Wall clock time and date at job start Mon Mar 30 2020 01:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47355 * 269.99858 * 3 2 1 5 5 H 1.48500 * 109.47236 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.46771 * 150.00036 * 3 2 1 7 7 C 1.37874 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47122 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46986 * 54.82128 * 11 10 9 13 13 N 1.46899 * 109.47185 * 294.82028 * 11 10 9 14 14 C 1.50699 * 109.47092 * 174.81727 * 11 10 9 15 15 O 1.21286 * 119.99824 * 98.91312 * 14 11 10 16 16 N 1.34774 * 119.99990 * 278.90954 * 14 11 10 17 17 C 1.46974 * 120.36504 * 184.87033 * 16 14 11 18 18 C 1.52836 * 108.83575 * 68.61857 * 17 16 14 19 19 C 1.53805 * 109.24980 * 72.60464 * 18 17 16 20 20 C 1.52448 * 109.40233 * 282.12144 * 19 18 17 21 21 C 1.53961 * 110.72968 * 113.72999 * 20 19 18 22 22 C 1.52884 * 109.72985 * 315.63468 * 21 20 19 23 23 C 1.45328 * 120.36801 * 5.14661 * 16 14 11 24 24 H 0.97001 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47172 * 59.99678 * 9 7 2 26 26 H 1.09001 * 109.46811 * 299.99910 * 9 7 2 27 27 H 1.09000 * 109.47413 * 59.99790 * 10 9 7 28 28 H 1.09001 * 109.47199 * 299.99636 * 10 9 7 29 29 H 1.00902 * 111.00024 * 176.04605 * 13 11 10 30 30 H 1.00905 * 110.99865 * 299.99523 * 13 11 10 31 31 H 1.08995 * 109.53266 * 188.27215 * 17 16 14 32 32 H 1.09002 * 109.52553 * 308.49608 * 17 16 14 33 33 H 1.08996 * 109.50955 * 312.65177 * 18 17 16 34 34 H 1.08994 * 109.44286 * 192.51426 * 18 17 16 35 35 H 1.08996 * 109.48485 * 162.14324 * 19 18 17 36 36 H 1.08999 * 109.48665 * 42.10338 * 19 18 17 37 37 H 1.08994 * 109.22657 * 353.41159 * 20 19 18 38 38 H 1.08993 * 109.19174 * 234.02406 * 20 19 18 39 39 H 1.09001 * 109.42508 * 195.55732 * 21 20 19 40 40 H 1.08991 * 109.42876 * 75.70966 * 21 20 19 41 41 H 1.08995 * 109.48401 * 167.13071 * 22 21 20 42 42 H 1.09000 * 109.48608 * 47.07432 * 22 21 20 43 43 H 1.09000 * 109.67561 * 343.05308 * 23 16 14 44 44 H 1.09005 * 109.67312 * 103.59339 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 1 0.7863 -5.0063 -0.8378 13 7 0.7314 -5.1196 1.2593 14 6 2.4546 -6.1297 -0.1246 15 8 2.8039 -6.7414 0.8627 16 7 2.9378 -6.4718 -1.3354 17 6 3.8039 -7.6499 -1.4839 18 6 2.9736 -8.9078 -1.2310 19 6 2.0314 -9.1418 -2.4239 20 6 0.8422 -8.1932 -2.3236 21 6 0.8604 -7.1727 -3.4763 22 6 2.2774 -6.6295 -3.6623 23 6 2.6130 -5.6765 -2.5075 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8726 -3.6048 -0.8877 29 1 0.1671 -5.9560 1.2575 30 1 1.3531 -5.1046 2.0539 31 1 4.2090 -7.6792 -2.4953 32 1 4.6208 -7.5945 -0.7643 33 1 2.3857 -8.7793 -0.3222 34 1 3.6379 -9.7645 -1.1181 35 1 1.6765 -10.1723 -2.4102 36 1 2.5685 -8.9545 -3.3537 37 1 0.8862 -7.6617 -1.3731 38 1 -0.0813 -8.7702 -2.3699 39 1 0.1845 -6.3501 -3.2429 40 1 0.5349 -7.6587 -4.3960 41 1 2.3390 -6.0910 -4.6079 42 1 2.9863 -7.4575 -3.6682 43 1 1.7530 -5.0418 -2.2936 44 1 3.4681 -5.0575 -2.7794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691604328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:03 Heat of formation + Delta-G solvation = -71.776502 kcal Electronic energy + Delta-G solvation = -22050.546027 eV Core-core repulsion = 19001.137068 eV Total energy + Delta-G solvation = -3049.408959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73121 -38.89449 -36.90391 -35.23632 -34.85761 -33.96740 -31.94489 -29.82928 -28.14412 -27.23627 -25.60356 -23.82155 -23.06170 -22.01423 -20.83376 -19.78216 -18.57569 -18.13877 -17.44166 -17.12169 -16.48191 -16.46968 -15.92842 -15.46228 -15.19640 -14.92072 -14.71103 -14.32654 -14.20190 -13.97040 -13.81985 -13.47119 -13.15736 -12.83595 -12.78854 -12.61276 -12.43413 -12.17496 -11.98134 -11.93988 -11.74250 -11.61237 -11.48227 -11.42970 -11.29256 -11.09861 -10.91227 -10.48630 -9.62377 -9.49393 -8.13439 -6.23931 1.41871 1.43508 1.52898 1.55006 2.05875 2.44995 3.19591 3.48178 3.61463 3.76882 3.91076 3.98716 4.04424 4.08159 4.14871 4.24735 4.29268 4.48009 4.54818 4.63122 4.67550 4.74689 4.81496 4.85429 4.92265 5.01400 5.04894 5.13487 5.19549 5.22359 5.25968 5.38742 5.40105 5.54731 5.56675 5.67702 5.83150 5.97629 6.07721 6.30162 6.39032 6.47986 6.94046 7.12043 7.44311 8.97828 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.004624 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.097403 B = 6053.362240 C = 6302.940652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.042 3.958 10 C -0.081 4.081 11 C 0.085 3.915 12 H 0.103 0.897 13 N -0.818 5.818 14 C 0.488 3.512 15 O -0.582 6.582 16 N -0.595 5.595 17 C 0.110 3.890 18 C -0.133 4.133 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.138 4.138 23 C 0.092 3.908 24 H 0.262 0.738 25 H -0.006 1.006 26 H 0.004 0.996 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.344 0.656 30 H 0.344 0.656 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -18.403 -10.065 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.005 3.995 10 C -0.119 4.119 11 C -0.031 4.031 12 H 0.120 0.880 13 N -0.347 5.347 14 C 0.275 3.725 15 O -0.463 6.463 16 N -0.327 5.327 17 C -0.011 4.011 18 C -0.171 4.171 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.176 4.176 23 C -0.030 4.030 24 H 0.071 0.929 25 H 0.012 0.988 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.964 -17.919 -9.767 21.003 hybrid contribution 0.570 0.227 0.574 0.841 sum 5.534 -17.692 -9.192 20.691 Atomic orbital electron populations 1.70108 1.07643 1.27520 1.51706 1.25880 0.95666 1.02958 0.94898 0.85541 0.78589 0.78929 0.78537 1.19493 1.20944 1.19205 1.21705 0.93290 0.92684 1.50469 0.92717 1.18796 0.93757 0.91289 0.95640 1.21391 0.97757 0.92225 1.00564 1.21623 0.93866 0.92631 0.94938 0.87960 1.59003 1.27277 1.45097 1.03332 1.22162 0.82071 0.85311 0.82913 1.90613 1.61252 1.56354 1.38040 1.47950 1.48996 1.28348 1.07357 1.21758 0.92300 0.83974 1.03110 1.22063 0.99068 0.97508 0.98444 1.21761 0.95976 0.99075 0.98434 1.21731 0.98534 0.97351 0.98460 1.21749 0.96768 0.98314 0.98662 1.22284 0.97893 0.99737 0.97637 1.21944 1.01709 0.94081 0.85304 0.92916 0.98787 0.97782 0.94229 0.91561 0.84329 0.84220 0.86929 0.92721 0.93962 0.89875 0.91503 0.89379 0.94530 0.92455 0.92907 0.90376 0.89042 0.88804 0.90397 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.04 2.23 4.86 29.85 0.15 2.38 16 10 C -0.08 -3.38 4.57 30.59 0.14 -3.24 16 11 C 0.08 2.97 2.30 44.17 0.10 3.08 16 12 H 0.10 3.45 6.54 -2.39 -0.02 3.44 16 13 N -0.82 -29.28 8.46 -171.81 -1.45 -30.73 16 14 C 0.49 15.78 5.30 87.66 0.46 16.24 16 15 O -0.58 -21.95 15.21 -3.05 -0.05 -21.99 16 16 N -0.59 -14.81 1.67 -822.97 -1.38 -16.19 16 17 C 0.11 2.25 5.22 86.23 0.45 2.70 16 18 C -0.13 -2.58 5.57 30.81 0.17 -2.41 16 19 C -0.12 -1.79 5.49 30.68 0.17 -1.62 16 20 C -0.12 -2.32 5.40 30.74 0.17 -2.16 16 21 C -0.12 -1.95 5.75 30.88 0.18 -1.78 16 22 C -0.14 -2.08 5.45 30.71 0.17 -1.91 16 23 C 0.09 1.98 4.99 86.75 0.43 2.41 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.00 0.22 7.76 -2.39 -0.02 0.20 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.56 7.09 -2.39 -0.02 2.54 16 29 H 0.34 10.74 9.06 -89.69 -0.81 9.93 16 30 H 0.34 12.61 8.57 -89.69 -0.77 11.84 16 31 H 0.11 1.58 6.07 -2.39 -0.01 1.56 16 32 H 0.05 1.29 8.04 -2.39 -0.02 1.27 16 33 H 0.04 1.12 6.37 -2.39 -0.02 1.10 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.06 5.48 -2.39 -0.01 1.04 16 37 H 0.04 0.89 5.38 -2.39 -0.01 0.88 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.03 7.87 -2.39 -0.02 1.01 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.16 3.35 -2.39 -0.01 1.15 16 43 H 0.08 1.96 5.06 -2.39 -0.01 1.95 16 44 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -68.82 326.79 2.14 -66.68 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.57 Total: 28.70 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 3.28 Total: -16.45 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -2.54 Total: -103.46 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.82 2.14 -66.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.101 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds