Wall clock time and date at job start Mon Mar 30 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48497 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47212 * 300.00310 * 3 2 1 6 6 H 1.48508 * 109.47086 * 60.00197 * 3 2 1 7 7 C 1.37880 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47423 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47373 * 305.49022 * 11 10 9 13 13 N 1.46902 * 109.47207 * 65.48410 * 11 10 9 14 14 C 1.50697 * 109.47275 * 185.48681 * 11 10 9 15 15 O 1.21286 * 120.00083 * 264.48576 * 14 11 10 16 16 N 1.34772 * 120.00295 * 84.49164 * 14 11 10 17 17 C 1.45351 * 120.36332 * 354.94265 * 16 14 11 18 18 C 1.53444 * 108.40884 * 136.67767 * 17 16 14 19 19 C 1.52880 * 109.40121 * 282.28360 * 18 17 16 20 20 C 1.53959 * 109.72522 * 72.89955 * 19 18 17 21 21 C 1.52438 * 110.70168 * 44.39157 * 20 19 18 22 22 C 1.53878 * 109.35759 * 246.22638 * 21 20 19 23 23 C 1.46969 * 120.36873 * 174.96553 * 16 14 11 24 24 H 0.97004 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46614 * 60.00631 * 9 7 2 26 26 H 1.08990 * 109.47623 * 300.00373 * 9 7 2 27 27 H 1.09004 * 109.46748 * 60.00321 * 10 9 7 28 28 H 1.09002 * 109.47602 * 300.00974 * 10 9 7 29 29 H 1.00903 * 110.99709 * 296.04921 * 13 11 10 30 30 H 1.00902 * 110.99878 * 59.99609 * 13 11 10 31 31 H 1.09003 * 109.67545 * 16.95131 * 17 16 14 32 32 H 1.08997 * 109.67477 * 256.41272 * 17 16 14 33 33 H 1.09004 * 109.48040 * 162.31102 * 18 17 16 34 34 H 1.09000 * 109.48256 * 42.26484 * 18 17 16 35 35 H 1.09005 * 109.42552 * 312.82290 * 19 18 17 36 36 H 1.08992 * 109.42999 * 192.98304 * 19 18 17 37 37 H 1.09008 * 109.21935 * 164.69259 * 20 19 18 38 38 H 1.09001 * 109.22669 * 284.08522 * 20 19 18 39 39 H 1.08996 * 109.48314 * 6.22700 * 21 20 19 40 40 H 1.09005 * 109.48278 * 126.26905 * 21 20 19 41 41 H 1.08995 * 109.54963 * 317.97287 * 22 21 20 42 42 H 1.08998 * 109.52189 * 197.76333 * 22 21 20 43 43 H 1.08992 * 109.52531 * 51.50138 * 23 16 14 44 44 H 1.08995 * 109.52976 * 171.72671 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 1 0.7823 -5.0041 0.8346 13 7 0.7372 -5.1229 -1.2624 14 6 2.4540 -6.1293 0.1321 15 8 2.8553 -6.7039 -0.8577 16 7 2.8787 -6.5126 1.3524 17 6 2.4899 -5.7621 2.5349 18 6 2.1041 -6.7586 3.6361 19 6 0.7024 -7.3030 3.3600 20 6 0.7495 -8.2810 2.1719 21 6 1.9393 -9.2256 2.2983 22 6 2.9378 -8.9430 1.1622 23 6 3.7405 -7.6936 1.5021 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 2.8725 -3.6048 0.8878 28 1 2.8713 -3.6040 -0.8922 29 1 0.0330 -4.4051 -1.3460 30 1 1.3625 -5.1099 -2.0542 31 1 1.6369 -5.1250 2.3012 32 1 3.3256 -5.1486 2.8713 33 1 2.1144 -6.2544 4.6025 34 1 2.8182 -7.5821 3.6477 35 1 0.0327 -6.4763 3.1229 36 1 0.3351 -7.8239 4.2442 37 1 -0.1712 -8.8642 2.1505 38 1 0.8374 -7.7151 1.2445 39 1 2.4276 -9.0685 3.2600 40 1 1.5934 -10.2571 2.2303 41 1 2.3950 -8.7849 0.2304 42 1 3.6136 -9.7911 1.0519 43 1 4.5913 -7.6119 0.8257 44 1 4.0959 -7.7574 2.5305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691604326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:00 Heat of formation + Delta-G solvation = -71.504560 kcal Electronic energy + Delta-G solvation = -22032.171014 eV Core-core repulsion = 18982.773848 eV Total energy + Delta-G solvation = -3049.397166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65797 -38.84324 -37.12615 -35.20275 -34.87250 -33.98003 -31.71524 -29.85882 -28.14823 -27.21489 -25.74490 -23.85197 -23.06165 -22.06946 -20.80046 -19.73060 -18.78126 -18.17914 -17.30522 -16.94709 -16.52236 -16.17115 -15.64210 -15.47839 -15.35765 -14.80102 -14.69526 -14.66766 -14.26855 -13.92737 -13.80883 -13.53877 -13.13766 -12.97782 -12.86819 -12.67529 -12.49595 -12.34289 -11.96948 -11.89569 -11.79969 -11.69049 -11.44078 -11.39656 -11.30542 -11.17076 -10.58419 -10.54622 -9.69774 -9.44573 -8.22180 -6.32697 1.38273 1.39922 1.51760 1.63529 2.04195 2.39575 3.11534 3.52249 3.71564 3.76364 3.95303 4.01927 4.06024 4.11048 4.17697 4.21526 4.28652 4.52112 4.56252 4.61756 4.67129 4.70451 4.83157 4.84129 4.87880 5.04240 5.05715 5.07338 5.16956 5.23825 5.28357 5.42149 5.43601 5.45080 5.58546 5.62908 5.73013 5.79056 6.04592 6.20158 6.42865 6.45954 6.82328 7.21961 7.36636 8.88863 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.004577 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.457927 B = 6116.729108 C = 6343.836724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.033 3.967 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.102 0.898 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.573 6.573 16 N -0.599 5.599 17 C 0.093 3.907 18 C -0.138 4.138 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.135 4.135 23 C 0.114 3.886 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.351 0.649 30 H 0.343 0.657 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -16.583 9.912 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.120 0.880 13 N -0.361 5.361 14 C 0.316 3.684 15 O -0.452 6.452 16 N -0.331 5.331 17 C -0.030 4.030 18 C -0.175 4.175 19 C -0.154 4.154 20 C -0.163 4.163 21 C -0.151 4.151 22 C -0.173 4.173 23 C -0.008 4.008 24 H 0.073 0.927 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.166 0.834 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.507 -17.498 9.689 20.503 hybrid contribution 0.379 2.166 -0.688 2.304 sum 4.886 -15.331 9.001 18.438 Atomic orbital electron populations 1.70069 1.07496 1.27722 1.51346 1.25846 0.95703 1.02913 0.94651 0.85492 0.79006 0.79259 0.77857 1.19039 1.20559 1.20117 1.21621 0.93284 0.92407 1.50897 0.92830 1.18938 0.93904 0.91954 0.95617 1.22118 0.98816 0.93881 1.01138 1.21444 0.94919 0.91807 0.95316 0.88002 1.58789 1.18447 1.55534 1.03349 1.20563 0.81112 0.83791 0.82964 1.90595 1.58666 1.57543 1.38387 1.47817 1.50134 1.29177 1.06013 1.21939 1.01014 0.94747 0.85281 1.22287 0.97827 0.99400 0.98003 1.21738 0.96915 0.98508 0.98203 1.21742 0.98440 0.97592 0.98500 1.21771 0.95540 0.98907 0.98930 1.22014 0.99062 0.97642 0.98607 1.21637 0.92261 0.83685 1.03185 0.92700 0.98102 0.97966 0.91813 0.94009 0.83389 0.84404 0.90568 0.90598 0.88934 0.88729 0.93040 0.90357 0.92758 0.94463 0.89221 0.91611 0.94085 0.89714 0.92627 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 2 C 0.01 0.41 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.65 4.75 29.85 0.14 1.79 16 10 C -0.12 -4.86 4.66 30.59 0.14 -4.72 16 11 C 0.08 2.85 2.37 44.17 0.10 2.95 16 12 H 0.10 3.48 6.33 -2.39 -0.02 3.47 16 13 N -0.83 -30.20 8.98 -171.81 -1.54 -31.74 16 14 C 0.53 18.06 5.28 87.66 0.46 18.52 16 15 O -0.57 -23.12 15.24 -3.05 -0.05 -23.17 16 16 N -0.60 -15.60 1.68 -823.91 -1.39 -16.99 16 17 C 0.09 2.03 5.27 86.74 0.46 2.49 16 18 C -0.14 -2.13 5.45 30.70 0.17 -1.97 16 19 C -0.12 -2.05 5.75 30.88 0.18 -1.87 16 20 C -0.12 -2.61 5.40 30.73 0.17 -2.45 16 21 C -0.11 -1.94 5.50 30.70 0.17 -1.77 16 22 C -0.13 -2.83 5.56 30.67 0.17 -2.66 16 23 C 0.11 2.42 5.17 86.07 0.45 2.87 16 24 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.00 0.04 6.88 -2.39 -0.02 0.02 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.06 2.46 7.50 -2.38 -0.02 2.44 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.35 12.87 7.57 -89.69 -0.68 12.19 16 30 H 0.34 12.76 8.56 -89.69 -0.77 12.00 16 31 H 0.08 1.93 5.15 -2.39 -0.01 1.92 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.21 3.35 -2.39 -0.01 1.20 16 35 H 0.05 1.05 7.87 -2.38 -0.02 1.04 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 38 H 0.04 1.03 5.38 -2.39 -0.01 1.02 16 39 H 0.09 1.15 5.47 -2.39 -0.01 1.13 16 40 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.04 1.19 6.37 -2.39 -0.02 1.17 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.34 8.04 -2.39 -0.02 1.32 16 44 H 0.12 1.65 6.07 -2.39 -0.01 1.64 16 Total: -1.00 -66.26 325.49 2.20 -64.06 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.44 Total: 32.30 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.30 Total: -15.83 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -2.64 Total: -102.82 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.26 2.20 -64.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.440 kcal (2) G-P(sol) polarization free energy of solvation -66.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds