Wall clock time and date at job start Mon Mar 30 2020 00:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00076 * 2 1 4 4 H 1.48503 * 109.46941 * 269.99567 * 3 2 1 5 5 H 1.48505 * 109.47189 * 29.99298 * 3 2 1 6 6 H 1.48496 * 109.47376 * 149.99874 * 3 2 1 7 7 C 1.37880 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47222 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.47231 * 180.02562 * 11 10 9 13 13 C 1.34221 * 116.99903 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00367 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00092 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47238 * 180.02562 * 15 13 12 17 17 C 1.54248 * 108.89537 * 296.39357 * 16 15 13 18 18 C 1.50550 * 108.48395 * 159.17985 * 17 16 15 19 19 C 1.54065 * 112.41724 * 94.26378 * 18 17 16 20 20 C 1.54069 * 112.81567 * 318.28180 * 19 18 17 21 21 C 1.50469 * 112.49379 * 318.27943 * 20 19 18 22 22 C 1.45538 * 108.89733 * 173.60137 * 16 15 13 23 23 H 0.97002 * 120.00025 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47248 * 59.99770 * 9 7 2 25 25 H 1.08994 * 109.47400 * 300.00101 * 9 7 2 26 26 H 1.09003 * 109.46913 * 59.99978 * 10 9 7 27 27 H 1.08993 * 109.47389 * 299.99953 * 10 9 7 28 28 H 1.08995 * 109.46885 * 60.00179 * 11 10 9 29 29 H 1.09006 * 109.46726 * 300.00547 * 11 10 9 30 30 H 1.09001 * 109.46953 * 299.99668 * 15 13 12 31 31 H 1.09000 * 109.47318 * 59.99266 * 15 13 12 32 32 H 1.09002 * 108.87282 * 54.99578 * 16 15 13 33 33 H 1.08996 * 109.62706 * 278.97594 * 17 16 15 34 34 H 1.09000 * 109.62413 * 39.55385 * 17 16 15 35 35 H 1.09004 * 108.92282 * 333.51199 * 18 17 16 36 36 H 1.09000 * 108.91601 * 215.02220 * 18 17 16 37 37 H 1.08992 * 108.81855 * 197.42042 * 19 18 17 38 38 H 1.09004 * 108.72403 * 79.07471 * 19 18 17 39 39 H 1.08997 * 108.87505 * 197.50108 * 20 19 18 40 40 H 1.08999 * 108.87916 * 79.05940 * 20 19 18 41 41 H 1.08997 * 109.63072 * 334.44531 * 21 20 19 42 42 H 1.09007 * 109.62889 * 213.86255 * 21 20 19 43 43 H 1.09000 * 108.89472 * 303.44560 * 22 16 15 44 44 H 1.09003 * 108.89567 * 62.02724 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 8 2.4238 -6.0908 0.0018 13 6 1.9107 -7.3311 0.0019 14 8 0.7129 -7.4894 0.0019 15 6 2.8287 -8.5263 0.0031 16 6 1.9954 -9.8094 0.0023 17 6 1.1778 -9.8748 1.3086 18 6 0.0176 -10.8112 1.0991 19 6 0.3306 -12.2471 1.5616 20 6 1.7478 -12.7058 1.1684 21 6 2.1218 -12.2873 -0.2277 22 6 2.8865 -10.9500 -0.1500 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8902 26 1 2.8719 -3.6043 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0452 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.4582 -8.5018 -0.8865 31 1 3.4569 -8.5011 0.8935 32 1 1.3082 -9.7830 -0.8434 33 1 1.8081 -10.2454 2.1169 34 1 0.8050 -8.8812 1.5573 35 1 -0.2350 -10.8294 0.0389 36 1 -0.8414 -10.4399 1.6579 37 1 -0.3953 -12.9264 1.1149 38 1 0.2343 -12.2941 2.6463 39 1 1.7982 -13.7925 1.2362 40 1 2.4644 -12.2772 1.8690 41 1 1.2195 -12.1589 -0.8256 42 1 2.7589 -13.0476 -0.6797 43 1 3.4695 -10.8232 -1.0622 44 1 3.5665 -10.9828 0.7012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750567624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:34 Heat of formation + Delta-G solvation = -135.761226 kcal Electronic energy + Delta-G solvation = -20383.102649 eV Core-core repulsion = 17298.626353 eV Total energy + Delta-G solvation = -3084.476296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56896 -39.02546 -36.42366 -34.00271 -33.90204 -32.26747 -31.70182 -28.91866 -26.90689 -25.03965 -24.15439 -23.01609 -20.91127 -20.38605 -20.09246 -19.46866 -17.36028 -16.51816 -16.43165 -15.94174 -15.81564 -15.10421 -14.79154 -14.46958 -14.12056 -13.78610 -13.23454 -13.16562 -12.82900 -12.75466 -12.33432 -12.15317 -12.12609 -11.82178 -11.75545 -11.03375 -10.96307 -10.82224 -10.76569 -10.65014 -10.63280 -10.58651 -10.53275 -10.34203 -10.31061 -10.07646 -9.70354 -9.47651 -9.15817 -8.38673 -6.03429 -4.06449 2.41389 2.96815 3.31029 3.37153 3.40814 4.31214 4.39603 4.43504 4.58659 4.76886 4.85973 4.90174 5.05055 5.11671 5.20795 5.23649 5.32369 5.32675 5.44598 5.51118 5.59483 5.60202 5.65753 5.73298 5.82629 5.86548 5.93144 5.97563 6.02628 6.04249 6.08636 6.18263 6.31959 6.32446 6.55288 6.57403 6.89432 7.00706 7.60631 7.71791 7.94875 8.01356 8.36369 8.99887 9.57793 11.08058 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.054956 B = 0.002631 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.377889 B =10638.871996 C =10953.917513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.361 6.361 13 C 0.455 3.545 14 O -0.508 6.508 15 C -0.115 4.115 16 C -0.074 4.074 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.114 4.114 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.999 -25.571 1.178 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.278 6.278 13 C 0.298 3.702 14 O -0.397 6.397 15 C -0.153 4.153 16 C -0.093 4.093 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.151 4.151 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.475 -25.450 1.186 25.868 hybrid contribution 0.229 1.053 -0.015 1.077 sum 4.704 -24.397 1.170 24.874 Atomic orbital electron populations 1.69969 1.06093 1.26757 1.50575 1.25037 0.94886 0.99381 0.95212 0.86540 0.79802 0.83215 0.78136 1.20610 1.21186 1.19812 1.21177 0.93120 0.90696 1.50953 0.92435 1.19050 0.93850 0.90785 0.97653 1.21757 0.99901 0.91104 1.01897 1.23466 0.91220 0.83748 1.02027 1.86501 1.42741 1.15393 1.83150 1.23650 0.88838 0.85066 0.72677 1.90639 1.17056 1.86751 1.45253 1.21598 0.97979 0.90095 1.05587 1.19975 0.97161 0.92214 0.99923 1.21502 0.96788 1.00714 0.96232 1.21258 0.98247 0.93973 1.01659 1.21944 0.96470 0.96553 1.00583 1.21342 0.97104 1.00131 0.97042 1.21297 1.00325 0.96450 0.97247 1.20535 0.98166 0.94281 1.02155 0.92892 0.96271 0.96247 0.92202 0.92201 0.91622 0.91627 0.87966 0.87927 0.90398 0.92128 0.90530 0.92061 0.92384 0.92585 0.92541 0.92660 0.92067 0.91497 0.91990 0.92032 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 11 C 0.07 1.28 5.47 37.16 0.20 1.49 16 12 O -0.36 -6.07 10.22 -39.23 -0.40 -6.47 16 13 C 0.45 6.70 7.45 36.01 0.27 6.97 16 14 O -0.51 -8.72 13.79 -18.75 -0.26 -8.97 16 15 C -0.11 -1.15 5.21 -27.88 -0.15 -1.29 16 16 C -0.07 -0.70 1.39 -93.49 -0.13 -0.83 16 17 C -0.12 -1.18 4.62 -27.30 -0.13 -1.30 16 18 C -0.11 -1.09 5.32 -27.40 -0.15 -1.24 16 19 C -0.12 -0.92 5.85 -25.62 -0.15 -1.07 16 20 C -0.12 -0.83 5.31 -27.44 -0.15 -0.98 16 21 C -0.12 -0.81 5.61 -27.35 -0.15 -0.96 16 22 C -0.11 -0.83 4.44 -29.60 -0.13 -0.96 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 29 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.84 7.26 -51.93 -0.38 0.46 16 33 H 0.06 0.55 6.97 -51.93 -0.36 0.19 16 34 H 0.08 0.98 5.76 -51.93 -0.30 0.68 16 35 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.43 6.62 -51.93 -0.34 0.09 16 41 H 0.07 0.51 6.98 -51.93 -0.36 0.15 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.40 8.04 -51.93 -0.42 -0.01 16 44 H 0.06 0.43 7.46 -51.93 -0.39 0.04 16 LS Contribution 341.41 15.07 5.14 5.14 Total: -1.00 -30.85 341.41 -9.08 -39.93 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.92 Total: -4.27 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.35 Total: -15.72 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.66 Total: -15.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.85 -9.08 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750567624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.834 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds