Wall clock time and date at job start Mon Mar 30 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 108.96783 * 2 1 4 4 C 1.54170 * 108.98306 * 118.81267 * 2 1 3 5 5 C 1.50750 * 112.61070 * 79.12779 * 4 2 1 6 6 C 1.54426 * 109.02745 * 93.01924 * 5 4 2 7 7 N 1.39776 * 111.77000 * 282.58937 * 6 5 4 8 8 C 1.46906 * 111.00154 * 189.12690 * 7 6 5 9 9 C 1.50703 * 109.47109 * 66.04496 * 8 7 6 10 10 O 1.21282 * 120.00082 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99978 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99846 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46919 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99838 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99810 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00245 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99747 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47494 * 89.99947 * 17 15 13 19 19 H 1.48508 * 109.46676 * 209.99921 * 17 15 13 20 20 H 1.48502 * 109.46977 * 329.99219 * 17 15 13 21 21 C 1.47628 * 114.75702 * 62.27475 * 7 6 5 22 22 C 1.50817 * 108.05292 * 277.19838 * 21 7 6 23 23 H 1.08999 * 109.47440 * 301.18896 * 1 2 3 24 24 H 1.09006 * 109.47528 * 61.18987 * 1 2 3 25 25 H 1.08997 * 109.47528 * 181.19018 * 1 2 3 26 26 H 1.09003 * 109.47441 * 178.81128 * 3 2 1 27 27 H 1.09006 * 109.47139 * 298.81109 * 3 2 1 28 28 H 1.08998 * 109.46859 * 58.80928 * 3 2 1 29 29 H 1.09004 * 108.85016 * 318.32344 * 4 2 1 30 30 H 1.08994 * 108.85797 * 199.93754 * 4 2 1 31 31 H 1.09003 * 109.54679 * 333.15162 * 5 4 2 32 32 H 1.09002 * 109.54648 * 212.88648 * 5 4 2 33 33 H 1.09011 * 109.02262 * 161.99856 * 6 5 4 34 34 H 1.09002 * 109.02456 * 43.18265 * 6 5 4 35 35 H 1.08992 * 109.47459 * 186.04415 * 8 7 6 36 36 H 1.09004 * 109.47040 * 306.04566 * 8 7 6 37 37 H 0.97002 * 119.99767 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47703 * 299.99475 * 12 11 9 39 39 H 1.09001 * 109.47464 * 60.00214 * 12 11 9 40 40 H 0.97006 * 120.00459 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.74777 * 36.83660 * 21 7 6 42 42 H 1.09002 * 109.74810 * 157.56302 * 21 7 6 43 43 H 1.09001 * 109.05197 * 334.50781 * 22 21 7 44 44 H 1.08997 * 108.99008 * 215.56846 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0273 1.4469 0.0000 4 6 2.0315 -0.7026 1.2774 5 6 1.9718 -2.2054 1.1737 6 6 3.3340 -2.7298 0.6698 7 7 3.4846 -2.5420 -0.7071 8 6 4.6807 -3.2344 -1.2052 9 6 4.4943 -4.7232 -1.0646 10 8 3.4666 -5.1641 -0.5953 11 7 5.4702 -5.5648 -1.4596 12 6 5.2888 -7.0121 -1.3234 13 6 6.5159 -7.7223 -1.8343 14 1 7.3478 -7.1526 -2.2212 15 6 6.5765 -9.0995 -1.8077 16 7 5.5637 -9.7933 -1.3360 17 14 8.0977 -9.9799 -2.4402 18 1 9.0624 -10.1637 -1.3264 19 1 7.7114 -11.3065 -2.9846 20 1 8.7285 -9.1694 -3.5129 21 6 3.4690 -1.1320 -1.1442 22 6 2.0302 -0.6993 -1.2755 23 1 -0.3634 0.5322 0.8791 24 1 -0.3634 0.4953 -0.9005 25 1 -0.3634 -1.0274 0.0213 26 1 3.1170 1.4566 0.0213 27 1 1.6770 1.9515 -0.9005 28 1 1.6420 1.9634 0.8791 29 1 1.4174 -0.3829 2.1194 30 1 3.0629 -0.4030 1.4624 31 1 1.1885 -2.4917 0.4719 32 1 1.7576 -2.6303 2.1544 33 1 3.4100 -3.7939 0.8936 34 1 4.1328 -2.2010 1.1899 35 1 4.8341 -2.9850 -2.2551 36 1 5.5495 -2.9207 -0.6265 37 1 6.2923 -5.2121 -1.8346 38 1 5.1347 -7.2619 -0.2737 39 1 4.4204 -7.3256 -1.9028 40 1 5.6062 -10.7622 -1.3176 41 1 3.9741 -0.5114 -0.4040 42 1 3.9707 -1.0394 -2.1074 43 1 1.4111 -1.5757 -1.4669 44 1 1.9422 -0.0112 -2.1163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741806448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:26 Heat of formation + Delta-G solvation = -70.779965 kcal Electronic energy + Delta-G solvation = -21153.510266 eV Core-core repulsion = 18104.144520 eV Total energy + Delta-G solvation = -3049.365746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26996 -39.91598 -37.01258 -35.99709 -34.34674 -33.35631 -31.11635 -29.51328 -28.08689 -27.73771 -26.00484 -24.34413 -23.58009 -21.73201 -21.25686 -19.17498 -18.90476 -17.59043 -17.38407 -16.70980 -16.59832 -16.37813 -15.81549 -15.68641 -15.16813 -14.95911 -14.42223 -14.27858 -14.00636 -13.91552 -13.71139 -13.35628 -13.16714 -12.89003 -12.83724 -12.70445 -12.62690 -12.58690 -12.28349 -12.22337 -11.86130 -11.60557 -11.48276 -11.21497 -11.11940 -11.01246 -10.79500 -10.56199 -9.78177 -9.05348 -8.28937 -6.45734 1.42905 1.45513 1.56770 1.82953 2.29214 2.49114 3.05820 3.13745 3.77781 3.81616 3.95705 4.01912 4.21225 4.22691 4.28701 4.37274 4.42957 4.60284 4.67278 4.70007 4.79302 4.80571 4.88901 4.94167 5.01104 5.10427 5.12955 5.15809 5.19641 5.25085 5.25460 5.31113 5.44829 5.49675 5.50033 5.52791 5.69682 5.72689 5.85848 6.15995 6.54170 6.65952 6.98182 7.24163 7.56525 8.83322 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051304 B = 0.003247 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.635842 B = 8620.648940 C = 8844.941984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.103 4.103 5 C -0.109 4.109 6 C 0.072 3.928 7 N -0.553 5.553 8 C 0.054 3.946 9 C 0.491 3.509 10 O -0.585 6.585 11 N -0.711 5.711 12 C 0.269 3.731 13 C -0.555 4.555 14 H 0.084 0.916 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.985 3.015 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.068 3.932 22 C -0.106 4.106 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.019 0.981 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.408 0.592 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.268 0.732 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 24.031 0.984 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.194 4.194 4 C -0.141 4.141 5 C -0.147 4.147 6 C -0.057 4.057 7 N -0.278 5.278 8 C -0.076 4.076 9 C 0.278 3.722 10 O -0.465 6.465 11 N -0.362 5.362 12 C 0.146 3.854 13 C -0.593 4.593 14 H 0.102 0.898 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.808 3.192 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.057 4.057 22 C -0.144 4.144 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.146 0.854 36 H 0.100 0.900 37 H 0.243 0.757 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.119 23.359 1.169 23.748 hybrid contribution 1.232 -0.832 0.215 1.502 sum -2.887 22.527 1.384 22.753 Atomic orbital electron populations 1.21906 0.94623 1.01159 1.01994 1.20969 0.95603 0.95672 0.94077 1.21902 1.01033 0.94340 1.02119 1.21467 1.01262 0.93738 0.97591 1.21357 0.96506 0.96432 1.00368 1.21014 0.96952 1.00516 0.87260 1.58332 1.38886 1.15115 1.15465 1.21959 0.93130 0.88437 1.04111 1.21493 0.82905 0.90454 0.77334 1.90611 1.29669 1.79721 1.46504 1.46199 1.19555 1.07374 1.63035 1.18479 0.96097 0.76702 0.94124 1.21634 1.02196 0.92431 1.43060 0.89752 1.26090 1.00285 0.98387 0.94965 1.70144 1.33166 1.07495 1.46265 0.85148 0.77767 0.77409 0.78837 1.19613 1.21000 1.17795 1.21954 0.97908 0.84988 1.00856 1.21485 0.95696 0.99897 0.97295 0.92203 0.92155 0.93945 0.92553 0.91915 0.92472 0.91616 0.92287 0.92239 0.91977 0.93074 0.96364 0.85361 0.90004 0.75669 0.99785 0.99751 0.92279 0.92904 0.89272 0.92777 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.14 71.98 0.59 -1.68 16 2 C -0.06 -1.05 0.51 -51.51 -0.03 -1.07 16 3 C -0.14 -1.74 8.14 71.98 0.59 -1.16 16 4 C -0.10 -1.96 4.10 30.26 0.12 -1.84 16 5 C -0.11 -2.77 5.60 30.35 0.17 -2.60 16 6 C 0.07 2.13 4.59 88.07 0.40 2.54 16 7 N -0.55 -15.27 3.71 -917.81 -3.40 -18.67 16 8 C 0.05 1.47 5.44 85.56 0.47 1.94 16 9 C 0.49 19.98 7.44 87.66 0.65 20.63 16 10 O -0.58 -29.65 14.35 -3.04 -0.04 -29.69 16 11 N -0.71 -30.34 5.55 -466.79 -2.59 -32.93 16 12 C 0.27 15.03 5.43 85.64 0.46 15.49 16 13 C -0.56 -30.50 9.28 25.60 0.24 -30.26 16 14 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 17 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 21 C 0.07 1.33 5.30 85.45 0.45 1.78 16 22 C -0.11 -1.98 4.20 30.16 0.13 -1.86 16 23 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 24 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.04 0.82 7.38 -2.39 -0.02 0.80 16 26 H 0.06 0.69 7.40 -2.39 -0.02 0.68 16 27 H 0.06 0.71 8.07 -2.38 -0.02 0.69 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 1.13 7.97 -2.38 -0.02 1.11 16 30 H 0.06 1.10 6.39 -2.39 -0.02 1.08 16 31 H 0.06 1.71 6.33 -2.39 -0.02 1.70 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.97 5.53 -2.38 -0.01 1.96 16 34 H 0.02 0.49 7.54 -2.39 -0.02 0.48 16 35 H 0.13 2.74 7.66 -2.39 -0.02 2.72 16 36 H 0.08 1.86 8.11 -2.38 -0.02 1.84 16 37 H 0.41 14.15 8.32 -92.71 -0.77 13.38 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 41 H 0.05 0.93 5.92 -2.39 -0.01 0.91 16 42 H 0.09 1.41 7.52 -2.39 -0.02 1.39 16 43 H 0.05 1.32 7.10 -2.39 -0.02 1.31 16 44 H 0.08 1.20 7.92 -2.39 -0.02 1.18 16 Total: -1.00 -71.84 335.28 1.18 -70.66 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.20 Total: 20.25 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 4.71 Total: 2.49 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -5.71 Total: -108.28 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.04 Total: -29.69 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.84 1.18 -70.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741806448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.119 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds