Wall clock time and date at job start Mon Mar 30 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 C 1.53004 * 109.47178 * 119.99751 * 2 1 3 5 5 H 1.08995 * 109.47095 * 294.07846 * 4 2 1 6 6 C 1.53001 * 109.46845 * 54.07604 * 4 2 1 7 7 C 1.52994 * 109.46844 * 186.56740 * 6 4 2 8 8 C 1.53007 * 109.46914 * 186.58603 * 7 6 4 9 9 C 1.53000 * 109.46832 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47696 * 59.99957 * 9 8 7 11 11 C 1.53007 * 109.46642 * 299.99966 * 10 9 8 12 12 C 1.53001 * 109.47072 * 66.58905 * 7 6 4 13 13 C 1.50701 * 109.47060 * 174.07406 * 4 2 1 14 14 O 1.21204 * 120.00044 * 240.00076 * 13 4 2 15 15 O 1.34318 * 119.99730 * 60.00010 * 13 4 2 16 16 C 1.34918 * 116.99750 * 179.97438 * 15 13 4 17 17 H 1.07995 * 120.00228 * 0.02562 * 16 15 13 18 18 C 1.38762 * 119.99990 * 180.02562 * 16 15 13 19 19 N 1.31441 * 119.99427 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47164 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46929 * 119.99928 * 20 18 16 23 23 H 1.48495 * 109.47339 * 239.99955 * 20 18 16 24 24 H 1.08999 * 109.47102 * 293.37982 * 1 2 3 25 25 H 1.09000 * 109.46831 * 53.37915 * 1 2 3 26 26 H 1.09003 * 109.46739 * 173.37540 * 1 2 3 27 27 H 1.09000 * 109.47333 * 240.00439 * 2 1 3 28 28 H 1.08997 * 109.47511 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47390 * 300.00025 * 3 2 1 30 30 H 1.09004 * 109.47231 * 60.00064 * 3 2 1 31 31 H 1.08997 * 109.46776 * 66.56750 * 6 4 2 32 32 H 1.09002 * 109.47111 * 306.56927 * 6 4 2 33 33 H 1.08997 * 109.47309 * 306.58497 * 7 6 4 34 34 H 1.09000 * 109.47186 * 60.00128 * 8 7 6 35 35 H 1.09001 * 109.46958 * 299.99549 * 8 7 6 36 36 H 1.08998 * 109.46808 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.47357 * 299.99675 * 9 8 7 38 38 H 1.09005 * 109.46948 * 59.99467 * 10 9 8 39 39 H 1.08997 * 109.47512 * 179.97438 * 10 9 8 40 40 H 1.08997 * 109.47203 * 299.99678 * 11 10 9 41 41 H 1.09000 * 109.46814 * 179.97438 * 11 10 9 42 42 H 1.08998 * 109.46924 * 299.99564 * 12 7 6 43 43 H 1.08997 * 109.47386 * 59.99640 * 12 7 6 44 44 H 0.97002 * 119.99452 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.7659 -0.1498 2.1361 6 6 1.4121 -2.1143 1.3260 7 6 1.7914 -2.7722 2.6541 8 6 1.3033 -4.2223 2.6626 9 6 1.6821 -4.8801 3.9911 10 6 1.0284 -4.1152 5.1437 11 6 1.5165 -2.6651 5.1351 12 6 1.1381 -2.0075 3.8070 13 6 3.5399 -0.8495 1.1781 14 8 4.0555 -1.9464 1.1878 15 8 4.3053 0.2518 1.1039 16 6 5.6404 0.0668 1.0434 17 1 6.0481 -0.9332 1.0554 18 6 6.4897 1.1614 0.9658 19 7 5.9934 2.3784 0.9518 20 14 8.3381 0.9052 0.8813 21 1 8.6382 -0.5488 0.9121 22 1 8.8620 1.4917 -0.3785 23 1 8.9834 1.5691 2.0423 24 1 -0.3633 0.4078 0.9433 25 1 -0.3633 0.6130 -0.8248 26 1 -0.3633 -1.0209 -0.1186 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.7791 -2.7241 0.5005 32 1 0.3275 -2.0281 1.2598 33 1 2.8747 -2.7528 2.7729 34 1 1.7688 -4.7672 1.8413 35 1 0.2200 -4.2417 2.5439 36 1 1.3340 -5.9130 3.9973 37 1 2.7655 -4.8607 4.1103 38 1 -0.0549 -4.1346 5.0245 39 1 1.2979 -4.5841 6.0901 40 1 2.5998 -2.6457 5.2543 41 1 1.0505 -2.1200 5.9560 42 1 1.4858 -0.9744 3.8010 43 1 0.0548 -2.0269 3.6882 44 1 6.5871 3.1436 0.8971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734613521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:29 Heat of formation + Delta-G solvation = -146.445614 kcal Electronic energy + Delta-G solvation = -22002.263705 eV Core-core repulsion = 18917.324099 eV Total energy + Delta-G solvation = -3084.939606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42857 -39.58787 -37.64588 -36.89262 -34.24764 -33.39978 -31.61243 -29.68890 -28.38998 -27.25629 -25.35368 -23.47357 -22.66672 -21.69923 -20.60974 -20.47371 -19.82273 -18.54848 -16.92292 -16.71320 -16.24148 -16.03215 -15.32626 -15.28084 -15.05447 -14.77682 -14.60775 -14.52812 -13.77502 -13.63696 -13.34519 -13.14925 -13.08510 -12.95568 -12.95285 -12.77686 -12.41895 -12.21999 -12.17708 -12.03866 -11.96519 -11.81463 -11.55831 -11.51942 -11.46445 -11.23926 -10.80825 -10.73341 -10.66473 -10.60422 -8.50542 -6.28074 1.29970 1.31957 1.49044 1.71174 2.12877 2.85436 3.00086 3.62343 3.80879 3.87489 4.02039 4.03136 4.10316 4.31495 4.41650 4.47388 4.55474 4.57749 4.67063 4.69068 4.69685 4.77637 4.84878 4.86504 4.89297 4.98220 5.06529 5.11573 5.15080 5.16386 5.21035 5.24049 5.28359 5.30820 5.38856 5.44062 5.47024 5.49752 5.59167 5.70931 5.76595 5.91204 6.77610 6.96073 7.87593 8.69783 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017424 B = 0.005982 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.611964 B = 4679.915645 C = 5686.952113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.154 4.154 4 C -0.061 4.061 5 H 0.101 0.899 6 C -0.088 4.088 7 C -0.096 4.096 8 C -0.104 4.104 9 C -0.121 4.121 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.398 3.602 14 O -0.579 6.579 15 O -0.231 6.231 16 C -0.420 4.420 17 H 0.073 0.927 18 C -0.001 4.001 19 N -0.897 5.897 20 Si 1.008 2.992 21 H -0.269 1.269 22 H -0.260 1.260 23 H -0.261 1.261 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.910 -7.475 3.848 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.211 4.211 4 C -0.080 4.080 5 H 0.119 0.881 6 C -0.125 4.125 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.158 4.158 10 C -0.148 4.148 11 C -0.160 4.160 12 C -0.150 4.150 13 C 0.246 3.754 14 O -0.477 6.477 15 O -0.140 6.140 16 C -0.496 4.496 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.535 5.535 20 Si 0.828 3.172 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.185 1.185 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.707 -7.520 3.839 16.098 hybrid contribution 1.648 0.095 -0.142 1.657 sum -12.059 -7.425 3.696 14.636 Atomic orbital electron populations 1.21850 0.91265 1.03013 1.03061 1.21019 0.98317 0.95443 0.95188 1.21974 1.01885 0.95749 1.01509 1.21198 0.85206 1.00212 1.01369 0.88066 1.21559 1.01206 0.92072 0.97650 1.21237 0.99662 0.95969 0.94564 1.21482 1.01503 0.94032 0.97152 1.21545 0.99594 0.99647 0.95041 1.21494 1.00962 0.94303 0.98030 1.21545 0.99869 0.97079 0.97507 1.21621 1.01290 0.98033 0.94044 1.24572 0.92386 0.82704 0.75769 1.90485 1.76561 1.29157 1.51452 1.83997 1.19062 1.34505 1.76401 1.21357 0.79303 0.94673 1.54279 0.90953 1.26349 1.05070 0.93615 0.95091 1.70072 1.37712 0.98557 1.47165 0.84696 0.74564 0.78725 0.79193 1.19376 1.18465 1.18525 0.91338 0.91339 0.90765 0.92780 0.93596 0.91844 0.92669 0.93137 0.87312 0.94121 0.93446 0.89941 0.90545 0.94423 0.90290 0.91478 0.94674 0.90781 0.93707 0.89546 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.45 71.98 0.61 -2.39 16 2 C -0.08 -2.66 2.50 -10.79 -0.03 -2.69 16 3 C -0.15 -5.80 8.86 71.98 0.64 -5.16 16 4 C -0.06 -2.25 1.81 -11.54 -0.02 -2.27 16 5 H 0.10 3.58 6.35 -2.39 -0.02 3.57 16 6 C -0.09 -2.68 3.48 30.59 0.11 -2.57 16 7 C -0.10 -2.97 1.98 -10.79 -0.02 -2.99 16 8 C -0.10 -2.63 5.20 30.60 0.16 -2.47 16 9 C -0.12 -2.80 5.92 30.59 0.18 -2.62 16 10 C -0.11 -2.23 5.92 30.60 0.18 -2.05 16 11 C -0.12 -2.99 5.92 30.58 0.18 -2.81 16 12 C -0.11 -2.94 4.99 30.58 0.15 -2.79 16 13 C 0.40 20.38 6.85 71.24 0.49 20.86 16 14 O -0.58 -32.38 13.34 20.79 0.28 -32.10 16 15 O -0.23 -13.67 6.94 14.82 0.10 -13.57 16 16 C -0.42 -26.05 9.65 67.95 0.66 -25.40 16 17 H 0.07 4.64 6.86 -2.91 -0.02 4.62 16 18 C 0.00 -0.05 5.49 84.88 0.47 0.41 16 19 N -0.90 -53.33 13.67 21.63 0.30 -53.04 16 20 Si 1.01 44.80 29.55 68.60 2.03 46.83 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.39 6.60 -2.39 -0.02 1.37 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 2.25 5.49 -2.39 -0.01 2.24 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.71 7.90 -2.39 -0.02 1.70 16 32 H 0.11 2.44 6.11 -2.39 -0.01 2.42 16 33 H 0.04 1.69 6.01 -2.39 -0.01 1.67 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.31 6.49 -2.39 -0.02 1.30 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -71.93 335.92 7.40 -64.53 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.95 Total: 22.26 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 3.75 Total: -34.92 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.30 Total: -53.04 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: 0.38 Total: -45.67 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.93 7.40 -64.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734613521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.913 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds