Wall clock time and date at job start Mon Mar 30 2020 01:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 108.96783 * 2 1 4 4 C 1.54170 * 108.98306 * 118.81267 * 2 1 3 5 5 C 1.50750 * 112.61070 * 79.12779 * 4 2 1 6 6 C 1.54426 * 109.02745 * 93.01924 * 5 4 2 7 7 N 1.39776 * 111.77000 * 282.58937 * 6 5 4 8 8 C 1.46906 * 111.00154 * 189.12690 * 7 6 5 9 9 C 1.50703 * 109.47109 * 66.04496 * 8 7 6 10 10 O 1.21282 * 120.00082 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99978 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99846 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46919 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99838 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99810 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00245 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99747 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47494 * 89.99947 * 17 15 13 19 19 H 1.48508 * 109.46676 * 209.99921 * 17 15 13 20 20 H 1.48502 * 109.46977 * 329.99219 * 17 15 13 21 21 C 1.47628 * 114.75702 * 62.27475 * 7 6 5 22 22 C 1.50817 * 108.05292 * 277.19838 * 21 7 6 23 23 H 1.08999 * 109.47440 * 301.18896 * 1 2 3 24 24 H 1.09006 * 109.47528 * 61.18987 * 1 2 3 25 25 H 1.08997 * 109.47528 * 181.19018 * 1 2 3 26 26 H 1.09003 * 109.47441 * 178.81128 * 3 2 1 27 27 H 1.09006 * 109.47139 * 298.81109 * 3 2 1 28 28 H 1.08998 * 109.46859 * 58.80928 * 3 2 1 29 29 H 1.09004 * 108.85016 * 318.32344 * 4 2 1 30 30 H 1.08994 * 108.85797 * 199.93754 * 4 2 1 31 31 H 1.09003 * 109.54679 * 333.15162 * 5 4 2 32 32 H 1.09002 * 109.54648 * 212.88648 * 5 4 2 33 33 H 1.09011 * 109.02262 * 161.99856 * 6 5 4 34 34 H 1.09002 * 109.02456 * 43.18265 * 6 5 4 35 35 H 1.08992 * 109.47459 * 186.04415 * 8 7 6 36 36 H 1.09004 * 109.47040 * 306.04566 * 8 7 6 37 37 H 0.97002 * 119.99767 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47703 * 299.99475 * 12 11 9 39 39 H 1.09001 * 109.47464 * 60.00214 * 12 11 9 40 40 H 0.97006 * 120.00459 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.74777 * 36.83660 * 21 7 6 42 42 H 1.09002 * 109.74810 * 157.56302 * 21 7 6 43 43 H 1.09001 * 109.05197 * 334.50781 * 22 21 7 44 44 H 1.08997 * 108.99008 * 215.56846 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0273 1.4469 0.0000 4 6 2.0315 -0.7026 1.2774 5 6 1.9718 -2.2054 1.1737 6 6 3.3340 -2.7298 0.6698 7 7 3.4846 -2.5420 -0.7071 8 6 4.6807 -3.2344 -1.2052 9 6 4.4943 -4.7232 -1.0646 10 8 3.4666 -5.1641 -0.5953 11 7 5.4702 -5.5648 -1.4596 12 6 5.2888 -7.0121 -1.3234 13 6 6.5159 -7.7223 -1.8343 14 1 7.3478 -7.1526 -2.2212 15 6 6.5765 -9.0995 -1.8077 16 7 5.5637 -9.7933 -1.3360 17 14 8.0977 -9.9799 -2.4402 18 1 9.0624 -10.1637 -1.3264 19 1 7.7114 -11.3065 -2.9846 20 1 8.7285 -9.1694 -3.5129 21 6 3.4690 -1.1320 -1.1442 22 6 2.0302 -0.6993 -1.2755 23 1 -0.3634 0.5322 0.8791 24 1 -0.3634 0.4953 -0.9005 25 1 -0.3634 -1.0274 0.0213 26 1 3.1170 1.4566 0.0213 27 1 1.6770 1.9515 -0.9005 28 1 1.6420 1.9634 0.8791 29 1 1.4174 -0.3829 2.1194 30 1 3.0629 -0.4030 1.4624 31 1 1.1885 -2.4917 0.4719 32 1 1.7576 -2.6303 2.1544 33 1 3.4100 -3.7939 0.8936 34 1 4.1328 -2.2010 1.1899 35 1 4.8341 -2.9850 -2.2551 36 1 5.5495 -2.9207 -0.6265 37 1 6.2923 -5.2121 -1.8346 38 1 5.1347 -7.2619 -0.2737 39 1 4.4204 -7.3256 -1.9028 40 1 5.6062 -10.7622 -1.3176 41 1 3.9741 -0.5114 -0.4040 42 1 3.9707 -1.0394 -2.1074 43 1 1.4111 -1.5757 -1.4669 44 1 1.9422 -0.0112 -2.1163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741806448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:27 Heat of formation + Delta-G solvation = -49.343977 kcal Electronic energy + Delta-G solvation = -21152.580732 eV Core-core repulsion = 18104.144520 eV Total energy + Delta-G solvation = -3048.436212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11486 -38.49993 -35.92624 -34.07191 -32.48025 -32.22112 -30.02077 -27.86557 -27.43564 -26.36205 -24.80984 -22.80171 -22.33184 -20.58243 -19.60277 -18.35131 -17.12551 -16.20557 -15.79771 -15.48924 -15.17200 -14.95327 -14.47213 -14.35320 -14.00878 -13.75982 -13.27662 -12.94643 -12.72203 -12.63136 -12.28706 -12.18292 -11.90100 -11.88128 -11.75310 -11.54537 -11.36984 -10.98316 -10.92809 -10.82397 -10.63235 -10.41489 -10.31225 -10.19620 -10.16653 -9.37771 -8.93109 -8.71237 -7.98724 -7.79608 -6.15318 -4.22146 3.24721 3.30788 3.33221 3.43773 3.76041 4.29244 4.45856 4.58815 4.67107 4.75107 5.07704 5.11249 5.20481 5.20859 5.35039 5.41731 5.46906 5.50243 5.52691 5.57840 5.64060 5.65098 5.70232 5.72608 5.85196 5.91803 5.95848 6.03671 6.08826 6.15685 6.26478 6.34645 6.45260 6.55385 7.18057 7.37006 7.49081 7.54746 7.61187 7.70360 7.99188 8.67354 8.81515 9.16971 9.44792 10.94881 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051304 B = 0.003247 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.635842 B = 8620.648940 C = 8844.941984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.067 3.933 7 N -0.533 5.533 8 C 0.040 3.960 9 C 0.497 3.503 10 O -0.538 6.538 11 N -0.716 5.716 12 C 0.251 3.749 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.066 3.934 22 C -0.107 4.107 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.008 0.992 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.389 0.611 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 21.427 2.010 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.062 4.062 7 N -0.257 5.257 8 C -0.091 4.091 9 C 0.281 3.719 10 O -0.416 6.416 11 N -0.365 5.365 12 C 0.131 3.869 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.061 4.061 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.025 0.975 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.221 0.779 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.050 20.692 2.208 21.672 hybrid contribution 1.923 -0.032 -0.139 1.929 sum -4.127 20.660 2.069 21.170 Atomic orbital electron populations 1.21921 0.94796 1.01934 1.01157 1.20975 0.95433 0.94833 0.95195 1.21952 1.00863 0.95715 1.01343 1.21527 1.00768 0.95844 0.96484 1.21414 0.98178 0.94411 1.01120 1.21162 0.95505 1.03104 0.86466 1.58381 1.38699 1.12849 1.15803 1.22005 0.92017 0.93300 1.01729 1.20386 0.84269 0.88041 0.79231 1.90624 1.27745 1.78351 1.44875 1.46462 1.18127 1.09492 1.62425 1.19069 0.97282 0.73155 0.97433 1.21236 1.01832 0.91804 1.43255 0.91946 1.24953 0.96691 0.97342 0.95055 1.69974 1.30429 1.07031 1.44856 0.86423 0.82465 0.79021 0.79039 1.20495 1.21004 1.19752 1.21851 0.97216 0.87257 0.99745 1.21498 0.96496 1.00490 0.96056 0.93069 0.92957 0.92342 0.92878 0.92804 0.93052 0.92591 0.92633 0.90493 0.91776 0.88642 0.97450 0.88489 0.92664 0.77875 0.95673 0.95567 0.92462 0.94103 0.91148 0.90130 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.14 37.16 0.30 -0.94 16 2 C -0.06 -0.60 0.51 -153.47 -0.08 -0.68 16 3 C -0.14 -1.13 8.14 37.16 0.30 -0.83 16 4 C -0.11 -1.12 4.10 -27.25 -0.11 -1.23 16 5 C -0.11 -1.43 5.60 -27.11 -0.15 -1.58 16 6 C 0.07 0.98 4.59 -6.75 -0.03 0.95 16 7 N -0.53 -7.63 3.71 -241.45 -0.90 -8.53 16 8 C 0.04 0.59 5.44 -4.97 -0.03 0.56 16 9 C 0.50 9.92 7.44 -10.98 -0.08 9.84 16 10 O -0.54 -12.90 14.35 5.56 0.08 -12.82 16 11 N -0.72 -15.08 5.55 -61.47 -0.34 -15.42 16 12 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 13 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.07 0.73 5.30 -4.52 -0.02 0.71 16 22 C -0.11 -1.11 4.20 -27.40 -0.11 -1.23 16 23 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 26 H 0.05 0.43 7.40 -51.93 -0.38 0.04 16 27 H 0.05 0.40 8.07 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.53 7.97 -51.93 -0.41 0.12 16 30 H 0.05 0.58 6.39 -51.93 -0.33 0.25 16 31 H 0.08 1.06 6.33 -51.93 -0.33 0.73 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.74 5.53 -51.92 -0.29 1.45 16 34 H 0.01 0.11 7.54 -51.93 -0.39 -0.29 16 35 H 0.10 1.21 7.66 -51.93 -0.40 0.81 16 36 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.04 0.43 5.92 -51.93 -0.31 0.13 16 42 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 43 H 0.08 1.00 7.10 -51.93 -0.37 0.63 16 44 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -31.25 335.28 -8.49 -39.75 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.65 Total: 2.78 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.46 Total: -1.20 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.50 Total: -49.44 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.25 -8.49 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741806448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.598 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds