Wall clock time and date at job start Mon Mar 30 2020 01:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 8 8 H 1.09000 * 109.46870 * 60.00217 * 7 6 5 9 9 C 1.53000 * 109.47328 * 179.97438 * 7 6 5 10 10 C 1.50705 * 109.47020 * 295.00574 * 9 7 6 11 11 O 1.20823 * 120.00198 * 359.97438 * 10 9 7 12 12 O 1.34230 * 119.99690 * 179.97438 * 10 9 7 13 13 C 1.45203 * 116.99604 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47481 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47708 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99475 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00399 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99659 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46737 * 119.99865 * 20 18 16 23 23 H 1.48495 * 109.47281 * 239.99940 * 20 18 16 24 24 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 30 30 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 31 31 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 32 32 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 33 33 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.46990 * 54.99709 * 9 7 6 35 35 H 1.08991 * 109.47625 * 175.00207 * 9 7 6 36 36 H 1.09007 * 109.46859 * 299.99644 * 13 12 10 37 37 H 1.08999 * 109.47419 * 59.99905 * 13 12 10 38 38 H 1.09003 * 109.47140 * 299.99945 * 14 13 12 39 39 H 1.08999 * 109.47180 * 59.99639 * 14 13 12 40 40 H 1.09003 * 109.46944 * 300.00133 * 15 14 13 41 41 H 1.08999 * 109.47152 * 59.99691 * 15 14 13 42 42 H 0.96997 * 119.99817 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.47747 * 179.97438 * 24 2 1 44 44 H 1.09002 * 109.47103 * 300.00247 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4401 -2.1638 1.2491 9 6 2.0396 -2.8854 2.4983 10 6 1.4382 -4.2658 2.5614 11 8 0.6796 -4.6345 1.6962 12 8 1.7454 -5.0858 3.5787 13 6 1.1287 -6.4004 3.5750 14 6 1.5942 -7.1855 4.8029 15 6 0.9440 -8.5705 4.7994 16 6 1.4029 -9.3441 6.0085 17 1 2.0894 -8.8928 6.7096 18 6 0.9456 -10.6274 6.2202 19 7 0.1093 -11.1767 5.3668 20 14 1.5152 -11.5866 7.7187 21 1 2.4482 -10.7507 8.5161 22 1 0.3397 -11.9475 8.5514 23 1 2.2097 -12.8236 7.2800 24 6 2.0400 -0.7212 1.2491 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.6767 -0.2073 -2.1392 29 1 3.1300 -0.7208 -1.2496 30 1 1.8937 -2.6776 -2.1391 31 1 0.4400 -2.1637 -1.2493 32 1 3.1301 -2.8849 -0.0002 33 1 1.6771 -3.9128 -0.0004 34 1 3.1258 -2.9641 2.4548 35 1 1.7513 -2.3226 3.3861 36 1 0.0443 -6.2931 3.6025 37 1 1.4182 -6.9350 2.6703 38 1 2.6786 -7.2928 4.7760 39 1 1.3044 -6.6508 5.7074 40 1 -0.1404 -8.4628 4.8266 41 1 1.2334 -9.1055 3.8949 42 1 -0.2126 -12.0794 5.5160 43 1 3.1300 -0.7217 1.2489 44 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750245657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:22 Heat of formation + Delta-G solvation = -155.531594 kcal Electronic energy + Delta-G solvation = -20383.256807 eV Core-core repulsion = 17297.923204 eV Total energy + Delta-G solvation = -3085.333603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67327 -39.97874 -37.79421 -35.93955 -34.23331 -33.64480 -32.37878 -29.49188 -28.20459 -27.57787 -25.23207 -23.19316 -22.99932 -22.17585 -21.25329 -19.58413 -18.72988 -18.32403 -17.73384 -17.18257 -16.53545 -16.43373 -15.96442 -15.37400 -15.29579 -14.73096 -14.51594 -14.27751 -13.97428 -13.77636 -13.62017 -13.55856 -13.06986 -12.86679 -12.69776 -12.52895 -12.49887 -12.35623 -12.29237 -12.04740 -11.85083 -11.77754 -11.72132 -11.45776 -11.40878 -11.25627 -11.08395 -10.87375 -10.67502 -10.59470 -8.23154 -6.34893 1.22435 1.40897 1.41232 1.54906 1.73204 2.40693 3.10767 3.60772 3.70394 3.78968 3.95284 3.98499 4.06235 4.18826 4.28062 4.36830 4.41280 4.51209 4.54026 4.58832 4.65758 4.72865 4.78393 4.84676 4.87501 4.89982 5.02694 5.06296 5.07119 5.15422 5.18741 5.31628 5.32840 5.42837 5.45232 5.49467 5.54384 5.61869 5.62402 5.69054 5.78748 6.17813 6.76453 6.81914 7.34870 8.89425 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.055511 B = 0.002615 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.280809 B =10705.717208 C =10876.520849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.074 4.074 8 H 0.065 0.935 9 C -0.105 4.105 10 C 0.450 3.550 11 O -0.539 6.539 12 O -0.362 6.362 13 C 0.078 3.922 14 C -0.094 4.094 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.065 0.935 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.104 4.104 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.067 0.933 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.265 0.735 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 25.209 -10.083 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 H 0.102 0.898 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.093 4.093 8 H 0.084 0.916 9 C -0.142 4.142 10 C 0.295 3.705 11 O -0.429 6.429 12 O -0.279 6.279 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.141 4.141 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.290 24.918 -10.356 27.498 hybrid contribution -0.391 -1.335 0.339 1.432 sum 4.899 23.583 -10.018 26.087 Atomic orbital electron populations 1.21962 0.95854 1.01482 1.01792 1.21096 0.95553 0.99553 0.94591 0.89833 1.21566 1.00813 0.94600 0.97894 1.21519 1.00527 0.96409 0.97178 1.21701 1.00561 0.99046 0.94743 1.21029 1.00636 0.95366 0.92234 0.91611 1.21691 1.03475 0.86665 1.02345 1.24738 0.78693 0.88978 0.78067 1.90623 1.35694 1.77117 1.39469 1.86499 1.66709 1.26898 1.47763 1.23063 0.97030 0.79507 0.99936 1.21450 1.01008 0.95121 0.95534 1.18941 0.94867 0.91250 0.96139 1.21652 1.27685 0.99626 1.09029 0.91629 1.26035 0.95017 0.98954 1.00031 1.70108 1.33558 1.15588 1.38236 0.85318 0.78317 0.78268 0.78656 1.18304 1.20360 1.20357 1.21594 1.01417 0.92684 0.98415 0.92391 0.93398 0.92581 0.91665 0.91356 0.92391 0.92729 0.91469 0.93473 0.85640 0.85387 0.92242 0.92260 0.91490 0.91477 0.98592 0.98602 0.92659 0.90414 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.50 71.98 0.61 -1.46 16 2 C -0.09 -1.06 3.19 -10.79 -0.03 -1.09 16 3 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.44 5.45 30.60 0.17 -1.27 16 5 C -0.12 -2.07 5.65 30.60 0.17 -1.90 16 6 C -0.12 -2.45 4.94 30.59 0.15 -2.30 16 7 C -0.07 -1.30 1.56 -10.79 -0.02 -1.31 16 8 H 0.07 1.40 6.24 -2.39 -0.01 1.38 16 9 C -0.10 -1.87 5.29 29.85 0.16 -1.71 16 10 C 0.45 13.05 7.67 71.24 0.55 13.60 16 11 O -0.54 -18.98 13.72 21.97 0.30 -18.68 16 12 O -0.36 -11.90 10.22 -51.41 -0.53 -12.42 16 13 C 0.08 2.98 5.47 71.98 0.39 3.37 16 14 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 15 C 0.03 1.35 4.97 29.85 0.15 1.50 16 16 C -0.54 -30.95 9.11 25.60 0.23 -30.71 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 19 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 20 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 C -0.10 -1.22 4.73 30.59 0.14 -1.07 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.81 4.81 -2.39 -0.01 0.80 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.06 6.43 -2.39 -0.02 1.04 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.26 5.96 -2.39 -0.01 1.25 16 34 H 0.13 1.73 8.14 -2.39 -0.02 1.72 16 35 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 2.32 8.13 -2.38 -0.02 2.30 16 37 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -67.34 343.50 6.34 -61.01 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.94 Total: 8.78 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 3.31 Total: -27.84 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.22 Total: -31.11 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.34 6.34 -61.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750245657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.525 kcal (2) G-P(sol) polarization free energy of solvation -67.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds