Wall clock time and date at job start Mon Mar 30 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47355 * 269.99858 * 3 2 1 5 5 H 1.48500 * 109.47236 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.46771 * 150.00036 * 3 2 1 7 7 C 1.37874 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47122 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46986 * 54.82128 * 11 10 9 13 13 N 1.46899 * 109.47185 * 294.82028 * 11 10 9 14 14 C 1.50699 * 109.47092 * 174.81727 * 11 10 9 15 15 O 1.21286 * 119.99824 * 98.91312 * 14 11 10 16 16 N 1.34774 * 119.99990 * 278.90954 * 14 11 10 17 17 C 1.46974 * 120.36504 * 184.87033 * 16 14 11 18 18 C 1.52836 * 108.83575 * 68.61857 * 17 16 14 19 19 C 1.53805 * 109.24980 * 72.60464 * 18 17 16 20 20 C 1.52448 * 109.40233 * 282.12144 * 19 18 17 21 21 C 1.53961 * 110.72968 * 113.72999 * 20 19 18 22 22 C 1.52884 * 109.72985 * 315.63468 * 21 20 19 23 23 C 1.45328 * 120.36801 * 5.14661 * 16 14 11 24 24 H 0.97001 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47172 * 59.99678 * 9 7 2 26 26 H 1.09001 * 109.46811 * 299.99910 * 9 7 2 27 27 H 1.09000 * 109.47413 * 59.99790 * 10 9 7 28 28 H 1.09001 * 109.47199 * 299.99636 * 10 9 7 29 29 H 1.00902 * 111.00024 * 176.04605 * 13 11 10 30 30 H 1.00905 * 110.99865 * 299.99523 * 13 11 10 31 31 H 1.08995 * 109.53266 * 188.27215 * 17 16 14 32 32 H 1.09002 * 109.52553 * 308.49608 * 17 16 14 33 33 H 1.08996 * 109.50955 * 312.65177 * 18 17 16 34 34 H 1.08994 * 109.44286 * 192.51426 * 18 17 16 35 35 H 1.08996 * 109.48485 * 162.14324 * 19 18 17 36 36 H 1.08999 * 109.48665 * 42.10338 * 19 18 17 37 37 H 1.08994 * 109.22657 * 353.41159 * 20 19 18 38 38 H 1.08993 * 109.19174 * 234.02406 * 20 19 18 39 39 H 1.09001 * 109.42508 * 195.55732 * 21 20 19 40 40 H 1.08991 * 109.42876 * 75.70966 * 21 20 19 41 41 H 1.08995 * 109.48401 * 167.13071 * 22 21 20 42 42 H 1.09000 * 109.48608 * 47.07432 * 22 21 20 43 43 H 1.09000 * 109.67561 * 343.05308 * 23 16 14 44 44 H 1.09005 * 109.67312 * 103.59339 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 1 0.7863 -5.0063 -0.8378 13 7 0.7314 -5.1196 1.2593 14 6 2.4546 -6.1297 -0.1246 15 8 2.8039 -6.7414 0.8627 16 7 2.9378 -6.4718 -1.3354 17 6 3.8039 -7.6499 -1.4839 18 6 2.9736 -8.9078 -1.2310 19 6 2.0314 -9.1418 -2.4239 20 6 0.8422 -8.1932 -2.3236 21 6 0.8604 -7.1727 -3.4763 22 6 2.2774 -6.6295 -3.6623 23 6 2.6130 -5.6765 -2.5075 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8726 -3.6048 -0.8877 29 1 0.1671 -5.9560 1.2575 30 1 1.3531 -5.1046 2.0539 31 1 4.2090 -7.6792 -2.4953 32 1 4.6208 -7.5945 -0.7643 33 1 2.3857 -8.7793 -0.3222 34 1 3.6379 -9.7645 -1.1181 35 1 1.6765 -10.1723 -2.4102 36 1 2.5685 -8.9545 -3.3537 37 1 0.8862 -7.6617 -1.3731 38 1 -0.0813 -8.7702 -2.3699 39 1 0.1845 -6.3501 -3.2429 40 1 0.5349 -7.6587 -4.3960 41 1 2.3390 -6.0910 -4.6079 42 1 2.9863 -7.4575 -3.6682 43 1 1.7530 -5.0418 -2.2936 44 1 3.4681 -5.0575 -2.7794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691604328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:04 Heat of formation + Delta-G solvation = -51.702454 kcal Electronic energy + Delta-G solvation = -22049.675551 eV Core-core repulsion = 19001.137068 eV Total energy + Delta-G solvation = -3048.538483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.59563 -37.81901 -35.32965 -34.23843 -33.21661 -32.71481 -30.09033 -28.80719 -26.82554 -25.97966 -24.07536 -22.61313 -22.09277 -20.39605 -19.82482 -18.62999 -17.21002 -16.40275 -16.13300 -16.00509 -15.21835 -14.92251 -14.47427 -14.25124 -14.10885 -13.88614 -13.54216 -13.24905 -12.94809 -12.40337 -12.24712 -12.07238 -11.90605 -11.64998 -11.45854 -11.16277 -11.12858 -10.88316 -10.72340 -10.64370 -10.60091 -10.55994 -10.39375 -9.94113 -9.76279 -9.34499 -8.98667 -8.47101 -8.31411 -8.16064 -5.93015 -3.95085 2.82964 3.14728 3.34920 3.41605 3.45142 4.47799 4.50956 4.66034 4.75030 4.86789 4.87357 4.94604 4.99992 5.10001 5.30860 5.34944 5.42727 5.46503 5.47668 5.57241 5.64580 5.68380 5.77958 5.83653 5.87854 5.93458 5.99143 6.05701 6.15875 6.16944 6.32002 6.45432 6.63212 6.70375 7.09890 7.40927 7.59168 7.76741 7.82070 7.97120 8.14152 8.35774 8.49573 9.12857 9.68091 11.17881 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.004624 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.097403 B = 6053.362240 C = 6302.940652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.096 4.096 11 C 0.077 3.923 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.485 3.515 15 O -0.554 6.554 16 N -0.605 5.605 17 C 0.115 3.885 18 C -0.137 4.137 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.147 4.147 23 C 0.100 3.900 24 H 0.259 0.741 25 H 0.012 0.988 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.332 0.668 30 H 0.347 0.653 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -17.758 -8.118 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.039 4.039 12 H 0.115 0.885 13 N -0.335 5.335 14 C 0.273 3.727 15 O -0.432 6.432 16 N -0.339 5.339 17 C -0.008 4.008 18 C -0.175 4.175 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.185 4.185 23 C -0.023 4.023 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.563 -17.255 -7.780 19.260 hybrid contribution 1.042 0.053 -0.018 1.043 sum 4.604 -17.202 -7.798 19.440 Atomic orbital electron populations 1.69976 1.05942 1.26388 1.50894 1.24980 0.94785 0.99006 0.95484 0.86662 0.79914 0.83828 0.77979 1.20784 1.21263 1.19987 1.21278 0.92880 0.91324 1.50520 0.93027 1.19006 0.93527 0.89831 0.98124 1.21674 0.98880 0.92231 1.00685 1.21867 0.93668 0.93603 0.94755 0.88541 1.59026 1.26973 1.44155 1.03331 1.22610 0.82208 0.85731 0.82169 1.90627 1.60258 1.55432 1.36841 1.47950 1.49903 1.28027 1.08002 1.21538 0.92933 0.84689 1.01644 1.22122 0.98992 0.97250 0.99143 1.21788 0.96758 0.98862 0.98504 1.21727 0.97666 0.97055 0.99464 1.21745 0.96654 0.98847 0.98292 1.22318 0.98013 0.99868 0.98294 1.21771 1.02029 0.93475 0.84994 0.93118 0.96971 0.94701 0.92914 0.92816 0.85633 0.83877 0.90138 0.91391 0.90745 0.91549 0.92501 0.91256 0.91819 0.92683 0.91507 0.92196 0.90830 0.90222 0.88715 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 10 C -0.10 -1.97 4.57 -26.73 -0.12 -2.09 16 11 C 0.08 1.31 2.30 -68.87 -0.16 1.15 16 12 H 0.10 1.58 6.54 -51.93 -0.34 1.24 16 13 N -0.81 -13.91 8.46 -5.66 -0.05 -13.95 16 14 C 0.49 7.78 5.30 -10.99 -0.06 7.72 16 15 O -0.55 -10.26 15.21 5.55 0.08 -10.17 16 16 N -0.61 -7.84 1.67 -174.05 -0.29 -8.13 16 17 C 0.11 1.28 5.22 -3.87 -0.02 1.26 16 18 C -0.14 -1.44 5.57 -26.40 -0.15 -1.59 16 19 C -0.12 -1.11 5.49 -26.59 -0.15 -1.26 16 20 C -0.12 -1.24 5.40 -26.51 -0.14 -1.38 16 21 C -0.12 -1.11 5.75 -26.29 -0.15 -1.26 16 22 C -0.15 -1.33 5.45 -26.56 -0.14 -1.48 16 23 C 0.10 1.16 4.99 -4.44 -0.02 1.14 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.03 0.97 7.76 -51.93 -0.40 0.57 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.05 1.04 7.09 -51.93 -0.37 0.67 16 29 H 0.33 5.00 9.06 -39.29 -0.36 4.64 16 30 H 0.35 6.10 8.57 -39.29 -0.34 5.76 16 31 H 0.08 0.72 6.07 -51.93 -0.32 0.40 16 32 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.07 0.99 6.37 -51.93 -0.33 0.66 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.57 5.48 -51.93 -0.28 0.28 16 37 H 0.06 0.79 5.38 -51.93 -0.28 0.51 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.66 3.35 -51.93 -0.17 0.49 16 43 H 0.09 1.22 5.06 -51.93 -0.26 0.95 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -31.51 326.79 -8.47 -39.98 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.20 Total: 7.34 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.66 Total: -10.56 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.40 Total: -48.22 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.51 -8.47 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.720 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds