Wall clock time and date at job start Mon Mar 30 2020 01:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 8 8 H 1.09000 * 109.46870 * 60.00217 * 7 6 5 9 9 C 1.53000 * 109.47328 * 179.97438 * 7 6 5 10 10 C 1.50705 * 109.47020 * 295.00574 * 9 7 6 11 11 O 1.20823 * 120.00198 * 359.97438 * 10 9 7 12 12 O 1.34230 * 119.99690 * 179.97438 * 10 9 7 13 13 C 1.45203 * 116.99604 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47481 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47708 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99475 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00399 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99659 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46737 * 119.99865 * 20 18 16 23 23 H 1.48495 * 109.47281 * 239.99940 * 20 18 16 24 24 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 30 30 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 31 31 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 32 32 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 33 33 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.46990 * 54.99709 * 9 7 6 35 35 H 1.08991 * 109.47625 * 175.00207 * 9 7 6 36 36 H 1.09007 * 109.46859 * 299.99644 * 13 12 10 37 37 H 1.08999 * 109.47419 * 59.99905 * 13 12 10 38 38 H 1.09003 * 109.47140 * 299.99945 * 14 13 12 39 39 H 1.08999 * 109.47180 * 59.99639 * 14 13 12 40 40 H 1.09003 * 109.46944 * 300.00133 * 15 14 13 41 41 H 1.08999 * 109.47152 * 59.99691 * 15 14 13 42 42 H 0.96997 * 119.99817 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.47747 * 179.97438 * 24 2 1 44 44 H 1.09002 * 109.47103 * 300.00247 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4401 -2.1638 1.2491 9 6 2.0396 -2.8854 2.4983 10 6 1.4382 -4.2658 2.5614 11 8 0.6796 -4.6345 1.6962 12 8 1.7454 -5.0858 3.5787 13 6 1.1287 -6.4004 3.5750 14 6 1.5942 -7.1855 4.8029 15 6 0.9440 -8.5705 4.7994 16 6 1.4029 -9.3441 6.0085 17 1 2.0894 -8.8928 6.7096 18 6 0.9456 -10.6274 6.2202 19 7 0.1093 -11.1767 5.3668 20 14 1.5152 -11.5866 7.7187 21 1 2.4482 -10.7507 8.5161 22 1 0.3397 -11.9475 8.5514 23 1 2.2097 -12.8236 7.2800 24 6 2.0400 -0.7212 1.2491 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.6767 -0.2073 -2.1392 29 1 3.1300 -0.7208 -1.2496 30 1 1.8937 -2.6776 -2.1391 31 1 0.4400 -2.1637 -1.2493 32 1 3.1301 -2.8849 -0.0002 33 1 1.6771 -3.9128 -0.0004 34 1 3.1258 -2.9641 2.4548 35 1 1.7513 -2.3226 3.3861 36 1 0.0443 -6.2931 3.6025 37 1 1.4182 -6.9350 2.6703 38 1 2.6786 -7.2928 4.7760 39 1 1.3044 -6.6508 5.7074 40 1 -0.1404 -8.4628 4.8266 41 1 1.2334 -9.1055 3.8949 42 1 -0.2126 -12.0794 5.5160 43 1 3.1300 -0.7217 1.2489 44 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750245657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:22 Heat of formation + Delta-G solvation = -140.586894 kcal Electronic energy + Delta-G solvation = -20382.608756 eV Core-core repulsion = 17297.923204 eV Total energy + Delta-G solvation = -3084.685552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52329 -39.15576 -36.45036 -33.98056 -33.40491 -31.77552 -31.61481 -28.20012 -27.00692 -26.66928 -23.42570 -22.50555 -21.96601 -20.45516 -20.09516 -18.90592 -17.32234 -16.49825 -16.41023 -15.89523 -15.74818 -14.93811 -14.50990 -14.45741 -14.20986 -13.97589 -13.36714 -12.92563 -12.89631 -12.44764 -12.26190 -12.16629 -11.96580 -11.84742 -11.64820 -11.60883 -11.24389 -11.07590 -10.98006 -10.66421 -10.61761 -10.56424 -10.39649 -10.32250 -10.22045 -9.92213 -9.70607 -9.47203 -9.14413 -8.39219 -6.03692 -4.06644 2.40735 2.95986 3.29954 3.37348 3.41798 4.38001 4.42717 4.44784 4.48300 4.82192 4.84854 4.96803 5.10050 5.16967 5.25116 5.31988 5.32379 5.35358 5.39853 5.46700 5.51944 5.59936 5.64205 5.65318 5.70654 5.76071 5.82136 5.99254 6.02005 6.03701 6.05431 6.12720 6.28632 6.34862 6.55154 6.57419 6.89364 7.00622 7.60690 7.71619 7.94757 8.00819 8.36258 8.99958 9.57733 11.07847 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.055511 B = 0.002615 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.280809 B =10705.717208 C =10876.520849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.077 4.077 8 H 0.083 0.917 9 C -0.113 4.113 10 C 0.455 3.545 11 O -0.510 6.510 12 O -0.361 6.361 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.023 3.977 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.109 4.109 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.064 0.936 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 23.288 -11.094 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.096 4.096 8 H 0.102 0.898 9 C -0.150 4.150 10 C 0.298 3.702 11 O -0.399 6.399 12 O -0.277 6.277 13 C -0.005 4.005 14 C -0.147 4.147 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.675 22.971 -11.364 25.890 hybrid contribution 0.148 -0.763 0.738 1.072 sum 3.823 22.208 -10.626 24.914 Atomic orbital electron populations 1.21969 0.95313 1.02469 1.01332 1.21066 0.96021 0.98824 0.94930 0.91407 1.21586 1.00411 0.95979 0.97274 1.21533 1.01175 0.95131 0.97795 1.21738 1.00065 1.00694 0.93526 1.21047 1.01621 0.93914 0.92979 0.89844 1.21492 1.02526 0.89961 1.01044 1.23667 0.79250 0.87928 0.79317 1.90619 1.34248 1.76422 1.38608 1.86504 1.66764 1.27837 1.46637 1.23470 0.97407 0.78234 1.01358 1.21757 1.01191 0.97523 0.94190 1.19057 0.96014 0.88615 0.97690 1.21214 1.27484 0.98911 1.08255 0.92380 1.25036 0.95075 0.97732 0.96684 1.69975 1.32317 1.15005 1.36097 0.86491 0.78551 0.79901 0.82802 1.19667 1.20969 1.20963 1.21610 1.00677 0.94609 0.97760 0.92859 0.91700 0.92986 0.92305 0.92136 0.92257 0.91619 0.92485 0.90081 0.87951 0.87901 0.91620 0.91614 0.92195 0.92198 0.96252 0.96252 0.92945 0.91732 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.50 37.16 0.32 -0.82 16 2 C -0.09 -0.64 3.19 -90.62 -0.29 -0.93 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -0.85 5.45 -26.73 -0.15 -1.00 16 5 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 6 C -0.12 -1.25 4.94 -26.73 -0.13 -1.39 16 7 C -0.08 -0.73 1.56 -90.62 -0.14 -0.87 16 8 H 0.08 0.90 6.24 -51.93 -0.32 0.57 16 9 C -0.11 -1.13 5.29 -27.88 -0.15 -1.28 16 10 C 0.46 6.72 7.67 36.01 0.28 7.00 16 11 O -0.51 -8.77 13.72 -18.75 -0.26 -9.03 16 12 O -0.36 -6.06 10.22 -39.26 -0.40 -6.47 16 13 C 0.07 1.28 5.47 37.16 0.20 1.48 16 14 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.11 -0.80 4.73 -26.73 -0.13 -0.93 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -30.86 343.50 -8.75 -39.61 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -7.94 Total: -4.18 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.04 Total: -15.48 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.66 Total: -15.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.86 -8.75 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750245657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.979 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds