Wall clock time and date at job start Mon Mar 30 2020 00:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47528 * 2 1 4 4 C 1.53005 * 109.47076 * 119.99814 * 2 1 3 5 5 H 1.09004 * 109.46976 * 305.68938 * 4 2 1 6 6 C 1.53000 * 109.47180 * 185.69283 * 4 2 1 7 7 C 1.52998 * 109.47398 * 173.20921 * 6 4 2 8 8 C 1.52992 * 109.47526 * 174.46436 * 7 6 4 9 9 C 1.52998 * 109.47526 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47100 * 300.00371 * 9 8 7 11 11 C 1.52997 * 109.47497 * 59.99648 * 10 9 8 12 12 C 1.52997 * 109.47100 * 294.46806 * 7 6 4 13 13 C 1.50699 * 109.47220 * 65.69083 * 4 2 1 14 14 O 1.21206 * 119.99911 * 120.00030 * 13 4 2 15 15 O 1.34316 * 119.99650 * 299.99892 * 13 4 2 16 16 C 1.34917 * 116.99697 * 180.02562 * 15 13 4 17 17 H 1.08004 * 120.00324 * 359.97438 * 16 15 13 18 18 C 1.38752 * 120.00133 * 180.02562 * 16 15 13 19 19 N 1.31436 * 119.99791 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99991 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47331 * 89.99949 * 20 18 16 22 22 H 1.48502 * 109.47094 * 209.99356 * 20 18 16 23 23 H 1.48496 * 109.47576 * 329.99473 * 20 18 16 24 24 H 1.09004 * 109.46969 * 300.00487 * 1 2 3 25 25 H 1.08999 * 109.47010 * 60.00013 * 1 2 3 26 26 H 1.08994 * 109.47644 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47672 * 239.99600 * 2 1 3 28 28 H 1.09000 * 109.47343 * 176.48769 * 3 2 1 29 29 H 1.09005 * 109.46786 * 296.48855 * 3 2 1 30 30 H 1.09000 * 109.47447 * 56.48035 * 3 2 1 31 31 H 1.08998 * 109.47427 * 53.20713 * 6 4 2 32 32 H 1.08998 * 109.47079 * 293.20825 * 6 4 2 33 33 H 1.09010 * 109.46820 * 54.46210 * 7 6 4 34 34 H 1.09000 * 109.47252 * 59.99886 * 8 7 6 35 35 H 1.09005 * 109.47205 * 300.00190 * 8 7 6 36 36 H 1.09001 * 109.47601 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.47108 * 60.00468 * 9 8 7 38 38 H 1.09001 * 109.47323 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.47182 * 299.99477 * 10 9 8 40 40 H 1.09008 * 109.47047 * 59.99591 * 11 10 9 41 41 H 1.08991 * 109.47623 * 180.02562 * 11 10 9 42 42 H 1.08998 * 109.47182 * 299.99477 * 12 7 6 43 43 H 1.09007 * 109.47522 * 59.99686 * 12 7 6 44 44 H 0.97005 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5958 -0.2695 2.1364 6 6 3.5632 -0.5985 1.3229 7 6 4.0573 -1.1702 2.6533 8 6 5.5871 -1.1744 2.6699 9 6 6.0812 -1.7455 4.0006 10 6 5.5610 -0.8813 5.1510 11 6 4.0311 -0.8771 5.1344 12 6 3.5371 -0.3065 3.8041 13 6 1.6559 -2.1769 1.1809 14 8 2.5154 -3.0314 1.1902 15 8 0.3612 -2.5272 1.1098 16 6 0.0861 -3.8467 1.0517 17 1 0.8906 -4.5672 1.0631 18 6 -1.2305 -4.2783 0.9763 19 7 -2.2096 -3.4015 0.9619 20 14 -1.6114 -6.1052 0.8966 21 1 -1.7768 -6.6370 2.2732 22 1 -2.8659 -6.3164 0.1304 23 1 -0.4945 -6.8149 0.2227 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1282 1.4431 0.0630 29 1 1.7290 1.9378 -0.9198 30 1 1.6262 1.9743 0.8567 31 1 3.8471 0.4514 1.2508 32 1 4.0127 -1.1537 0.4996 33 1 3.6898 -2.1899 2.7694 34 1 5.9546 -0.1548 2.5538 35 1 5.9577 -1.7898 1.8501 36 1 7.1711 -1.7481 4.0126 37 1 5.7138 -2.7651 4.1172 38 1 5.9126 -1.2884 6.0990 39 1 5.9284 0.1382 5.0345 40 1 3.6637 -1.8967 5.2509 41 1 3.6606 -0.2611 5.9537 42 1 3.9045 0.7131 3.6880 43 1 2.4471 -0.3035 3.7923 44 1 -3.1300 -3.7032 0.9096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734613522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:32 Heat of formation + Delta-G solvation = -129.481270 kcal Electronic energy + Delta-G solvation = -22004.328939 eV Core-core repulsion = 18920.124962 eV Total energy + Delta-G solvation = -3084.203976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.68514 -38.20853 -36.14617 -34.94893 -32.26957 -31.98042 -30.57141 -28.30912 -27.02501 -25.32368 -23.91692 -22.39921 -21.12084 -20.44246 -19.43500 -18.89619 -17.66553 -16.68615 -15.45872 -14.91607 -14.54102 -14.29956 -14.11242 -13.95991 -13.94231 -13.56131 -13.29315 -12.76564 -12.37676 -12.16297 -11.90184 -11.83336 -11.71795 -11.67912 -11.51735 -11.20650 -10.94427 -10.87653 -10.68733 -10.58995 -10.44448 -10.31460 -10.27734 -10.15032 -9.86030 -9.68661 -9.64739 -9.47307 -8.74400 -8.50032 -6.35098 -4.01648 3.14870 3.22079 3.27583 3.62912 4.00696 4.64195 4.83285 4.92329 4.94969 5.13946 5.21631 5.31483 5.40882 5.43960 5.54497 5.65529 5.68493 5.72514 5.74066 5.82875 5.85620 5.92946 6.00872 6.08607 6.15762 6.17206 6.21069 6.29062 6.32087 6.38520 6.41875 6.45260 6.48815 6.56732 6.61395 6.71713 6.79864 6.88687 6.99748 7.39635 7.50572 8.04200 8.82488 9.15181 9.96775 10.82951 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.005978 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.263937 B = 4682.652363 C = 5684.963577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.069 4.069 5 H 0.093 0.907 6 C -0.096 4.096 7 C -0.095 4.095 8 C -0.108 4.108 9 C -0.119 4.119 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.116 4.116 13 C 0.404 3.596 14 O -0.553 6.553 15 O -0.210 6.210 16 C -0.382 4.382 17 H 0.092 0.908 18 C 0.043 3.957 19 N -0.866 5.866 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.268 1.268 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.518 8.537 3.455 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.088 4.088 5 H 0.111 0.889 6 C -0.133 4.133 7 C -0.113 4.113 8 C -0.146 4.146 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.158 4.158 12 C -0.153 4.153 13 C 0.251 3.749 14 O -0.450 6.450 15 O -0.117 6.117 16 C -0.459 4.459 17 H 0.110 0.890 18 C -0.161 4.161 19 N -0.503 5.503 20 Si 0.763 3.237 21 H -0.200 1.200 22 H -0.204 1.204 23 H -0.193 1.193 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.480 8.312 3.439 13.812 hybrid contribution -0.296 -0.896 -0.015 0.944 sum 10.185 7.416 3.425 13.056 Atomic orbital electron populations 1.22066 0.93566 1.05663 1.00239 1.21007 0.97271 0.95186 0.96842 1.21951 1.00827 0.96102 1.01484 1.21001 0.96576 0.91108 1.00140 0.88919 1.21551 0.93208 1.00418 0.98154 1.21302 0.94617 1.01632 0.93751 1.21509 0.95846 1.00302 0.96921 1.21527 0.99434 0.99698 0.95044 1.21512 0.96023 0.99815 0.98027 1.21520 0.95384 1.01433 0.97428 1.21642 1.00570 0.98731 0.94375 1.23202 0.82661 0.91099 0.77955 1.90511 1.51067 1.52623 1.50791 1.83923 1.24283 1.28115 1.75372 1.21197 0.93064 0.79748 1.51848 0.88996 1.25247 0.94373 1.00005 0.96467 1.69975 0.99498 1.33838 1.47027 0.85760 0.78192 0.81202 0.78568 1.20046 1.20445 1.19254 0.93253 0.93846 0.88296 0.91420 0.92448 0.92939 0.92748 0.91362 0.91400 0.88962 0.92727 0.92162 0.92647 0.91939 0.92643 0.92409 0.91934 0.92509 0.92533 0.91888 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.85 37.15 0.33 -2.63 16 2 C -0.08 -1.42 2.50 -90.62 -0.23 -1.65 16 3 C -0.15 -1.90 8.81 37.16 0.33 -1.57 16 4 C -0.07 -1.26 1.80 -91.77 -0.17 -1.43 16 5 H 0.09 1.65 6.30 -51.93 -0.33 1.32 16 6 C -0.10 -1.51 3.50 -26.73 -0.09 -1.61 16 7 C -0.09 -1.48 1.99 -90.63 -0.18 -1.66 16 8 C -0.11 -1.44 5.20 -26.74 -0.14 -1.58 16 9 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 10 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 11 C -0.12 -1.54 5.92 -26.76 -0.16 -1.69 16 12 C -0.12 -1.61 4.97 -26.76 -0.13 -1.74 16 13 C 0.40 9.79 6.86 36.01 0.25 10.03 16 14 O -0.55 -14.46 13.34 -19.05 -0.25 -14.72 16 15 O -0.21 -5.82 6.92 -20.71 -0.14 -5.96 16 16 C -0.38 -11.20 9.64 30.92 0.30 -10.90 16 17 H 0.09 2.74 6.86 -52.48 -0.36 2.38 16 18 C 0.04 1.19 5.49 -17.53 -0.10 1.10 16 19 N -0.87 -25.02 13.67 55.48 0.76 -24.26 16 20 Si 0.94 21.46 29.55 -169.99 -5.02 16.43 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 2.33 5.48 -51.93 -0.28 2.04 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.67 5.99 -51.93 -0.31 0.36 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.90 5.87 -51.93 -0.31 0.59 16 32 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 33 H 0.09 1.80 6.04 -51.92 -0.31 1.48 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.95 6.45 -51.93 -0.33 0.61 16 44 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -30.59 335.37 -7.61 -38.20 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.70 Total: 3.67 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.31 Total: -18.42 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.76 Total: -24.26 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.40 Total: -20.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.59 -7.61 -38.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734613522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.280 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds