Wall clock time and date at job start Mon Mar 30 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 C 1.53004 * 109.47178 * 119.99751 * 2 1 3 5 5 H 1.08995 * 109.47095 * 294.07846 * 4 2 1 6 6 C 1.53001 * 109.46845 * 54.07604 * 4 2 1 7 7 C 1.52994 * 109.46844 * 186.56740 * 6 4 2 8 8 C 1.53007 * 109.46914 * 186.58603 * 7 6 4 9 9 C 1.53000 * 109.46832 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47696 * 59.99957 * 9 8 7 11 11 C 1.53007 * 109.46642 * 299.99966 * 10 9 8 12 12 C 1.53001 * 109.47072 * 66.58905 * 7 6 4 13 13 C 1.50701 * 109.47060 * 174.07406 * 4 2 1 14 14 O 1.21204 * 120.00044 * 240.00076 * 13 4 2 15 15 O 1.34318 * 119.99730 * 60.00010 * 13 4 2 16 16 C 1.34918 * 116.99750 * 179.97438 * 15 13 4 17 17 H 1.07995 * 120.00228 * 0.02562 * 16 15 13 18 18 C 1.38762 * 119.99990 * 180.02562 * 16 15 13 19 19 N 1.31441 * 119.99427 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47164 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46929 * 119.99928 * 20 18 16 23 23 H 1.48495 * 109.47339 * 239.99955 * 20 18 16 24 24 H 1.08999 * 109.47102 * 293.37982 * 1 2 3 25 25 H 1.09000 * 109.46831 * 53.37915 * 1 2 3 26 26 H 1.09003 * 109.46739 * 173.37540 * 1 2 3 27 27 H 1.09000 * 109.47333 * 240.00439 * 2 1 3 28 28 H 1.08997 * 109.47511 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47390 * 300.00025 * 3 2 1 30 30 H 1.09004 * 109.47231 * 60.00064 * 3 2 1 31 31 H 1.08997 * 109.46776 * 66.56750 * 6 4 2 32 32 H 1.09002 * 109.47111 * 306.56927 * 6 4 2 33 33 H 1.08997 * 109.47309 * 306.58497 * 7 6 4 34 34 H 1.09000 * 109.47186 * 60.00128 * 8 7 6 35 35 H 1.09001 * 109.46958 * 299.99549 * 8 7 6 36 36 H 1.08998 * 109.46808 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.47357 * 299.99675 * 9 8 7 38 38 H 1.09005 * 109.46948 * 59.99467 * 10 9 8 39 39 H 1.08997 * 109.47512 * 179.97438 * 10 9 8 40 40 H 1.08997 * 109.47203 * 299.99678 * 11 10 9 41 41 H 1.09000 * 109.46814 * 179.97438 * 11 10 9 42 42 H 1.08998 * 109.46924 * 299.99564 * 12 7 6 43 43 H 1.08997 * 109.47386 * 59.99640 * 12 7 6 44 44 H 0.97002 * 119.99452 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.7659 -0.1498 2.1361 6 6 1.4121 -2.1143 1.3260 7 6 1.7914 -2.7722 2.6541 8 6 1.3033 -4.2223 2.6626 9 6 1.6821 -4.8801 3.9911 10 6 1.0284 -4.1152 5.1437 11 6 1.5165 -2.6651 5.1351 12 6 1.1381 -2.0075 3.8070 13 6 3.5399 -0.8495 1.1781 14 8 4.0555 -1.9464 1.1878 15 8 4.3053 0.2518 1.1039 16 6 5.6404 0.0668 1.0434 17 1 6.0481 -0.9332 1.0554 18 6 6.4897 1.1614 0.9658 19 7 5.9934 2.3784 0.9518 20 14 8.3381 0.9052 0.8813 21 1 8.6382 -0.5488 0.9121 22 1 8.8620 1.4917 -0.3785 23 1 8.9834 1.5691 2.0423 24 1 -0.3633 0.4078 0.9433 25 1 -0.3633 0.6130 -0.8248 26 1 -0.3633 -1.0209 -0.1186 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.7791 -2.7241 0.5005 32 1 0.3275 -2.0281 1.2598 33 1 2.8747 -2.7528 2.7729 34 1 1.7688 -4.7672 1.8413 35 1 0.2200 -4.2417 2.5439 36 1 1.3340 -5.9130 3.9973 37 1 2.7655 -4.8607 4.1103 38 1 -0.0549 -4.1346 5.0245 39 1 1.2979 -4.5841 6.0901 40 1 2.5998 -2.6457 5.2543 41 1 1.0505 -2.1200 5.9560 42 1 1.4858 -0.9744 3.8010 43 1 0.0548 -2.0269 3.6882 44 1 6.5871 3.1436 0.8971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734613521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:29 Heat of formation + Delta-G solvation = -130.766705 kcal Electronic energy + Delta-G solvation = -22001.583816 eV Core-core repulsion = 18917.324099 eV Total energy + Delta-G solvation = -3084.259717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.68119 -38.20592 -36.14286 -34.95018 -32.26967 -31.98106 -30.56832 -28.31709 -27.00933 -25.32915 -23.91049 -22.39903 -21.12362 -20.43747 -19.42914 -18.90776 -17.66666 -16.69253 -15.44330 -14.92268 -14.54017 -14.29497 -14.09968 -13.96093 -13.93749 -13.54509 -13.27644 -12.77159 -12.37835 -12.15669 -11.90381 -11.83967 -11.75828 -11.67666 -11.50150 -11.21651 -10.94179 -10.87430 -10.69670 -10.59381 -10.42223 -10.33319 -10.27685 -10.16513 -9.86259 -9.68658 -9.65095 -9.47344 -8.74346 -8.50410 -6.35375 -4.01783 3.13411 3.22256 3.29212 3.62678 4.00659 4.64307 4.83447 4.92445 4.95201 5.13620 5.21863 5.31714 5.41540 5.43449 5.54596 5.65092 5.68402 5.72571 5.73992 5.83461 5.85504 5.92393 6.01761 6.08529 6.16534 6.17149 6.21064 6.28830 6.32153 6.37752 6.41630 6.45134 6.48290 6.56029 6.61271 6.71500 6.79533 6.88767 6.99974 7.39472 7.50688 8.04133 8.82484 9.15055 9.96678 10.82767 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017424 B = 0.005982 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.611964 B = 4679.915645 C = 5686.952113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.159 4.159 4 C -0.069 4.069 5 H 0.093 0.907 6 C -0.095 4.095 7 C -0.095 4.095 8 C -0.108 4.108 9 C -0.120 4.120 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.116 4.116 13 C 0.404 3.596 14 O -0.553 6.553 15 O -0.210 6.210 16 C -0.381 4.381 17 H 0.093 0.907 18 C 0.042 3.958 19 N -0.866 5.866 20 Si 0.937 3.063 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 -7.055 3.473 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.215 4.215 4 C -0.088 4.088 5 H 0.111 0.889 6 C -0.132 4.132 7 C -0.113 4.113 8 C -0.146 4.146 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.158 4.158 12 C -0.153 4.153 13 C 0.251 3.749 14 O -0.450 6.450 15 O -0.117 6.117 16 C -0.458 4.458 17 H 0.111 0.889 18 C -0.161 4.161 19 N -0.503 5.503 20 Si 0.762 3.238 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.334 -7.101 3.463 13.816 hybrid contribution 0.938 -0.018 -0.023 0.939 sum -10.395 -7.119 3.440 13.060 Atomic orbital electron populations 1.21907 0.95440 1.01216 1.01559 1.21013 0.95059 0.97384 0.96858 1.22069 1.05400 0.93837 1.00239 1.21012 0.89827 0.97875 1.00074 0.88942 1.21523 0.99237 0.94307 0.98154 1.21308 1.02534 0.93732 0.93748 1.21510 1.00095 0.96021 0.96938 1.21528 1.00882 0.98251 0.95045 1.21514 0.99977 0.95861 0.98025 1.21521 1.01330 0.95479 0.97430 1.21640 0.99871 0.99399 0.94391 1.23208 0.90021 0.83745 0.77951 1.90511 1.75371 1.28307 1.50776 1.83923 1.19446 1.33005 1.75359 1.21250 0.77954 0.94876 1.51708 0.88937 1.25255 1.00098 0.94293 0.96485 1.69988 1.35545 0.97698 1.47101 0.85700 0.81198 0.78857 0.78031 1.19099 1.20299 1.20310 0.92738 0.92879 0.92719 0.91414 0.88309 0.93835 0.93258 0.91415 0.91473 0.88946 0.92152 0.92738 0.92651 0.91934 0.92417 0.92643 0.91931 0.92517 0.91917 0.92536 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.45 37.16 0.31 -1.55 16 2 C -0.08 -1.42 2.50 -90.62 -0.23 -1.65 16 3 C -0.16 -2.96 8.86 37.16 0.33 -2.63 16 4 C -0.07 -1.26 1.81 -91.77 -0.17 -1.42 16 5 H 0.09 1.64 6.35 -51.93 -0.33 1.31 16 6 C -0.09 -1.50 3.48 -26.73 -0.09 -1.59 16 7 C -0.09 -1.48 1.98 -90.62 -0.18 -1.66 16 8 C -0.11 -1.44 5.20 -26.73 -0.14 -1.58 16 9 C -0.12 -1.47 5.92 -26.73 -0.16 -1.62 16 10 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 11 C -0.12 -1.53 5.92 -26.75 -0.16 -1.69 16 12 C -0.12 -1.60 4.99 -26.75 -0.13 -1.73 16 13 C 0.40 9.78 6.85 36.01 0.25 10.03 16 14 O -0.55 -14.45 13.34 -19.05 -0.25 -14.71 16 15 O -0.21 -5.83 6.94 -20.72 -0.14 -5.97 16 16 C -0.38 -11.17 9.65 30.93 0.30 -10.87 16 17 H 0.09 2.77 6.86 -52.49 -0.36 2.41 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 19 N -0.87 -25.01 13.67 55.48 0.76 -24.26 16 20 Si 0.94 21.44 29.55 -169.99 -5.02 16.42 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.64 6.60 -51.93 -0.34 0.30 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.10 2.32 5.49 -51.93 -0.29 2.04 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.16 7.90 -51.93 -0.41 0.75 16 32 H 0.07 0.89 6.11 -51.93 -0.32 0.57 16 33 H 0.09 1.80 6.01 -51.93 -0.31 1.49 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.94 6.49 -51.93 -0.34 0.60 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -30.60 335.92 -7.67 -38.27 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.75 Total: 3.56 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.32 Total: -18.37 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.76 Total: -24.26 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.40 Total: -20.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.60 -7.67 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734613521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.495 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds