Wall clock time and date at job start Mon Mar 30 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.50696 * 109.47581 * 59.99136 * 3 2 1 5 5 O 1.20833 * 119.99595 * 0.02562 * 4 3 2 6 6 O 1.34224 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.45206 * 117.00077 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46777 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47240 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99962 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00305 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00241 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47164 * 89.99694 * 14 12 10 16 16 H 1.48496 * 109.47236 * 210.00271 * 14 12 10 17 17 H 1.48507 * 109.46844 * 329.99606 * 14 12 10 18 18 C 1.53002 * 109.46829 * 119.99257 * 2 1 3 19 19 C 1.53006 * 109.47121 * 60.00046 * 18 2 1 20 20 C 1.53007 * 109.46751 * 60.00157 * 19 18 2 21 21 C 1.52998 * 109.46829 * 299.99795 * 20 19 18 22 22 C 1.52996 * 109.47228 * 60.00433 * 21 20 19 23 23 H 1.09001 * 109.46747 * 60.00918 * 1 2 3 24 24 H 1.08998 * 109.47013 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47539 * 300.00870 * 1 2 3 26 26 H 1.09009 * 109.46302 * 299.99541 * 3 2 1 27 27 H 1.08995 * 109.47159 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47070 * 300.00162 * 7 6 4 29 29 H 1.09001 * 109.46626 * 60.00180 * 7 6 4 30 30 H 1.09000 * 109.47486 * 299.99948 * 8 7 6 31 31 H 1.09001 * 109.47362 * 60.00671 * 8 7 6 32 32 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 33 33 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 34 34 H 0.96992 * 120.00516 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47318 * 179.97438 * 18 2 1 36 36 H 1.09003 * 109.47689 * 300.00443 * 18 2 1 37 37 H 1.08991 * 109.47292 * 300.00300 * 19 18 2 38 38 H 1.08997 * 109.47250 * 179.97438 * 19 18 2 39 39 H 1.09005 * 109.46603 * 180.02562 * 20 19 18 40 40 H 1.08991 * 109.47105 * 60.00029 * 20 19 18 41 41 H 1.09003 * 109.47503 * 300.00454 * 21 20 19 42 42 H 1.09003 * 109.47072 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.47638 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.47459 * 60.00049 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1530 1.2303 5 8 0.8432 1.5657 2.0258 6 8 1.8615 3.4382 1.4424 7 6 1.3427 4.0584 2.6485 8 6 1.8143 5.5123 2.7176 9 6 1.2682 6.1656 3.9888 10 6 1.7322 7.5978 4.0567 11 1 2.3540 8.0018 3.2715 12 6 1.3619 8.3927 5.1207 13 7 1.7664 9.6427 5.1797 14 14 0.2858 7.6942 6.4785 15 1 1.1446 7.1059 7.5375 16 1 -0.5440 8.7796 7.0602 17 1 -0.5988 6.6417 5.9170 18 6 2.0399 -0.7211 1.2494 19 6 1.5299 -2.1637 1.2495 20 6 2.0400 -2.8850 0.0003 21 6 1.5301 -2.1639 -1.2489 22 6 2.0401 -0.7214 -1.2491 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 1.6767 1.9562 -0.8901 27 1 3.1300 1.4424 0.0005 28 1 0.2532 4.0298 2.6320 29 1 1.7073 3.5166 3.5212 30 1 2.9038 5.5405 2.7344 31 1 1.4501 6.0543 1.8449 32 1 0.1787 6.1374 3.9726 33 1 1.6326 5.6235 4.8614 34 1 1.5063 10.2018 5.9284 35 1 3.1300 -0.7216 1.2492 36 1 1.6765 -0.2073 2.1394 37 1 0.4400 -2.1637 1.2494 38 1 1.8935 -2.6775 2.1393 39 1 1.6763 -3.9126 0.0002 40 1 3.1299 -2.8850 0.0004 41 1 0.4400 -2.1638 -1.2490 42 1 1.8931 -2.6780 -2.1389 43 1 1.6772 -0.2077 -2.1393 44 1 3.1301 -0.7214 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753538349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:41 Heat of formation + Delta-G solvation = -128.338002 kcal Electronic energy + Delta-G solvation = -20760.617711 eV Core-core repulsion = 17676.463310 eV Total energy + Delta-G solvation = -3084.154401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87480 -39.13446 -36.49882 -34.07568 -33.43342 -31.85006 -30.96555 -28.77765 -27.32078 -26.82129 -23.28739 -22.87504 -21.84698 -20.57552 -20.09925 -18.58103 -17.45901 -16.83716 -16.53193 -15.97247 -15.64242 -14.90844 -14.71342 -14.29125 -14.21691 -13.94818 -13.29899 -13.16868 -12.73846 -12.68077 -12.47093 -12.17610 -11.97300 -11.91693 -11.76556 -11.67099 -11.20279 -11.15654 -10.98496 -10.94953 -10.70270 -10.40330 -10.30776 -10.27595 -10.10525 -9.85834 -9.75302 -9.59283 -9.25207 -8.57279 -6.07468 -4.06529 2.31660 2.87439 3.29423 3.37023 3.40464 4.31096 4.42494 4.44054 4.48835 4.78884 4.85883 4.99103 5.13281 5.14410 5.22069 5.25805 5.31812 5.34073 5.40649 5.43711 5.47189 5.50539 5.58191 5.73576 5.77837 5.80150 5.86272 5.87682 5.92735 6.02969 6.11641 6.13471 6.26619 6.37507 6.39233 6.46417 6.72603 6.87501 7.21142 7.32237 7.72431 7.94631 8.49423 8.96825 9.54061 11.05734 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.046417 B = 0.002997 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.088061 B = 9341.309241 C = 9637.697943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.045 4.045 3 C -0.108 4.108 4 C 0.458 3.542 5 O -0.505 6.505 6 O -0.358 6.358 7 C 0.066 3.934 8 C -0.102 4.102 9 C -0.010 4.010 10 C -0.522 4.522 11 H 0.074 0.926 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.108 4.108 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 -24.519 -13.011 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.045 4.045 3 C -0.146 4.146 4 C 0.301 3.699 5 O -0.394 6.394 6 O -0.275 6.275 7 C -0.007 4.007 8 C -0.139 4.139 9 C -0.048 4.048 10 C -0.560 4.560 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.146 4.146 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.284 -24.484 -12.638 27.555 hybrid contribution -0.556 -0.174 0.881 1.056 sum -0.840 -24.658 -11.757 27.330 Atomic orbital electron populations 1.22226 0.94015 1.02354 1.02999 1.20336 0.96586 0.91688 0.95917 1.21526 1.03100 0.95261 0.94706 1.23650 0.77762 0.80802 0.87653 1.90534 1.35741 1.66363 1.46804 1.86514 1.69643 1.25973 1.45363 1.23459 0.98746 0.95015 0.83458 1.21556 1.01532 0.89795 1.01065 1.19518 0.96402 0.96689 0.92180 1.21060 1.32477 0.93828 1.08589 0.90806 1.25019 0.95723 0.94707 0.97979 1.69906 1.45834 1.06693 1.31614 0.86781 0.81149 0.78991 0.82401 1.20205 1.21280 1.18981 1.21871 0.99834 0.95583 0.98785 1.21542 1.01100 0.95630 0.97315 1.21555 1.00624 0.98618 0.94955 1.21552 1.01133 0.95337 0.97672 1.21579 1.00590 0.95583 0.96803 0.93380 0.92165 0.90038 0.87850 0.87905 0.91615 0.91628 0.91595 0.91568 0.96317 0.96745 0.92641 0.92631 0.89222 0.91670 0.92335 0.92407 0.92197 0.91619 0.92218 0.91820 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 7.48 37.16 0.28 -1.31 16 2 C -0.05 -0.41 0.51 -154.51 -0.08 -0.49 16 3 C -0.11 -1.06 4.88 -27.89 -0.14 -1.19 16 4 C 0.46 6.33 7.37 36.00 0.27 6.59 16 5 O -0.51 -7.90 11.10 -18.76 -0.21 -8.11 16 6 O -0.36 -5.69 10.22 -39.24 -0.40 -6.09 16 7 C 0.07 1.15 5.47 37.16 0.20 1.35 16 8 C -0.10 -2.03 5.53 -26.73 -0.15 -2.18 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 11 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 13 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 14 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 18 C -0.12 -1.24 4.43 -26.73 -0.12 -1.36 16 19 C -0.12 -1.03 5.65 -26.72 -0.15 -1.19 16 20 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 21 C -0.12 -0.83 5.65 -26.73 -0.15 -0.99 16 22 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 25 H 0.08 1.02 5.52 -51.93 -0.29 0.73 16 26 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 29 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 33 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.13 5.52 -51.93 -0.29 0.84 16 37 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -30.76 334.05 -8.10 -38.85 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.76 Total: -3.28 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.86 Total: -16.43 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.77 Total: -27.05 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.61 Total: -14.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.76 -8.10 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753538349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.485 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds