Wall clock time and date at job start Mon Mar 30 2020 01:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47311 * 239.99322 * 2 1 3 5 5 C 1.53004 * 109.46624 * 65.00375 * 4 2 1 6 6 C 1.54270 * 110.48468 * 185.00074 * 5 4 2 7 7 C 1.53869 * 106.63967 * 217.73631 * 6 5 4 8 8 C 1.54268 * 106.60115 * 359.97438 * 7 6 5 9 9 C 1.54895 * 104.19476 * 23.60777 * 8 7 6 10 10 C 1.50703 * 109.46568 * 119.99732 * 2 1 3 11 11 O 1.20831 * 119.99975 * 120.00387 * 10 2 1 12 12 O 1.34225 * 120.00325 * 299.99859 * 10 2 1 13 13 C 1.45199 * 117.00224 * 180.02562 * 12 10 2 14 14 C 1.52999 * 109.47411 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47436 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47361 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00166 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99726 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00097 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47150 * 89.99367 * 20 18 16 22 22 H 1.48502 * 109.47373 * 209.99869 * 20 18 16 23 23 H 1.48500 * 109.47050 * 329.99909 * 20 18 16 24 24 H 1.08998 * 109.47101 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47189 * 300.00279 * 1 2 3 26 26 H 1.09000 * 109.46748 * 60.00136 * 1 2 3 27 27 H 1.09002 * 109.47155 * 305.00707 * 4 2 1 28 28 H 1.08997 * 109.47231 * 185.00049 * 4 2 1 29 29 H 1.08997 * 110.53944 * 307.61164 * 5 4 2 30 30 H 1.09002 * 110.03399 * 98.42629 * 6 5 4 31 31 H 1.08995 * 110.02943 * 337.04529 * 6 5 4 32 32 H 1.08999 * 110.03405 * 119.26051 * 7 6 5 33 33 H 1.08996 * 110.03529 * 240.68999 * 7 6 5 34 34 H 1.08997 * 110.48788 * 142.28685 * 8 7 6 35 35 H 1.09001 * 110.48482 * 264.93365 * 8 7 6 36 36 H 1.09001 * 110.75082 * 80.37254 * 9 8 7 37 37 H 1.08991 * 110.75596 * 203.55944 * 9 8 7 38 38 H 1.08997 * 109.47158 * 300.00072 * 13 12 10 39 39 H 1.09008 * 109.47247 * 59.99931 * 13 12 10 40 40 H 1.08997 * 109.47368 * 300.00371 * 14 13 12 41 41 H 1.09008 * 109.46622 * 59.99976 * 14 13 12 42 42 H 1.08997 * 109.47440 * 300.00688 * 15 14 13 43 43 H 1.09008 * 109.46940 * 60.00531 * 15 14 13 44 44 H 0.96998 * 119.99514 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6353 0.0688 -2.4953 6 6 2.0285 -0.7002 -3.7735 7 6 2.5038 0.3510 -4.7916 8 6 2.3825 1.7233 -4.0973 9 6 2.4392 1.3905 -2.5856 10 6 2.0322 -0.7104 1.2306 11 8 2.7269 -1.6928 1.1198 12 8 1.7079 -0.2518 2.4496 13 6 2.2274 -0.9856 3.5897 14 6 1.7563 -0.3184 4.8835 15 6 2.3032 -1.0920 6.0848 16 6 1.8397 -0.4345 7.3591 17 1 1.2170 0.4469 7.3163 18 6 2.2107 -0.9580 8.5795 19 7 1.8057 -0.3843 9.6915 20 14 3.2884 -2.4819 8.6534 21 1 4.7171 -2.0774 8.6721 22 1 2.9752 -3.2504 9.8849 23 1 3.0296 -3.3295 7.4618 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7199 -1.2950 28 1 3.1263 -0.7996 -1.2054 29 1 0.5648 0.2735 -2.4873 30 1 1.1652 -1.2372 -4.1667 31 1 2.8352 -1.3999 -3.5550 32 1 3.5414 0.1621 -5.0666 33 1 1.8712 0.3244 -5.6788 34 1 3.2158 2.3676 -4.3776 35 1 1.4327 2.1954 -4.3486 36 1 3.4689 1.2384 -2.2620 37 1 1.9635 2.1763 -1.9990 38 1 1.8640 -2.0127 3.5570 39 1 3.3170 -0.9846 3.5567 40 1 2.1201 0.7086 4.9160 41 1 0.6668 -0.3191 4.9167 42 1 1.9391 -2.1189 6.0521 43 1 3.3928 -1.0917 6.0518 44 1 2.0670 -0.7524 10.5501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734053654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:00 Heat of formation + Delta-G solvation = -152.557351 kcal Electronic energy + Delta-G solvation = -20179.914443 eV Core-core repulsion = 17094.709812 eV Total energy + Delta-G solvation = -3085.204630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67992 -39.45642 -37.88639 -35.95756 -35.54797 -33.85751 -30.62632 -29.52086 -29.35167 -26.74627 -25.45029 -23.93821 -22.10813 -21.64908 -20.91965 -20.33999 -19.03297 -18.55353 -17.75888 -17.33687 -16.70364 -16.28939 -15.96436 -15.65838 -15.24162 -14.82076 -14.64312 -14.19563 -14.15270 -13.95286 -13.75768 -13.64089 -13.02883 -12.86335 -12.62866 -12.43049 -12.22968 -12.12062 -12.03259 -11.99879 -11.82949 -11.77591 -11.69149 -11.44652 -11.39510 -11.38105 -11.34186 -11.23524 -11.09080 -10.78832 -8.31488 -6.36455 1.15712 1.35657 1.37168 1.48966 1.67142 2.34438 3.03458 3.51715 3.59092 3.79209 3.83821 3.96683 4.01615 4.02511 4.07887 4.31081 4.36624 4.50146 4.58832 4.61530 4.67963 4.71774 4.74121 4.80705 4.87124 4.93815 4.94322 4.95460 4.97472 5.14790 5.15653 5.23119 5.25597 5.32023 5.35742 5.41959 5.46714 5.52689 5.55184 5.60664 5.62160 6.24443 6.68634 6.72754 7.27962 8.85002 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.048744 B = 0.002688 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.287151 B =10415.743091 C =10627.314794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 H 0.126 0.874 4 C -0.091 4.091 5 C -0.087 4.087 6 C -0.123 4.123 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.127 4.127 10 C 0.456 3.544 11 O -0.543 6.543 12 O -0.358 6.358 13 C 0.073 3.927 14 C -0.091 4.091 15 C -0.009 4.009 16 C -0.534 4.534 17 H 0.036 0.964 18 C 0.005 3.995 19 N -0.949 5.949 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.247 1.247 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 1.727 -30.707 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 H 0.143 0.857 4 C -0.129 4.129 5 C -0.105 4.105 6 C -0.161 4.161 7 C -0.164 4.164 8 C -0.162 4.162 9 C -0.164 4.164 10 C 0.301 3.699 11 O -0.434 6.434 12 O -0.275 6.275 13 C 0.000 4.000 14 C -0.129 4.129 15 C -0.047 4.047 16 C -0.572 4.572 17 H 0.054 0.946 18 C -0.192 4.192 19 N -0.589 5.589 20 Si 0.773 3.227 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.171 1.171 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.350 1.415 -30.521 30.556 hybrid contribution 0.603 -0.708 0.933 1.317 sum 0.254 0.707 -29.588 29.598 Atomic orbital electron populations 1.21849 0.90621 1.03090 1.04512 1.21233 0.99376 1.01325 0.87620 0.85673 1.21499 1.00847 0.98761 0.91763 1.22068 1.01019 0.94813 0.92642 1.22206 1.01040 0.97976 0.94869 1.22142 1.01182 0.94725 0.98302 1.22358 1.02147 0.96876 0.94807 1.22670 1.00026 0.96903 0.96833 1.24696 0.76686 0.82746 0.85772 1.90631 1.37331 1.27618 1.87777 1.86500 1.69618 1.55918 1.15445 1.23156 0.98792 0.95320 0.82758 1.21310 1.01209 0.99805 0.90581 1.19450 0.96536 0.96189 0.92520 1.21391 1.31872 1.12827 0.91077 0.94568 1.26008 0.97416 1.00709 0.95102 1.70060 1.47596 1.42853 0.98386 0.85661 0.79187 0.79390 0.78453 1.19074 1.20802 1.17079 0.92562 0.91535 0.88218 0.91895 0.92291 0.88867 0.91261 0.92539 0.92223 0.91293 0.91593 0.90938 0.92185 0.90570 0.91444 0.91371 0.91818 0.91820 0.95720 0.95837 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.90 71.98 0.64 -1.52 16 2 C -0.08 -1.42 2.77 -11.54 -0.03 -1.45 16 3 H 0.13 1.91 7.35 -2.39 -0.02 1.89 16 4 C -0.09 -1.56 3.38 30.60 0.10 -1.46 16 5 C -0.09 -1.06 2.73 -9.69 -0.03 -1.09 16 6 C -0.12 -1.50 6.37 31.32 0.20 -1.30 16 7 C -0.13 -1.36 6.80 31.32 0.21 -1.14 16 8 C -0.12 -1.28 6.83 31.67 0.22 -1.06 16 9 C -0.13 -1.48 5.65 31.91 0.18 -1.30 16 10 C 0.46 12.88 7.26 71.24 0.52 13.40 16 11 O -0.54 -18.50 15.67 21.95 0.34 -18.16 16 12 O -0.36 -11.22 10.12 -51.37 -0.52 -11.74 16 13 C 0.07 2.52 5.47 71.98 0.39 2.91 16 14 C -0.09 -3.62 5.53 30.59 0.17 -3.45 16 15 C -0.01 -0.45 4.04 29.84 0.12 -0.32 16 16 C -0.53 -30.95 9.66 25.60 0.25 -30.71 16 17 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 18 C 0.00 0.28 5.47 84.65 0.46 0.74 16 19 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 20 Si 0.95 44.41 27.47 68.60 1.88 46.30 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 26 H 0.10 0.96 6.43 -2.39 -0.02 0.95 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.19 7.83 -2.39 -0.02 1.17 16 29 H 0.09 0.92 6.32 -2.39 -0.02 0.91 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.79 7.84 -2.39 -0.02 0.77 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.81 7.97 -2.39 -0.02 0.79 16 37 H 0.08 0.77 7.95 -2.39 -0.02 0.75 16 38 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 39 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 43 H 0.02 1.06 7.57 -2.38 -0.02 1.04 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -68.07 349.25 6.29 -61.78 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.88 Total: 8.96 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.41 Total: -27.75 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.30 Total: -59.38 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.18 Total: -29.90 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -68.07 6.29 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734053654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.781 kcal (2) G-P(sol) polarization free energy of solvation -68.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds