Wall clock time and date at job start Mon Mar 30 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47393 * 2 1 4 4 C 1.53005 * 109.47126 * 120.00369 * 2 1 3 5 5 C 1.53002 * 109.46734 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47367 * 299.99897 * 5 4 2 7 7 C 1.52995 * 109.47408 * 60.00579 * 6 5 4 8 8 H 1.09002 * 109.47346 * 59.99173 * 7 6 5 9 9 C 1.52997 * 109.47317 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.46773 * 294.99344 * 9 7 6 11 11 O 1.20830 * 120.00289 * 0.02562 * 10 9 7 12 12 O 1.34231 * 120.00053 * 180.02562 * 10 9 7 13 13 C 1.45206 * 117.00207 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47531 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.53005 * 109.46738 * 239.99888 * 2 1 3 25 25 H 1.08993 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46574 * 300.00025 * 1 2 3 27 27 H 1.08995 * 109.46833 * 59.99735 * 1 2 3 28 28 H 1.08994 * 109.46709 * 299.99788 * 4 2 1 29 29 H 1.09000 * 109.46781 * 59.99562 * 4 2 1 30 30 H 1.08999 * 109.46940 * 60.00756 * 5 4 2 31 31 H 1.09004 * 109.46682 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47542 * 299.99872 * 6 5 4 33 33 H 1.09006 * 109.46994 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47062 * 174.99988 * 9 7 6 35 35 H 1.08992 * 109.47794 * 54.99371 * 9 7 6 36 36 H 1.09002 * 109.47266 * 59.99544 * 13 12 10 37 37 H 1.09001 * 109.46670 * 299.99765 * 13 12 10 38 38 H 1.09002 * 109.47103 * 59.99585 * 14 13 12 39 39 H 1.08998 * 109.46862 * 300.00397 * 14 13 12 40 40 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 41 41 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 42 42 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.47163 * 60.00543 * 24 2 1 44 44 H 1.08993 * 109.47159 * 300.00076 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5701 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0004 7 6 3.5696 -0.7221 -1.2496 8 1 3.9332 0.3055 -1.2497 9 6 4.0786 -1.4440 -2.4988 10 6 5.5805 -1.3386 -2.5629 11 8 6.1822 -0.7472 -1.6979 12 8 6.2500 -1.9017 -3.5810 13 6 7.6952 -1.7610 -3.5777 14 6 8.2788 -2.4625 -4.8057 15 6 9.8015 -2.3136 -4.8026 16 6 10.3764 -3.0051 -6.0118 17 1 9.7212 -3.5009 -6.7128 18 6 11.7388 -3.0040 -6.2239 19 7 12.5366 -2.4000 -5.3706 20 14 12.4512 -3.8606 -7.7232 21 1 11.3509 -4.4590 -8.5210 22 1 13.1850 -2.8734 -8.5553 23 1 13.3842 -4.9299 -7.2857 24 6 2.0399 -0.7213 -1.2493 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6767 -0.2075 2.1392 29 1 1.6766 -1.7490 1.2492 30 1 3.9337 0.3057 1.2488 31 1 3.9334 -1.2354 2.1390 32 1 3.7159 -2.4709 -0.0003 33 1 5.1696 -1.4441 -0.0004 34 1 3.6440 -0.9843 -3.3865 35 1 3.7896 -2.4940 -2.4549 36 1 8.1023 -2.2135 -2.6735 37 1 7.9572 -0.7032 -3.6043 38 1 7.8718 -2.0103 -5.7101 39 1 8.0167 -3.5201 -4.7787 40 1 10.2089 -2.7655 -3.8981 41 1 10.0632 -1.2558 -4.8298 42 1 13.4951 -2.3995 -5.5197 43 1 1.6766 -0.2074 -2.1393 44 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750245661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:27 Heat of formation + Delta-G solvation = -159.709123 kcal Electronic energy + Delta-G solvation = -20191.856670 eV Core-core repulsion = 17106.341916 eV Total energy + Delta-G solvation = -3085.514754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64793 -39.74561 -37.78209 -35.93984 -34.41954 -33.67809 -32.71254 -29.52119 -28.25436 -27.15553 -25.23292 -23.11825 -22.53496 -22.17592 -20.95644 -20.66836 -18.76566 -18.37569 -17.74631 -17.16575 -16.49999 -16.14757 -15.95298 -15.37465 -15.14884 -14.84226 -14.63709 -14.28753 -13.94897 -13.83397 -13.68396 -13.25429 -13.12507 -12.86778 -12.71743 -12.60762 -12.50043 -12.35027 -12.17611 -12.06189 -11.87598 -11.77949 -11.69255 -11.47950 -11.41007 -11.28426 -11.25284 -10.88123 -10.77137 -10.59428 -8.23093 -6.34775 1.21977 1.40924 1.41274 1.54949 1.72645 2.40723 3.10767 3.60138 3.66913 3.77101 3.96335 3.98684 4.06244 4.14565 4.30020 4.32601 4.40557 4.48018 4.53595 4.61021 4.70480 4.75494 4.78494 4.84328 4.85833 4.91201 4.97808 5.05799 5.06586 5.12564 5.21580 5.30222 5.32396 5.44060 5.44651 5.48650 5.50107 5.61538 5.61862 5.66881 5.78763 6.17816 6.76079 6.81912 7.34876 8.89431 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.059253 B = 0.002531 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.438277 B =11060.205809 C =11352.840446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.072 4.072 8 H 0.061 0.939 9 C -0.104 4.104 10 C 0.450 3.550 11 O -0.539 6.539 12 O -0.362 6.362 13 C 0.078 3.922 14 C -0.094 4.094 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.066 0.934 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.067 0.933 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.265 0.735 43 H 0.076 0.924 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.194 2.656 10.076 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.091 4.091 8 H 0.079 0.921 9 C -0.141 4.141 10 C 0.295 3.705 11 O -0.429 6.429 12 O -0.278 6.278 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.816 2.860 10.349 27.960 hybrid contribution 1.385 -0.055 -0.333 1.425 sum -24.432 2.806 10.016 26.553 Atomic orbital electron populations 1.21795 0.94136 1.02209 1.01966 1.21127 0.96135 0.99216 0.94684 0.92044 1.21590 0.94266 1.01070 0.97825 1.21484 0.96574 1.00103 0.97334 1.21712 1.00309 0.99430 0.94670 1.20975 0.96634 0.99085 0.92381 0.92069 1.21675 0.84127 1.06033 1.02246 1.24732 0.93304 0.74357 0.78070 1.90627 1.71583 1.41211 1.39520 1.86498 1.22763 1.70892 1.47696 1.23064 0.75678 1.00842 0.99948 1.21449 0.95835 1.00296 0.95536 1.18944 0.90486 0.95641 0.96146 1.21652 0.92624 1.34677 1.09020 0.91616 1.26044 0.97775 0.96229 1.00055 1.70111 1.04266 1.44833 1.38245 0.85311 0.78423 0.78134 0.78643 1.18302 1.20378 1.20369 1.21609 0.92083 1.01925 0.98342 0.92194 0.92569 0.92258 0.91677 0.91404 0.93140 0.92124 0.91363 0.93369 0.85322 0.85566 0.92255 0.92235 0.91472 0.91475 0.98603 0.98594 0.92670 0.90535 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 71.98 0.66 -0.71 16 2 C -0.09 -1.15 2.72 -10.79 -0.03 -1.18 16 3 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.46 5.20 30.60 0.16 -1.30 16 5 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 6 C -0.12 -2.48 4.94 30.59 0.15 -2.32 16 7 C -0.07 -1.27 1.84 -10.81 -0.02 -1.29 16 8 H 0.06 1.31 7.96 -2.39 -0.02 1.30 16 9 C -0.10 -1.85 5.28 29.85 0.16 -1.69 16 10 C 0.45 13.05 7.68 71.24 0.55 13.60 16 11 O -0.54 -19.02 13.72 21.95 0.30 -18.72 16 12 O -0.36 -11.87 10.22 -51.42 -0.53 -12.40 16 13 C 0.08 2.98 5.47 71.98 0.39 3.37 16 14 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 15 C 0.03 1.34 4.97 29.85 0.15 1.49 16 16 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 19 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 20 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 C -0.10 -1.23 4.48 30.59 0.14 -1.10 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.29 5.96 -2.38 -0.01 1.27 16 34 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 37 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -67.29 350.54 6.36 -60.93 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.93 Total: 8.19 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 3.35 Total: -27.21 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.22 Total: -31.12 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -67.29 6.36 -60.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750245661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.783 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds