Wall clock time and date at job start Mon Mar 30 2020 01:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 8 8 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 7 6 5 10 10 C 1.50708 * 109.47329 * 65.00103 * 9 7 6 11 11 O 1.20825 * 119.99494 * 0.02562 * 10 9 7 12 12 O 1.34229 * 120.00179 * 179.97438 * 10 9 7 13 13 C 1.45193 * 116.99587 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46953 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47116 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00125 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99827 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47264 * 59.99798 * 20 18 16 22 22 H 1.48495 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46663 * 299.99911 * 20 18 16 24 24 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 25 25 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 27 27 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 29 29 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 31 31 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 32 32 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47611 * 59.99933 * 6 5 4 34 34 H 1.09000 * 109.47325 * 185.00280 * 9 7 6 35 35 H 1.09006 * 109.47500 * 305.00368 * 9 7 6 36 36 H 1.09004 * 109.47476 * 299.99655 * 13 12 10 37 37 H 1.08999 * 109.47706 * 60.00252 * 13 12 10 38 38 H 1.09004 * 109.46706 * 299.99434 * 14 13 12 39 39 H 1.08995 * 109.47403 * 59.99773 * 14 13 12 40 40 H 1.08994 * 109.47412 * 299.99330 * 15 14 13 41 41 H 1.08999 * 109.47626 * 59.99794 * 15 14 13 42 42 H 0.96999 * 120.00283 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47153 * 299.99641 * 24 2 1 44 44 H 1.08996 * 109.46952 * 59.99813 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0805 -1.4420 2.4978 10 6 5.5824 -1.3358 2.5613 11 8 6.1832 -0.7435 1.6964 12 8 6.2526 -1.8985 3.5792 13 6 7.6975 -1.7559 3.5758 14 6 8.2821 -2.4571 4.8036 15 6 9.8046 -2.3064 4.8004 16 6 10.3803 -2.9965 6.0101 17 1 9.7257 -3.4934 6.7109 18 6 11.7428 -2.9945 6.2217 19 7 12.5399 -2.3900 5.3681 20 14 12.4564 -3.8506 7.7208 21 1 12.1012 -5.2920 7.6836 22 1 13.9342 -3.7053 7.7171 23 1 11.9010 -3.2355 8.9531 24 6 2.0400 -0.7214 1.2491 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6765 -1.7488 -1.2495 29 1 1.6765 -0.2072 -2.1393 30 1 3.9331 -1.2340 -2.1400 31 1 3.9329 0.3071 -1.2499 32 1 5.1704 -1.4417 -0.0010 33 1 3.7174 -2.4695 -0.0005 34 1 3.6459 -0.9826 3.3856 35 1 3.7921 -2.4923 2.4541 36 1 8.1052 -2.2078 2.6714 37 1 7.9584 -0.6979 3.6026 38 1 7.8746 -2.0056 5.7082 39 1 8.0213 -3.5151 4.7764 40 1 10.2125 -2.7575 3.8959 41 1 10.0651 -1.2483 4.8279 42 1 13.4984 -2.3889 5.5167 43 1 1.6768 -0.2076 2.1392 44 1 1.6767 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750245659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:24 Heat of formation + Delta-G solvation = -159.576606 kcal Electronic energy + Delta-G solvation = -20191.395426 eV Core-core repulsion = 17105.886417 eV Total energy + Delta-G solvation = -3085.509008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64853 -39.74357 -37.78328 -35.93752 -34.41825 -33.67627 -32.71188 -29.51861 -28.25109 -27.15520 -25.22967 -23.11892 -22.53425 -22.17524 -20.95509 -20.66917 -18.76272 -18.37161 -17.74711 -17.16417 -16.50588 -16.14643 -15.95289 -15.37459 -15.14851 -14.83976 -14.63126 -14.27773 -13.95296 -13.83483 -13.68330 -13.25450 -13.12377 -12.82113 -12.71623 -12.61171 -12.51247 -12.38203 -12.17649 -12.05037 -11.87718 -11.77872 -11.69174 -11.47667 -11.40913 -11.28755 -11.27939 -10.88169 -10.77073 -10.57836 -8.22519 -6.34465 1.21983 1.40936 1.44545 1.52374 1.72625 2.41065 3.11086 3.60118 3.66977 3.77144 3.96313 3.98686 4.06181 4.14530 4.30042 4.32625 4.40536 4.48016 4.53506 4.60957 4.70450 4.75427 4.78525 4.84331 4.85825 4.91181 4.97810 5.05773 5.06610 5.12573 5.21581 5.30249 5.32365 5.43995 5.44485 5.48646 5.50038 5.61483 5.61981 5.66879 5.78727 6.17947 6.76044 6.81779 7.35051 8.89552 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.059254 B = 0.002531 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.428953 B =11060.722917 C =11353.291137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.072 4.072 8 H 0.061 0.939 9 C -0.104 4.104 10 C 0.450 3.550 11 O -0.539 6.539 12 O -0.362 6.362 13 C 0.078 3.922 14 C -0.094 4.094 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.066 0.934 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.265 1.265 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.067 0.933 40 H -0.005 1.005 41 H -0.005 1.005 42 H 0.265 0.735 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.183 2.625 -10.058 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.091 4.091 8 H 0.079 0.921 9 C -0.141 4.141 10 C 0.295 3.705 11 O -0.429 6.429 12 O -0.278 6.278 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.012 4.012 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.798 2.832 -10.334 27.935 hybrid contribution 1.366 -0.062 0.340 1.409 sum -24.432 2.771 -9.995 26.542 Atomic orbital electron populations 1.21796 0.94138 1.02210 1.01965 1.21126 0.96134 0.99218 0.94690 0.92047 1.21589 0.94264 1.01073 0.97822 1.21484 0.96573 1.00104 0.97334 1.21712 1.00302 0.99434 0.94673 1.20990 0.96622 0.99086 0.92377 0.92065 1.21680 0.84119 1.06035 1.02252 1.24733 0.93299 0.74365 0.78069 1.90625 1.71630 1.41166 1.39516 1.86496 1.22752 1.70888 1.47704 1.23064 0.75688 1.00837 0.99951 1.21451 0.95828 1.00293 0.95537 1.18933 0.90483 0.95628 0.96115 1.21599 0.92648 1.34875 1.09086 0.91603 1.26044 0.97753 0.96203 1.00053 1.70096 1.04314 1.44731 1.38280 0.85416 0.76904 0.79201 0.79027 1.18990 1.20937 1.18974 1.21622 0.92067 1.01925 0.98338 0.92193 0.92267 0.92562 0.91397 0.91684 0.92124 0.93139 0.93375 0.91361 0.85322 0.85567 0.92261 0.92237 0.91468 0.91473 0.98625 0.98619 0.92661 0.90538 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 71.98 0.66 -0.72 16 2 C -0.09 -1.15 2.72 -10.79 -0.03 -1.18 16 3 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.46 5.20 30.60 0.16 -1.30 16 5 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 6 C -0.12 -2.48 4.94 30.59 0.15 -2.32 16 7 C -0.07 -1.27 1.84 -10.78 -0.02 -1.29 16 8 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 9 C -0.10 -1.85 5.28 29.85 0.16 -1.69 16 10 C 0.45 13.05 7.68 71.24 0.55 13.60 16 11 O -0.54 -19.03 13.72 21.97 0.30 -18.73 16 12 O -0.36 -11.88 10.22 -51.41 -0.53 -12.40 16 13 C 0.08 2.98 5.47 71.98 0.39 3.37 16 14 C -0.09 -3.94 5.53 30.60 0.17 -3.78 16 15 C 0.03 1.37 4.97 29.85 0.15 1.52 16 16 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 19 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 20 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 C -0.10 -1.23 4.49 30.61 0.14 -1.10 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.29 5.96 -2.39 -0.01 1.27 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.06 2.31 8.13 -2.38 -0.02 2.29 16 37 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -67.23 350.54 6.36 -60.87 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.93 Total: 8.42 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 3.35 Total: -27.28 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.08 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.22 Total: -31.13 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.23 6.36 -60.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750245659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.707 kcal (2) G-P(sol) polarization free energy of solvation -67.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds