Wall clock time and date at job start Mon Mar 30 2020 00:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47528 * 2 1 4 4 C 1.53005 * 109.47076 * 119.99814 * 2 1 3 5 5 H 1.09004 * 109.46976 * 305.68938 * 4 2 1 6 6 C 1.53000 * 109.47180 * 185.69283 * 4 2 1 7 7 C 1.52998 * 109.47398 * 173.20921 * 6 4 2 8 8 C 1.52992 * 109.47526 * 174.46436 * 7 6 4 9 9 C 1.52998 * 109.47526 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47100 * 300.00371 * 9 8 7 11 11 C 1.52997 * 109.47497 * 59.99648 * 10 9 8 12 12 C 1.52997 * 109.47100 * 294.46806 * 7 6 4 13 13 C 1.50699 * 109.47220 * 65.69083 * 4 2 1 14 14 O 1.21206 * 119.99911 * 120.00030 * 13 4 2 15 15 O 1.34316 * 119.99650 * 299.99892 * 13 4 2 16 16 C 1.34917 * 116.99697 * 180.02562 * 15 13 4 17 17 H 1.08004 * 120.00324 * 359.97438 * 16 15 13 18 18 C 1.38752 * 120.00133 * 180.02562 * 16 15 13 19 19 N 1.31436 * 119.99791 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99991 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47331 * 89.99949 * 20 18 16 22 22 H 1.48502 * 109.47094 * 209.99356 * 20 18 16 23 23 H 1.48496 * 109.47576 * 329.99473 * 20 18 16 24 24 H 1.09004 * 109.46969 * 300.00487 * 1 2 3 25 25 H 1.08999 * 109.47010 * 60.00013 * 1 2 3 26 26 H 1.08994 * 109.47644 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47672 * 239.99600 * 2 1 3 28 28 H 1.09000 * 109.47343 * 176.48769 * 3 2 1 29 29 H 1.09005 * 109.46786 * 296.48855 * 3 2 1 30 30 H 1.09000 * 109.47447 * 56.48035 * 3 2 1 31 31 H 1.08998 * 109.47427 * 53.20713 * 6 4 2 32 32 H 1.08998 * 109.47079 * 293.20825 * 6 4 2 33 33 H 1.09010 * 109.46820 * 54.46210 * 7 6 4 34 34 H 1.09000 * 109.47252 * 59.99886 * 8 7 6 35 35 H 1.09005 * 109.47205 * 300.00190 * 8 7 6 36 36 H 1.09001 * 109.47601 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.47108 * 60.00468 * 9 8 7 38 38 H 1.09001 * 109.47323 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.47182 * 299.99477 * 10 9 8 40 40 H 1.09008 * 109.47047 * 59.99591 * 11 10 9 41 41 H 1.08991 * 109.47623 * 180.02562 * 11 10 9 42 42 H 1.08998 * 109.47182 * 299.99477 * 12 7 6 43 43 H 1.09007 * 109.47522 * 59.99686 * 12 7 6 44 44 H 0.97005 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5958 -0.2695 2.1364 6 6 3.5632 -0.5985 1.3229 7 6 4.0573 -1.1702 2.6533 8 6 5.5871 -1.1744 2.6699 9 6 6.0812 -1.7455 4.0006 10 6 5.5610 -0.8813 5.1510 11 6 4.0311 -0.8771 5.1344 12 6 3.5371 -0.3065 3.8041 13 6 1.6559 -2.1769 1.1809 14 8 2.5154 -3.0314 1.1902 15 8 0.3612 -2.5272 1.1098 16 6 0.0861 -3.8467 1.0517 17 1 0.8906 -4.5672 1.0631 18 6 -1.2305 -4.2783 0.9763 19 7 -2.2096 -3.4015 0.9619 20 14 -1.6114 -6.1052 0.8966 21 1 -1.7768 -6.6370 2.2732 22 1 -2.8659 -6.3164 0.1304 23 1 -0.4945 -6.8149 0.2227 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1282 1.4431 0.0630 29 1 1.7290 1.9378 -0.9198 30 1 1.6262 1.9743 0.8567 31 1 3.8471 0.4514 1.2508 32 1 4.0127 -1.1537 0.4996 33 1 3.6898 -2.1899 2.7694 34 1 5.9546 -0.1548 2.5538 35 1 5.9577 -1.7898 1.8501 36 1 7.1711 -1.7481 4.0126 37 1 5.7138 -2.7651 4.1172 38 1 5.9126 -1.2884 6.0990 39 1 5.9284 0.1382 5.0345 40 1 3.6637 -1.8967 5.2509 41 1 3.6606 -0.2611 5.9537 42 1 3.9045 0.7131 3.6880 43 1 2.4471 -0.3035 3.7923 44 1 -3.1300 -3.7032 0.9096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734613522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:31 Heat of formation + Delta-G solvation = -145.164340 kcal Electronic energy + Delta-G solvation = -22005.009008 eV Core-core repulsion = 18920.124962 eV Total energy + Delta-G solvation = -3084.884045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43080 -39.59247 -37.64780 -36.89365 -34.24778 -33.39874 -31.61456 -29.68218 -28.40650 -27.25211 -25.35951 -23.47356 -22.66344 -21.70843 -20.60037 -20.47491 -19.82140 -18.54197 -16.92176 -16.72039 -16.24849 -16.03250 -15.32317 -15.29676 -15.06438 -14.78128 -14.61643 -14.52273 -13.77574 -13.63355 -13.34977 -13.15633 -13.10335 -12.95407 -12.94866 -12.75415 -12.40509 -12.20617 -12.19452 -12.04746 -11.96313 -11.82617 -11.54670 -11.51267 -11.43579 -11.23155 -10.80880 -10.73272 -10.66653 -10.60283 -8.50239 -6.27931 1.31087 1.31865 1.47808 1.71419 2.12870 2.85434 3.00364 3.62256 3.80579 3.87306 4.02321 4.03025 4.10499 4.30872 4.41721 4.47414 4.55807 4.57834 4.66094 4.69054 4.69765 4.77540 4.83630 4.86973 4.88970 4.97810 5.06473 5.11616 5.15272 5.16660 5.21372 5.24321 5.28385 5.31525 5.39089 5.44078 5.47312 5.49961 5.59082 5.70750 5.76929 5.91154 6.77580 6.96172 7.87647 8.69828 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.005978 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.263937 B = 4682.652363 C = 5684.963577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.061 4.061 5 H 0.102 0.898 6 C -0.089 4.089 7 C -0.095 4.095 8 C -0.104 4.104 9 C -0.121 4.121 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.398 3.602 14 O -0.579 6.579 15 O -0.231 6.231 16 C -0.421 4.421 17 H 0.073 0.927 18 C -0.001 4.001 19 N -0.897 5.897 20 Si 1.008 2.992 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.268 1.268 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.729 10.605 3.841 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.080 4.080 5 H 0.120 0.880 6 C -0.126 4.126 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.158 4.158 10 C -0.148 4.148 11 C -0.160 4.160 12 C -0.150 4.150 13 C 0.246 3.754 14 O -0.477 6.477 15 O -0.139 6.139 16 C -0.497 4.497 17 H 0.091 0.909 18 C -0.201 4.201 19 N -0.535 5.535 20 Si 0.828 3.172 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.192 1.192 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.699 10.399 3.828 16.114 hybrid contribution -0.646 -1.523 -0.137 1.660 sum 11.052 8.876 3.691 14.648 Atomic orbital electron populations 1.21970 0.95164 1.02475 1.01497 1.21014 0.95846 0.97920 0.95188 1.21889 1.01929 0.92548 1.03014 1.21187 0.98668 0.86750 1.01429 0.88045 1.21590 0.90770 1.02584 0.97663 1.21231 0.96504 0.99137 0.94530 1.21481 0.93780 1.01758 0.97158 1.21544 1.00685 0.98573 0.95021 1.21492 0.94450 1.00790 0.98056 1.21543 0.96879 1.00099 0.97480 1.21622 0.99449 0.99873 0.94069 1.24565 0.81423 0.93662 0.75773 1.90484 1.51441 1.54283 1.51466 1.83998 1.26166 1.27358 1.76412 1.21322 0.93522 0.80471 1.54393 0.90932 1.26341 0.93488 1.05191 0.95076 1.70062 1.00107 1.36217 1.47096 0.84758 0.78456 0.74696 0.79304 1.18737 1.18357 1.19229 0.92678 0.91864 0.93574 0.92765 0.90532 0.91328 0.91434 0.87198 0.93130 0.94124 0.89928 0.93389 0.90522 0.94402 0.91481 0.90284 0.94679 0.90807 0.89541 0.93756 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 8.85 71.98 0.64 -5.17 16 2 C -0.08 -2.66 2.50 -10.79 -0.03 -2.69 16 3 C -0.14 -3.05 8.81 71.98 0.63 -2.41 16 4 C -0.06 -2.26 1.80 -11.54 -0.02 -2.29 16 5 H 0.10 3.59 6.30 -2.38 -0.02 3.58 16 6 C -0.09 -2.71 3.50 30.59 0.11 -2.61 16 7 C -0.10 -2.96 1.99 -10.80 -0.02 -2.98 16 8 C -0.10 -2.61 5.20 30.59 0.16 -2.45 16 9 C -0.12 -2.78 5.92 30.59 0.18 -2.60 16 10 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 11 C -0.12 -2.99 5.92 30.58 0.18 -2.81 16 12 C -0.11 -2.96 4.97 30.58 0.15 -2.81 16 13 C 0.40 20.38 6.86 71.24 0.49 20.87 16 14 O -0.58 -32.38 13.34 20.78 0.28 -32.10 16 15 O -0.23 -13.65 6.92 14.85 0.10 -13.55 16 16 C -0.42 -26.11 9.64 67.94 0.66 -25.45 16 17 H 0.07 4.64 6.86 -2.91 -0.02 4.62 16 18 C 0.00 -0.03 5.49 84.87 0.47 0.43 16 19 N -0.90 -53.33 13.67 21.62 0.30 -53.04 16 20 Si 1.01 44.79 29.55 68.60 2.03 46.82 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 2.27 5.48 -2.39 -0.01 2.25 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.43 5.99 -2.39 -0.01 1.42 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 2.46 5.87 -2.39 -0.01 2.44 16 32 H 0.05 1.72 7.89 -2.39 -0.02 1.70 16 33 H 0.04 1.68 6.04 -2.38 -0.01 1.67 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.04 1.31 6.45 -2.38 -0.02 1.29 16 44 H 0.28 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -71.87 335.37 7.43 -64.44 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.95 Total: 22.44 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.77 Total: -35.01 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.30 Total: -53.04 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: 0.38 Total: -45.65 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.87 7.43 -64.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734613522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.727 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds