Wall clock time and date at job start Mon Mar 30 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47393 * 2 1 4 4 C 1.53005 * 109.47126 * 120.00369 * 2 1 3 5 5 C 1.53002 * 109.46734 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47367 * 299.99897 * 5 4 2 7 7 C 1.52995 * 109.47408 * 60.00579 * 6 5 4 8 8 H 1.09002 * 109.47346 * 59.99173 * 7 6 5 9 9 C 1.52997 * 109.47317 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.46773 * 294.99344 * 9 7 6 11 11 O 1.20830 * 120.00289 * 0.02562 * 10 9 7 12 12 O 1.34231 * 120.00053 * 180.02562 * 10 9 7 13 13 C 1.45206 * 117.00207 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47531 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.53005 * 109.46738 * 239.99888 * 2 1 3 25 25 H 1.08993 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46574 * 300.00025 * 1 2 3 27 27 H 1.08995 * 109.46833 * 59.99735 * 1 2 3 28 28 H 1.08994 * 109.46709 * 299.99788 * 4 2 1 29 29 H 1.09000 * 109.46781 * 59.99562 * 4 2 1 30 30 H 1.08999 * 109.46940 * 60.00756 * 5 4 2 31 31 H 1.09004 * 109.46682 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47542 * 299.99872 * 6 5 4 33 33 H 1.09006 * 109.46994 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47062 * 174.99988 * 9 7 6 35 35 H 1.08992 * 109.47794 * 54.99371 * 9 7 6 36 36 H 1.09002 * 109.47266 * 59.99544 * 13 12 10 37 37 H 1.09001 * 109.46670 * 299.99765 * 13 12 10 38 38 H 1.09002 * 109.47103 * 59.99585 * 14 13 12 39 39 H 1.08998 * 109.46862 * 300.00397 * 14 13 12 40 40 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 41 41 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 42 42 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.47163 * 60.00543 * 24 2 1 44 44 H 1.08993 * 109.47159 * 300.00076 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5701 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0004 7 6 3.5696 -0.7221 -1.2496 8 1 3.9332 0.3055 -1.2497 9 6 4.0786 -1.4440 -2.4988 10 6 5.5805 -1.3386 -2.5629 11 8 6.1822 -0.7472 -1.6979 12 8 6.2500 -1.9017 -3.5810 13 6 7.6952 -1.7610 -3.5777 14 6 8.2788 -2.4625 -4.8057 15 6 9.8015 -2.3136 -4.8026 16 6 10.3764 -3.0051 -6.0118 17 1 9.7212 -3.5009 -6.7128 18 6 11.7388 -3.0040 -6.2239 19 7 12.5366 -2.4000 -5.3706 20 14 12.4512 -3.8606 -7.7232 21 1 11.3509 -4.4590 -8.5210 22 1 13.1850 -2.8734 -8.5553 23 1 13.3842 -4.9299 -7.2857 24 6 2.0399 -0.7213 -1.2493 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6767 -0.2075 2.1392 29 1 1.6766 -1.7490 1.2492 30 1 3.9337 0.3057 1.2488 31 1 3.9334 -1.2354 2.1390 32 1 3.7159 -2.4709 -0.0003 33 1 5.1696 -1.4441 -0.0004 34 1 3.6440 -0.9843 -3.3865 35 1 3.7896 -2.4940 -2.4549 36 1 8.1023 -2.2135 -2.6735 37 1 7.9572 -0.7032 -3.6043 38 1 7.8718 -2.0103 -5.7101 39 1 8.0167 -3.5201 -4.7787 40 1 10.2089 -2.7655 -3.8981 41 1 10.0632 -1.2558 -4.8298 42 1 13.4951 -2.3995 -5.5197 43 1 1.6766 -0.2074 -2.1393 44 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750245661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:28 Heat of formation + Delta-G solvation = -144.976206 kcal Electronic energy + Delta-G solvation = -20191.217803 eV Core-core repulsion = 17106.341916 eV Total energy + Delta-G solvation = -3084.875887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46418 -38.93899 -36.44843 -33.98085 -33.64413 -32.07874 -31.65241 -28.26617 -26.78576 -26.50831 -23.42283 -22.29564 -21.58815 -20.40978 -20.03618 -19.89594 -17.37319 -16.51335 -16.40479 -15.81201 -15.48658 -14.79943 -14.62907 -14.46879 -14.20200 -13.93175 -13.60759 -12.92227 -12.65710 -12.60130 -12.25293 -12.17765 -12.08430 -11.83420 -11.72178 -11.52489 -11.19862 -11.03282 -10.98414 -10.68952 -10.64442 -10.61008 -10.55831 -10.34557 -10.21957 -9.97496 -9.70719 -9.47408 -9.14412 -8.39189 -6.03662 -4.06574 2.40525 2.95497 3.29967 3.37347 3.41813 4.34947 4.42229 4.42896 4.49715 4.78744 4.80196 5.00226 5.05755 5.19876 5.23765 5.26974 5.32361 5.35256 5.41892 5.43939 5.53399 5.57868 5.58939 5.60588 5.65707 5.74248 5.82120 5.97730 6.00694 6.02600 6.04798 6.10690 6.26099 6.31046 6.55152 6.57283 6.89310 7.00596 7.60709 7.71616 7.94769 8.00644 8.36254 8.99993 9.57728 11.07853 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.059253 B = 0.002531 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.438277 B =11060.205809 C =11352.840446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.075 4.075 8 H 0.080 0.920 9 C -0.112 4.112 10 C 0.455 3.545 11 O -0.510 6.510 12 O -0.361 6.361 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.023 3.977 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.108 4.108 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.064 0.936 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.926 3.565 11.099 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.094 4.094 8 H 0.098 0.902 9 C -0.150 4.150 10 C 0.298 3.702 11 O -0.399 6.399 12 O -0.277 6.277 13 C -0.005 4.005 14 C -0.147 4.147 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.520 3.768 11.368 26.393 hybrid contribution 0.690 -0.379 -0.736 1.077 sum -22.830 3.389 10.632 25.411 Atomic orbital electron populations 1.21831 0.95332 1.01736 1.01556 1.21121 0.95205 0.99766 0.94960 0.91198 1.21618 0.95848 1.00490 0.97233 1.21494 0.95132 1.01003 0.97857 1.21744 1.02368 0.98453 0.93502 1.20995 0.94941 1.00414 0.93038 0.90195 1.21481 0.88267 1.04227 1.00986 1.23665 0.91596 0.75586 0.79323 1.90623 1.70657 1.39969 1.38645 1.86504 1.24354 1.70303 1.46583 1.23469 0.73946 1.01684 1.01365 1.21756 0.99199 0.99516 0.94191 1.19059 0.86997 0.97635 0.97693 1.21214 0.91938 1.34457 1.08249 0.92376 1.25041 0.97261 0.95563 0.96698 1.69977 1.03800 1.43484 1.36111 0.86487 0.79097 0.79331 0.82800 1.19669 1.20975 1.20970 1.21638 0.94271 1.00966 0.97715 0.92737 0.92826 0.92726 0.92301 0.92090 0.91965 0.92137 0.92438 0.90050 0.87874 0.87916 0.91619 0.91612 0.92196 0.92190 0.96252 0.96250 0.92951 0.91773 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.66 2.72 -90.61 -0.25 -0.91 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 6 C -0.12 -1.26 4.94 -26.74 -0.13 -1.39 16 7 C -0.08 -0.72 1.84 -90.64 -0.17 -0.88 16 8 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 9 C -0.11 -1.12 5.28 -27.89 -0.15 -1.27 16 10 C 0.46 6.73 7.68 36.00 0.28 7.01 16 11 O -0.51 -8.80 13.72 -18.75 -0.26 -9.06 16 12 O -0.36 -6.07 10.22 -39.26 -0.40 -6.47 16 13 C 0.07 1.28 5.47 37.15 0.20 1.49 16 14 C -0.11 -2.29 5.53 -26.74 -0.15 -2.44 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 20 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.11 -0.80 4.48 -26.74 -0.12 -0.92 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -30.89 350.54 -8.94 -39.83 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -8.30 Total: -4.79 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.99 Total: -15.18 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.66 Total: -15.53 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.89 -8.94 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750245661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.147 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds