Wall clock time and date at job start Mon Mar 30 2020 00:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00076 * 2 1 4 4 H 1.48503 * 109.46941 * 269.99567 * 3 2 1 5 5 H 1.48505 * 109.47189 * 29.99298 * 3 2 1 6 6 H 1.48496 * 109.47376 * 149.99874 * 3 2 1 7 7 C 1.37880 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47222 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.47231 * 180.02562 * 11 10 9 13 13 C 1.34221 * 116.99903 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00367 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00092 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47238 * 180.02562 * 15 13 12 17 17 C 1.54248 * 108.89537 * 296.39357 * 16 15 13 18 18 C 1.50550 * 108.48395 * 159.17985 * 17 16 15 19 19 C 1.54065 * 112.41724 * 94.26378 * 18 17 16 20 20 C 1.54069 * 112.81567 * 318.28180 * 19 18 17 21 21 C 1.50469 * 112.49379 * 318.27943 * 20 19 18 22 22 C 1.45538 * 108.89733 * 173.60137 * 16 15 13 23 23 H 0.97002 * 120.00025 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47248 * 59.99770 * 9 7 2 25 25 H 1.08994 * 109.47400 * 300.00101 * 9 7 2 26 26 H 1.09003 * 109.46913 * 59.99978 * 10 9 7 27 27 H 1.08993 * 109.47389 * 299.99953 * 10 9 7 28 28 H 1.08995 * 109.46885 * 60.00179 * 11 10 9 29 29 H 1.09006 * 109.46726 * 300.00547 * 11 10 9 30 30 H 1.09001 * 109.46953 * 299.99668 * 15 13 12 31 31 H 1.09000 * 109.47318 * 59.99266 * 15 13 12 32 32 H 1.09002 * 108.87282 * 54.99578 * 16 15 13 33 33 H 1.08996 * 109.62706 * 278.97594 * 17 16 15 34 34 H 1.09000 * 109.62413 * 39.55385 * 17 16 15 35 35 H 1.09004 * 108.92282 * 333.51199 * 18 17 16 36 36 H 1.09000 * 108.91601 * 215.02220 * 18 17 16 37 37 H 1.08992 * 108.81855 * 197.42042 * 19 18 17 38 38 H 1.09004 * 108.72403 * 79.07471 * 19 18 17 39 39 H 1.08997 * 108.87505 * 197.50108 * 20 19 18 40 40 H 1.08999 * 108.87916 * 79.05940 * 20 19 18 41 41 H 1.08997 * 109.63072 * 334.44531 * 21 20 19 42 42 H 1.09007 * 109.62889 * 213.86255 * 21 20 19 43 43 H 1.09000 * 108.89472 * 303.44560 * 22 16 15 44 44 H 1.09003 * 108.89567 * 62.02724 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 8 2.4238 -6.0908 0.0018 13 6 1.9107 -7.3311 0.0019 14 8 0.7129 -7.4894 0.0019 15 6 2.8287 -8.5263 0.0031 16 6 1.9954 -9.8094 0.0023 17 6 1.1778 -9.8748 1.3086 18 6 0.0176 -10.8112 1.0991 19 6 0.3306 -12.2471 1.5616 20 6 1.7478 -12.7058 1.1684 21 6 2.1218 -12.2873 -0.2277 22 6 2.8865 -10.9500 -0.1500 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8902 26 1 2.8719 -3.6043 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0452 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.4582 -8.5018 -0.8865 31 1 3.4569 -8.5011 0.8935 32 1 1.3082 -9.7830 -0.8434 33 1 1.8081 -10.2454 2.1169 34 1 0.8050 -8.8812 1.5573 35 1 -0.2350 -10.8294 0.0389 36 1 -0.8414 -10.4399 1.6579 37 1 -0.3953 -12.9264 1.1149 38 1 0.2343 -12.2941 2.6463 39 1 1.7982 -13.7925 1.2362 40 1 2.4644 -12.2772 1.8690 41 1 1.2195 -12.1589 -0.8256 42 1 2.7589 -13.0476 -0.6797 43 1 3.4695 -10.8232 -1.0622 44 1 3.5665 -10.9828 0.7012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750567624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:33 Heat of formation + Delta-G solvation = -150.660285 kcal Electronic energy + Delta-G solvation = -20383.748721 eV Core-core repulsion = 17298.626353 eV Total energy + Delta-G solvation = -3085.122367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.71455 -39.87968 -37.75390 -35.93712 -34.69915 -33.67723 -32.93467 -29.95799 -28.63646 -25.78229 -25.39814 -24.40008 -22.17533 -21.93061 -21.00474 -20.14564 -18.75234 -18.36054 -17.75706 -17.17252 -16.62379 -16.49315 -16.10122 -15.47394 -15.37578 -14.88013 -14.31454 -14.10231 -14.03697 -13.81311 -13.71845 -13.57262 -13.31291 -12.98834 -12.82661 -12.54622 -12.51492 -12.37291 -12.08601 -11.86387 -11.63944 -11.51658 -11.45548 -11.35986 -11.30577 -11.27154 -11.18006 -11.01064 -10.97058 -10.58637 -8.22954 -6.34785 1.23314 1.40843 1.42587 1.53799 1.73960 2.40832 3.10854 3.60403 3.66697 3.71146 3.98248 3.99777 4.06464 4.20751 4.22369 4.34588 4.39950 4.43975 4.46984 4.56038 4.63334 4.73755 4.78448 4.81991 4.89503 4.97953 5.06349 5.07848 5.16737 5.19724 5.31750 5.35999 5.39491 5.41786 5.43768 5.49355 5.56916 5.61932 5.62972 5.66336 5.78704 6.17830 6.76959 6.81919 7.34873 8.89396 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.054956 B = 0.002631 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.377889 B =10638.871996 C =10953.917513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.078 3.922 12 O -0.362 6.362 13 C 0.450 3.550 14 O -0.537 6.537 15 C -0.107 4.107 16 C -0.067 4.067 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.112 4.112 23 H 0.265 0.735 24 H -0.005 1.005 25 H -0.004 1.004 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 -26.624 1.191 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.005 3.995 12 O -0.279 6.279 13 C 0.295 3.705 14 O -0.427 6.427 15 C -0.144 4.144 16 C -0.086 4.086 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.150 4.150 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.959 -26.528 1.197 27.452 hybrid contribution -0.606 1.314 -0.015 1.447 sum 6.354 -25.214 1.182 26.029 Atomic orbital electron populations 1.70106 1.07936 1.27966 1.51466 1.26039 0.95807 1.03621 0.94565 0.85365 0.78634 0.77992 0.78567 1.19667 1.20798 1.18488 1.21627 0.93763 0.91844 1.50876 0.91617 1.18935 0.94279 0.92606 0.95347 1.21450 0.98684 0.90470 1.02507 1.23058 0.91003 0.83987 1.01471 1.86496 1.42031 1.15810 1.83575 1.24712 0.89337 0.85150 0.71326 1.90640 1.18705 1.86847 1.46518 1.21803 0.97366 0.87434 1.07836 1.19943 0.97073 0.93018 0.98533 1.21466 0.97293 0.99085 0.97348 1.21241 0.97704 0.95293 1.00894 1.21916 0.97525 0.95082 1.00723 1.21349 0.96210 1.00833 0.97123 1.21305 1.00166 0.96712 0.97132 1.20514 0.97848 0.93217 1.03376 0.92660 0.98621 0.98605 0.91509 0.91469 0.92246 0.92278 0.85408 0.85590 0.92253 0.90731 0.93611 0.93007 0.93742 0.92261 0.92262 0.91585 0.91702 0.92555 0.90559 0.90722 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.95 5.53 30.60 0.17 -3.78 16 11 C 0.08 2.99 5.47 71.98 0.39 3.38 16 12 O -0.36 -11.89 10.22 -51.33 -0.52 -12.41 16 13 C 0.45 12.98 7.45 71.24 0.53 13.51 16 14 O -0.54 -18.82 13.79 21.96 0.30 -18.52 16 15 C -0.11 -1.89 5.21 29.85 0.16 -1.74 16 16 C -0.07 -1.16 1.39 -12.65 -0.02 -1.17 16 17 C -0.11 -2.28 4.62 30.22 0.14 -2.14 16 18 C -0.11 -2.20 5.32 30.16 0.16 -2.04 16 19 C -0.11 -1.67 5.85 31.32 0.18 -1.48 16 20 C -0.12 -1.37 5.31 30.14 0.16 -1.21 16 21 C -0.12 -1.34 5.61 30.20 0.17 -1.17 16 22 C -0.11 -1.31 4.44 28.74 0.13 -1.18 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 29 H 0.06 2.30 8.13 -2.38 -0.02 2.28 16 30 H 0.13 1.68 8.05 -2.39 -0.02 1.66 16 31 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.25 7.26 -2.39 -0.02 1.23 16 33 H 0.07 1.25 6.97 -2.39 -0.02 1.23 16 34 H 0.05 1.20 5.76 -2.39 -0.01 1.19 16 35 H 0.05 1.08 6.63 -2.38 -0.02 1.06 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.72 6.62 -2.39 -0.02 0.71 16 41 H 0.06 0.78 6.98 -2.39 -0.02 0.76 16 42 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.07 0.72 8.04 -2.39 -0.02 0.70 16 44 H 0.08 0.74 7.46 -2.39 -0.02 0.72 16 Total: -1.00 -67.33 341.41 6.05 -61.28 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.94 Total: 8.52 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 3.02 Total: -28.00 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.22 Total: -30.93 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.33 6.05 -61.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750567624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.377 kcal (2) G-P(sol) polarization free energy of solvation -67.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds