Wall clock time and date at job start Mon Mar 30 2020 00:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48500 * 109.46816 * 239.99845 * 3 2 1 5 5 H 1.48496 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47339 * 120.00133 * 3 2 1 7 7 C 1.37880 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99675 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47005 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.34233 * 117.00093 * 179.97438 * 12 11 10 14 14 O 1.20831 * 119.99968 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00088 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47279 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47400 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97002 * 120.00534 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46764 * 60.00767 * 9 7 2 25 25 H 1.08990 * 109.47621 * 299.99955 * 9 7 2 26 26 H 1.09008 * 109.46767 * 60.00379 * 10 9 7 27 27 H 1.09004 * 109.47150 * 300.00588 * 10 9 7 28 28 H 1.09001 * 109.47385 * 59.99952 * 11 10 9 29 29 H 1.09004 * 109.47325 * 300.00087 * 11 10 9 30 30 H 1.08999 * 109.47508 * 60.00041 * 15 13 12 31 31 H 1.09000 * 109.47087 * 299.99719 * 15 13 12 32 32 H 1.09001 * 109.47169 * 60.00300 * 16 15 13 33 33 H 1.09000 * 109.46864 * 299.99895 * 16 15 13 34 34 H 1.08995 * 109.46922 * 59.99869 * 17 16 15 35 35 H 1.09000 * 109.47141 * 299.99866 * 17 16 15 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0020 12 8 2.4240 -6.0907 0.0024 13 6 1.9109 -7.3311 0.0034 14 8 0.7131 -7.4894 0.0044 15 6 2.8289 -8.5262 0.0044 16 6 1.9957 -9.8094 0.0061 17 6 2.9277 -11.0228 0.0065 18 6 2.0945 -12.3059 0.0076 19 6 1.4082 -12.5212 -1.3650 20 6 1.1527 -14.0415 -1.4248 21 6 2.1676 -14.6967 -0.4717 22 6 3.0057 -13.5520 0.1343 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6248 -2.5564 0.8919 26 1 2.8727 -3.6039 0.8910 27 1 2.8714 -3.6047 -0.8890 28 1 0.8533 -5.0450 -0.8877 29 1 0.8541 -5.0447 0.8923 30 1 3.4578 -8.5006 0.8944 31 1 3.4578 -8.5021 -0.8856 32 1 1.3666 -9.8353 -0.8837 33 1 1.3672 -9.8332 0.8964 34 1 3.5572 -10.9971 0.8960 35 1 3.5559 -10.9987 -0.8839 36 1 1.3559 -12.2844 0.8089 37 1 2.0699 -12.2135 -2.1746 38 1 0.4666 -11.9741 -1.4117 39 1 1.3052 -14.4061 -2.4407 40 1 0.1368 -14.2624 -1.0977 41 1 1.6442 -15.2350 0.3184 42 1 2.8121 -15.3799 -1.0248 43 1 3.2295 -13.7561 1.1813 44 1 3.9268 -13.4127 -0.4316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744140701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:04 Heat of formation + Delta-G solvation = -145.754090 kcal Electronic energy + Delta-G solvation = -19481.014531 eV Core-core repulsion = 16396.104912 eV Total energy + Delta-G solvation = -3084.909619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22309 -38.77274 -36.57992 -34.60068 -33.96998 -31.72701 -30.45889 -29.00623 -27.29382 -25.96981 -23.40018 -22.21344 -20.71909 -20.39095 -20.21904 -20.03039 -17.37623 -16.63435 -16.50197 -16.14333 -15.83015 -15.23302 -15.07041 -14.47608 -14.10804 -13.71272 -13.50818 -13.06857 -12.97788 -12.49539 -12.18866 -11.99719 -11.86193 -11.69788 -11.62525 -11.38845 -11.13466 -10.94633 -10.93766 -10.83162 -10.74325 -10.67759 -10.63212 -10.61654 -10.34970 -10.27992 -9.70591 -9.48281 -9.16925 -8.38106 -6.02924 -4.06089 2.40193 2.95079 3.32714 3.36968 3.39624 4.21385 4.29449 4.37135 4.43807 4.69138 4.74770 4.82650 5.05185 5.11679 5.17959 5.23448 5.28776 5.32758 5.32864 5.41373 5.47357 5.49476 5.59793 5.60654 5.64181 5.65732 5.70282 5.79459 5.87847 5.94491 6.03675 6.03872 6.09931 6.18244 6.54820 6.55285 6.88216 7.00247 7.60642 7.72013 7.95031 7.99303 8.36563 8.99937 9.58016 11.08454 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.071785 B = 0.002120 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.957999 B =13202.819480 C =13422.660402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.361 6.361 13 C 0.454 3.546 14 O -0.515 6.515 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.111 4.111 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.121 4.121 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -27.882 -0.772 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.277 6.277 13 C 0.297 3.703 14 O -0.404 6.404 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.111 4.111 19 C -0.159 4.159 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.718 -27.765 -0.775 28.358 hybrid contribution 0.218 1.014 -0.006 1.037 sum 5.936 -26.751 -0.782 27.412 Atomic orbital electron populations 1.69956 1.06082 1.26869 1.50451 1.25037 0.94893 0.99370 0.95204 0.86594 0.79516 0.82865 0.78653 1.20190 1.21261 1.20188 1.21139 0.93088 0.90701 1.51116 0.92476 1.19051 0.93851 0.90766 0.97667 1.21762 0.99913 0.91080 1.01919 1.23477 0.91231 0.83738 1.02064 1.86501 1.42719 1.15371 1.83129 1.23715 0.88784 0.85184 0.72595 1.90653 1.17189 1.86939 1.45569 1.21416 0.98114 0.90075 1.05649 1.21452 0.97814 0.91472 1.03927 1.21593 0.97753 0.93205 1.02299 1.22159 0.97279 0.93861 0.97835 1.22469 1.00728 0.95596 0.97133 1.22140 0.99173 0.95677 0.99440 1.22127 0.97687 0.97831 0.98685 1.22422 0.98299 0.94478 1.00659 0.92838 0.96249 0.96243 0.92174 0.92177 0.91598 0.91607 0.87908 0.87916 0.90900 0.91033 0.91644 0.91618 0.90526 0.91530 0.91503 0.92058 0.92003 0.92052 0.92085 0.91816 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.31 5.53 -26.73 -0.15 -2.45 16 11 C 0.07 1.29 5.47 37.15 0.20 1.49 16 12 O -0.36 -6.12 10.22 -39.27 -0.40 -6.52 16 13 C 0.45 6.83 7.96 36.00 0.29 7.12 16 14 O -0.51 -9.24 15.73 -18.75 -0.30 -9.53 16 15 C -0.11 -1.13 5.81 -27.89 -0.16 -1.29 16 16 C -0.11 -0.99 4.40 -26.73 -0.12 -1.11 16 17 C -0.11 -0.77 4.72 -26.73 -0.13 -0.89 16 18 C -0.09 -0.65 2.86 -88.59 -0.25 -0.90 16 19 C -0.12 -0.88 5.71 -25.03 -0.14 -1.02 16 20 C -0.13 -0.83 6.80 -25.61 -0.17 -1.01 16 21 C -0.13 -0.77 6.80 -25.62 -0.17 -0.94 16 22 C -0.12 -0.75 6.27 -25.07 -0.16 -0.91 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 29 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.74 7.62 -51.93 -0.40 0.34 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.42 8.00 -51.93 -0.42 0.01 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 38 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -31.34 357.95 -9.47 -40.81 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -8.36 Total: -5.48 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.52 Total: -15.07 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.70 Total: -16.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.34 -9.47 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744140701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.943 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds