Wall clock time and date at job start Mon Mar 30 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 8 8 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 7 6 5 10 10 C 1.50708 * 109.47329 * 65.00103 * 9 7 6 11 11 O 1.20825 * 119.99494 * 0.02562 * 10 9 7 12 12 O 1.34229 * 120.00179 * 179.97438 * 10 9 7 13 13 C 1.45193 * 116.99587 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46953 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47116 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00125 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99827 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47264 * 59.99798 * 20 18 16 22 22 H 1.48495 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46663 * 299.99911 * 20 18 16 24 24 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 25 25 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 27 27 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 29 29 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 31 31 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 32 32 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47611 * 59.99933 * 6 5 4 34 34 H 1.09000 * 109.47325 * 185.00280 * 9 7 6 35 35 H 1.09006 * 109.47500 * 305.00368 * 9 7 6 36 36 H 1.09004 * 109.47476 * 299.99655 * 13 12 10 37 37 H 1.08999 * 109.47706 * 60.00252 * 13 12 10 38 38 H 1.09004 * 109.46706 * 299.99434 * 14 13 12 39 39 H 1.08995 * 109.47403 * 59.99773 * 14 13 12 40 40 H 1.08994 * 109.47412 * 299.99330 * 15 14 13 41 41 H 1.08999 * 109.47626 * 59.99794 * 15 14 13 42 42 H 0.96999 * 120.00283 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47153 * 299.99641 * 24 2 1 44 44 H 1.08996 * 109.46952 * 59.99813 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0805 -1.4420 2.4978 10 6 5.5824 -1.3358 2.5613 11 8 6.1832 -0.7435 1.6964 12 8 6.2526 -1.8985 3.5792 13 6 7.6975 -1.7559 3.5758 14 6 8.2821 -2.4571 4.8036 15 6 9.8046 -2.3064 4.8004 16 6 10.3803 -2.9965 6.0101 17 1 9.7257 -3.4934 6.7109 18 6 11.7428 -2.9945 6.2217 19 7 12.5399 -2.3900 5.3681 20 14 12.4564 -3.8506 7.7208 21 1 12.1012 -5.2920 7.6836 22 1 13.9342 -3.7053 7.7171 23 1 11.9010 -3.2355 8.9531 24 6 2.0400 -0.7214 1.2491 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6765 -1.7488 -1.2495 29 1 1.6765 -0.2072 -2.1393 30 1 3.9331 -1.2340 -2.1400 31 1 3.9329 0.3071 -1.2499 32 1 5.1704 -1.4417 -0.0010 33 1 3.7174 -2.4695 -0.0005 34 1 3.6459 -0.9826 3.3856 35 1 3.7921 -2.4923 2.4541 36 1 8.1052 -2.2078 2.6714 37 1 7.9584 -0.6979 3.6026 38 1 7.8746 -2.0056 5.7082 39 1 8.0213 -3.5151 4.7764 40 1 10.2125 -2.7575 3.8959 41 1 10.0651 -1.2483 4.8279 42 1 13.4984 -2.3889 5.5167 43 1 1.6768 -0.2076 2.1392 44 1 1.6767 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750245659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:25 Heat of formation + Delta-G solvation = -144.882741 kcal Electronic energy + Delta-G solvation = -20190.758252 eV Core-core repulsion = 17105.886417 eV Total energy + Delta-G solvation = -3084.871834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46370 -38.93719 -36.44921 -33.97833 -33.64254 -32.07776 -31.65003 -28.26350 -26.78330 -26.50737 -23.41991 -22.29577 -21.58668 -20.40839 -20.03617 -19.89468 -17.37309 -16.51051 -16.40415 -15.80792 -15.48525 -14.79899 -14.62951 -14.47558 -14.20193 -13.93039 -13.60654 -12.91810 -12.65664 -12.60032 -12.25138 -12.16769 -12.08337 -11.83615 -11.72265 -11.52409 -11.19963 -11.03219 -10.94869 -10.70737 -10.64380 -10.61349 -10.58082 -10.33853 -10.22038 -9.97457 -9.70287 -9.46719 -9.16891 -8.38244 -6.03086 -4.06213 2.40588 2.95550 3.32634 3.36881 3.39539 4.35036 4.42276 4.43060 4.49698 4.78759 4.80245 5.00304 5.05796 5.19864 5.23763 5.26970 5.32659 5.35156 5.41881 5.43906 5.53462 5.57849 5.58965 5.60650 5.65726 5.74260 5.82139 5.97765 6.00691 6.02642 6.04824 6.10698 6.26105 6.31078 6.55261 6.57323 6.89377 7.00663 7.60495 7.71884 7.94957 8.00719 8.36473 8.99819 9.57905 11.08336 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.059254 B = 0.002531 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.428953 B =11060.722917 C =11353.291137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.075 4.075 8 H 0.080 0.920 9 C -0.112 4.112 10 C 0.455 3.545 11 O -0.510 6.510 12 O -0.361 6.361 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.108 4.108 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.899 3.548 -11.098 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.094 4.094 8 H 0.098 0.902 9 C -0.150 4.150 10 C 0.298 3.702 11 O -0.399 6.399 12 O -0.277 6.277 13 C -0.005 4.005 14 C -0.147 4.147 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.484 3.755 -11.371 26.361 hybrid contribution 0.669 -0.390 0.748 1.077 sum -22.815 3.365 -10.623 25.391 Atomic orbital electron populations 1.21833 0.95334 1.01735 1.01556 1.21121 0.95204 0.99768 0.94965 0.91198 1.21617 0.95847 1.00492 0.97231 1.21493 0.95131 1.01005 0.97857 1.21744 1.02362 0.98457 0.93505 1.21010 0.94925 1.00416 0.93035 0.90189 1.21486 0.88263 1.04228 1.00991 1.23665 0.91590 0.75593 0.79323 1.90621 1.70706 1.39923 1.38641 1.86502 1.24344 1.70301 1.46590 1.23470 0.73954 1.01681 1.01366 1.21759 0.99199 0.99513 0.94192 1.19046 0.86987 0.97625 0.97653 1.21141 0.91936 1.34655 1.08292 0.92487 1.25036 0.97239 0.95545 0.96684 1.69954 1.03929 1.43355 1.36143 0.86597 0.77839 0.80089 0.83122 1.20181 1.21266 1.20173 1.21651 0.94261 1.00964 0.97712 0.92739 0.92734 0.92819 0.92085 0.92307 0.92137 0.91963 0.90055 0.92438 0.87874 0.87919 0.91620 0.91610 0.92197 0.92193 0.96263 0.96261 0.92834 0.91775 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.66 2.72 -90.62 -0.25 -0.91 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 6 C -0.12 -1.26 4.94 -26.73 -0.13 -1.39 16 7 C -0.08 -0.72 1.84 -90.60 -0.17 -0.88 16 8 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 9 C -0.11 -1.12 5.28 -27.88 -0.15 -1.27 16 10 C 0.46 6.74 7.68 36.01 0.28 7.01 16 11 O -0.51 -8.80 13.72 -18.75 -0.26 -9.06 16 12 O -0.36 -6.07 10.22 -39.26 -0.40 -6.47 16 13 C 0.07 1.28 5.47 37.16 0.20 1.49 16 14 C -0.11 -2.30 5.53 -26.73 -0.15 -2.44 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 20 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.11 -0.80 4.49 -26.71 -0.12 -0.92 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -30.84 350.54 -8.94 -39.78 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -8.30 Total: -4.72 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.99 Total: -15.19 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.66 Total: -15.53 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.84 -8.94 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750245659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.103 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds