2 27 27 H 1.09004 * 109.46748 * 60.00321 * 10 9 7 28 28 H 1.09002 * 109.47602 * 300.00974 * 10 9 7 29 29 H 1.00903 * 110.99709 * 296.04921 * 13 11 10 30 30 H 1.00902 * 110.99878 * 59.99609 * 13 11 10 31 31 H 1.09003 * 109.67545 * 16.95131 * 17 16 14 32 32 H 1.08997 * 109.67477 * 256.41272 * 17 16 14 33 33 H 1.09004 * 109.48040 * 162.31102 * 18 17 16 34 34 H 1.09000 * 109.48256 * 42.26484 * 18 17 16 35 35 H 1.09005 * 109.42552 * 312.82290 * 19 18 17 36 36 H 1.08992 * 109.42999 * 192.98304 * 19 18 17 37 37 H 1.09008 * 109.21935 * 164.69259 * 20 19 18 38 38 H 1.09001 * 109.22669 * 284.08522 * 20 19 18 39 39 H 1.08996 * 109.48314 * 6.22700 * 21 20 19 40 40 H 1.09005 * 109.48278 * 126.26905 * 21 20 19 41 41 H 1.08995 * 109.54963 * 317.97287 * 22 21 20 42 42 H 1.08998 * 109.52189 * 197.76333 * 22 21 20 43 43 H 1.08992 * 109.52531 * 51.50138 * 23 16 14 44 44 H 1.08995 * 109.52976 * 171.72671 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 1 0.7823 -5.0041 0.8346 13 7 0.7372 -5.1229 -1.2624 14 6 2.4540 -6.1293 0.1321 15 8 2.8553 -6.7039 -0.8577 16 7 2.8787 -6.5126 1.3524 17 6 2.4899 -5.7621 2.5349 18 6 2.1041 -6.7586 3.6361 19 6 0.7024 -7.3030 3.3600 20 6 0.7495 -8.2810 2.1719 21 6 1.9393 -9.2256 2.2983 22 6 2.9378 -8.9430 1.1622 23 6 3.7405 -7.6936 1.5021 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 2.8725 -3.6048 0.8878 28 1 2.8713 -3.6040 -0.8922 29 1 0.0330 -4.4051 -1.3460 30 1 1.3625 -5.1099 -2.0542 31 1 1.6369 -5.1250 2.3012 32 1 3.3256 -5.1486 2.8713 33 1 2.1144 -6.2544 4.6025 34 1 2.8182 -7.5821 3.6477 35 1 0.0327 -6.4763 3.1229 36 1 0.3351 -7.8239 4.2442 37 1 -0.1712 -8.8642 2.1505 38 1 0.8374 -7.7151 1.2445 39 1 2.4276 -9.0685 3.2600 40 1 1.5934 -10.2571 2.2303 41 1 2.3950 -8.7849 0.2304 42 1 3.6136 -9.7911 1.0519 43 1 4.5913 -7.6119 0.8257 44 1 4.0959 -7.7574 2.5305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691604326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:01 Heat of formation + Delta-G solvation = -52.525098 kcal Electronic energy + Delta-G solvation = -22031.348003 eV Core-core repulsion = 18982.773848 eV Total energy + Delta-G solvation = -3048.574155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48857 -37.70376 -35.53892 -34.14950 -33.20870 -32.75849 -29.88678 -28.79130 -26.82675 -25.99405 -24.14704 -22.64576 -22.08583 -20.45962 -19.79540 -18.51868 -17.37429 -16.26087 -16.21124 -15.92709 -15.01318 -14.54454 -14.36689 -14.18746 -14.14334 -13.76872 -13.51732 -13.26017 -12.91722 -12.69278 -12.26642 -12.13336 -11.93533 -11.73693 -11.45641 -11.11060 -11.05432 -11.03532 -10.88706 -10.66417 -10.61845 -10.52576 -10.33781 -9.97557 -9.81164 -9.24366 -9.11947 -8.44467 -8.39674 -8.14376 -6.08772 -4.11651 2.98142 3.17306 3.25931 3.34068 3.38137 4.39364 4.54596 4.72159 4.82894 4.93188 4.94478 5.01131 5.13221 5.21283 5.27782 5.39498 5.42637 5.53115 5.54227 5.62279 5.70300 5.74770 5.79178 5.83918 5.91907 6.00467 6.06336 6.15954 6.23261 6.27253 6.30742 6.43497 6.54787 6.74053 6.88443 7.44537 7.52560 7.61431 7.69668 7.88600 7.92405 8.31537 8.51061 8.94553 9.53377 11.02177 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.004577 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.457927 B = 6116.729108 C = 6343.836724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.138 4.138 11 C 0.073 3.927 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.529 3.471 15 O -0.539 6.539 16 N -0.609 5.609 17 C 0.101 3.899 18 C -0.147 4.147 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.139 4.139 23 C 0.119 3.881 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.353 0.647 30 H 0.345 0.655 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 -16.006 7.874 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.042 4.042 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.415 6.415 16 N -0.344 5.344 17 C -0.022 4.022 18 C -0.185 4.185 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.177 4.177 23 C -0.004 4.004 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.304 -16.906 7.614 18.834 hybrid contribution 0.786 2.015 -0.066 2.164 sum 4.090 -14.892 7.547 17.189 Atomic orbital electron populations 1.69960 1.06016 1.26648 1.50593 1.25004 0.94848 0.99273 0.95134 0.86543 0.80135 0.83729 0.77658 1.19757 1.20941 1.20947 1.21219 0.93052 0.90881 1.50914 0.92692 1.19095 0.93688 0.91135 0.97281 1.22381 0.99894 0.93976 1.01506 1.21544 0.94844 0.92620 0.95212 0.88690 1.58781 1.18530 1.55782 1.03233 1.20772 0.81258 0.84074 0.82150 1.90615 1.57428 1.56434 1.37024 1.47796 1.51026 1.28914 1.06661 1.21741 1.01178 0.94026 0.85233 1.22318 0.98145 0.99639 0.98374 1.21734 0.96582 0.99062 0.98066 1.21749 0.97577 0.97337 0.99472 1.21797 0.96521 0.98809 0.98708 1.22078 0.98781 0.97169 0.99699 1.21400 0.93004 0.84538 1.01437 0.92950 0.96439 0.96410 0.92576 0.92702 0.83172 0.84164 0.88977 0.91616 0.90974 0.90161 0.91648 0.92325 0.92767 0.91182 0.91396 0.92574 0.90374 0.91556 0.91422 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.61 4.75 -27.88 -0.13 0.48 16 10 C -0.14 -2.75 4.66 -26.73 -0.12 -2.88 16 11 C 0.07 1.26 2.37 -68.87 -0.16 1.10 16 12 H 0.10 1.58 6.33 -51.93 -0.33 1.25 16 13 N -0.83 -14.58 8.98 -5.66 -0.05 -14.63 16 14 C 0.53 8.94 5.28 -10.99 -0.06 8.88 16 15 O -0.54 -10.61 15.24 5.55 0.08 -10.53 16 16 N -0.61 -8.21 1.68 -174.35 -0.29 -8.50 16 17 C 0.10 1.20 5.27 -4.43 -0.02 1.17 16 18 C -0.15 -1.38 5.45 -26.56 -0.14 -1.52 16 19 C -0.12 -1.16 5.75 -26.29 -0.15 -1.31 16 20 C -0.12 -1.37 5.40 -26.52 -0.14 -1.51 16 21 C -0.12 -1.18 5.50 -26.56 -0.15 -1.33 16 22 C -0.14 -1.56 5.56 -26.61 -0.15 -1.71 16 23 C 0.12 1.37 5.17 -4.12 -0.02 1.35 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.02 0.44 6.88 -51.93 -0.36 0.08 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.08 7.50 -51.93 -0.39 0.69 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.35 6.19 7.57 -39.29 -0.30 5.90 16 30 H 0.35 6.17 8.56 -39.29 -0.34 5.84 16 31 H 0.09 1.20 5.15 -51.93 -0.27 0.93 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.69 3.35 -51.93 -0.17 0.52 16 35 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.07 0.97 5.38 -51.93 -0.28 0.69 16 39 H 0.07 0.58 5.47 -51.93 -0.28 0.30 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.13 6.37 -51.93 -0.33 0.79 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 44 H 0.08 0.73 6.07 -51.93 -0.32 0.42 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -30.43 325.49 -8.41 -38.85 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.11 Total: 9.28 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.67 Total: -10.38 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.39 Total: -48.36 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.43 -8.41 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.677 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds