Wall clock time and date at job start Mon Mar 30 2020 00:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48500 * 109.46816 * 239.99845 * 3 2 1 5 5 H 1.48496 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47339 * 120.00133 * 3 2 1 7 7 C 1.37880 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99675 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47005 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.34233 * 117.00093 * 179.97438 * 12 11 10 14 14 O 1.20831 * 119.99968 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00088 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47279 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47400 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97002 * 120.00534 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46764 * 60.00767 * 9 7 2 25 25 H 1.08990 * 109.47621 * 299.99955 * 9 7 2 26 26 H 1.09008 * 109.46767 * 60.00379 * 10 9 7 27 27 H 1.09004 * 109.47150 * 300.00588 * 10 9 7 28 28 H 1.09001 * 109.47385 * 59.99952 * 11 10 9 29 29 H 1.09004 * 109.47325 * 300.00087 * 11 10 9 30 30 H 1.08999 * 109.47508 * 60.00041 * 15 13 12 31 31 H 1.09000 * 109.47087 * 299.99719 * 15 13 12 32 32 H 1.09001 * 109.47169 * 60.00300 * 16 15 13 33 33 H 1.09000 * 109.46864 * 299.99895 * 16 15 13 34 34 H 1.08995 * 109.46922 * 59.99869 * 17 16 15 35 35 H 1.09000 * 109.47141 * 299.99866 * 17 16 15 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0020 12 8 2.4240 -6.0907 0.0024 13 6 1.9109 -7.3311 0.0034 14 8 0.7131 -7.4894 0.0044 15 6 2.8289 -8.5262 0.0044 16 6 1.9957 -9.8094 0.0061 17 6 2.9277 -11.0228 0.0065 18 6 2.0945 -12.3059 0.0076 19 6 1.4082 -12.5212 -1.3650 20 6 1.1527 -14.0415 -1.4248 21 6 2.1676 -14.6967 -0.4717 22 6 3.0057 -13.5520 0.1343 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6248 -2.5564 0.8919 26 1 2.8727 -3.6039 0.8910 27 1 2.8714 -3.6047 -0.8890 28 1 0.8533 -5.0450 -0.8877 29 1 0.8541 -5.0447 0.8923 30 1 3.4578 -8.5006 0.8944 31 1 3.4578 -8.5021 -0.8856 32 1 1.3666 -9.8353 -0.8837 33 1 1.3672 -9.8332 0.8964 34 1 3.5572 -10.9971 0.8960 35 1 3.5559 -10.9987 -0.8839 36 1 1.3559 -12.2844 0.8089 37 1 2.0699 -12.2135 -2.1746 38 1 0.4666 -11.9741 -1.4117 39 1 1.3052 -14.4061 -2.4407 40 1 0.1368 -14.2624 -1.0977 41 1 1.6442 -15.2350 0.3184 42 1 2.8121 -15.3799 -1.0248 43 1 3.2295 -13.7561 1.1813 44 1 3.9268 -13.4127 -0.4316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744140701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:03 Heat of formation + Delta-G solvation = -160.421935 kcal Electronic energy + Delta-G solvation = -19481.650576 eV Core-core repulsion = 16396.104912 eV Total energy + Delta-G solvation = -3085.545664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50361 -39.33689 -37.93417 -35.93756 -35.36808 -33.69086 -31.21539 -29.52480 -29.04090 -26.92459 -25.12345 -23.14751 -22.17596 -21.54539 -20.86489 -20.77203 -18.77207 -18.38175 -17.86995 -17.19827 -16.72178 -16.50181 -16.20097 -15.73323 -15.34277 -14.69605 -14.28556 -14.24382 -14.03132 -13.82318 -13.75533 -13.51250 -13.01599 -12.79128 -12.53801 -12.49332 -12.35476 -12.15302 -12.07146 -11.90014 -11.80845 -11.78289 -11.56483 -11.41543 -11.39417 -11.35117 -11.23278 -11.19980 -11.15487 -10.57520 -8.22186 -6.34150 1.19811 1.41197 1.44752 1.52595 1.71993 2.41288 3.11380 3.61046 3.69532 3.77494 3.83973 3.97842 4.05889 4.09923 4.10671 4.37351 4.43801 4.49399 4.60306 4.66854 4.69652 4.76266 4.78199 4.80257 4.85901 4.92791 4.95700 5.03224 5.06958 5.10700 5.15964 5.26619 5.32737 5.36182 5.42812 5.44631 5.55224 5.56912 5.62221 5.62495 5.78965 6.18161 6.73065 6.81797 7.35342 8.89802 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.071785 B = 0.002120 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.957999 B =13202.819480 C =13422.660402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.077 3.923 12 O -0.361 6.361 13 C 0.450 3.550 14 O -0.549 6.549 15 C -0.105 4.105 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.094 4.094 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.118 4.118 23 H 0.265 0.735 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.667 -28.557 -0.751 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.003 3.997 12 O -0.277 6.277 13 C 0.295 3.705 14 O -0.440 6.440 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.140 4.140 18 C -0.113 4.113 19 C -0.162 4.162 20 C -0.166 4.166 21 C -0.164 4.164 22 C -0.156 4.156 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.157 -28.465 -0.755 29.620 hybrid contribution -0.589 1.147 -0.018 1.290 sum 7.568 -27.318 -0.773 28.357 Atomic orbital electron populations 1.70097 1.07913 1.28017 1.51345 1.26043 0.95821 1.03618 0.94564 0.85414 0.78166 0.77642 0.79307 1.19013 1.20929 1.19002 1.21599 0.93778 0.91836 1.51031 0.91580 1.18941 0.94297 0.92602 0.95377 1.21457 0.98698 0.90400 1.02579 1.23084 0.91038 0.84001 1.01538 1.86498 1.41982 1.15768 1.83469 1.24861 0.89245 0.85353 0.71025 1.90647 1.19047 1.87097 1.47170 1.21611 0.97409 0.87196 1.08015 1.21419 0.97981 0.92299 1.02589 1.21542 0.97301 0.91718 1.03470 1.22154 0.97356 0.94515 0.97265 1.22480 1.00253 0.95931 0.97507 1.22159 0.99261 0.95313 0.99890 1.22145 0.97653 0.97959 0.98657 1.22411 0.98239 0.93820 1.01105 0.92672 0.98592 0.98582 0.91413 0.91422 0.92212 0.92218 0.85306 0.85352 0.92348 0.92469 0.90342 0.90469 0.91440 0.91276 0.92750 0.91671 0.92343 0.91966 0.91394 0.91320 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.34 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 11 C 0.08 2.93 5.47 71.98 0.39 3.33 16 12 O -0.36 -11.82 10.22 -51.45 -0.53 -12.35 16 13 C 0.45 13.08 7.96 71.23 0.57 13.64 16 14 O -0.55 -19.83 15.73 21.95 0.35 -19.49 16 15 C -0.11 -1.80 5.81 29.85 0.17 -1.63 16 16 C -0.11 -1.77 4.40 30.60 0.13 -1.64 16 17 C -0.10 -1.18 4.72 30.59 0.14 -1.04 16 18 C -0.09 -1.19 2.86 -9.48 -0.03 -1.22 16 19 C -0.12 -1.70 5.71 31.70 0.18 -1.52 16 20 C -0.13 -1.58 6.80 31.32 0.21 -1.37 16 21 C -0.13 -1.37 6.80 31.32 0.21 -1.15 16 22 C -0.12 -1.24 6.27 31.67 0.20 -1.04 16 23 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 24 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 27 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 28 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 29 H 0.06 2.33 8.13 -2.38 -0.02 2.31 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.15 7.62 -2.39 -0.02 1.13 16 33 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.75 8.00 -2.39 -0.02 0.73 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.90 7.95 -2.39 -0.02 0.88 16 38 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.68 8.05 -2.39 -0.02 0.66 16 Total: -1.00 -67.80 357.95 6.26 -61.54 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.92 Total: 7.51 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.20 Total: -26.43 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.28 Total: -56.95 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.18 Total: -31.83 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.80 6.26 -61.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744140701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.879 kcal (2) G-P(sol) polarization free energy of solvation -67.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds