Wall clock time and date at job start Mon Mar 30 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.50696 * 109.47581 * 59.99136 * 3 2 1 5 5 O 1.20833 * 119.99595 * 0.02562 * 4 3 2 6 6 O 1.34224 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.45206 * 117.00077 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46777 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47240 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99962 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00305 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00241 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47164 * 89.99694 * 14 12 10 16 16 H 1.48496 * 109.47236 * 210.00271 * 14 12 10 17 17 H 1.48507 * 109.46844 * 329.99606 * 14 12 10 18 18 C 1.53002 * 109.46829 * 119.99257 * 2 1 3 19 19 C 1.53006 * 109.47121 * 60.00046 * 18 2 1 20 20 C 1.53007 * 109.46751 * 60.00157 * 19 18 2 21 21 C 1.52998 * 109.46829 * 299.99795 * 20 19 18 22 22 C 1.52996 * 109.47228 * 60.00433 * 21 20 19 23 23 H 1.09001 * 109.46747 * 60.00918 * 1 2 3 24 24 H 1.08998 * 109.47013 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47539 * 300.00870 * 1 2 3 26 26 H 1.09009 * 109.46302 * 299.99541 * 3 2 1 27 27 H 1.08995 * 109.47159 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47070 * 300.00162 * 7 6 4 29 29 H 1.09001 * 109.46626 * 60.00180 * 7 6 4 30 30 H 1.09000 * 109.47486 * 299.99948 * 8 7 6 31 31 H 1.09001 * 109.47362 * 60.00671 * 8 7 6 32 32 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 33 33 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 34 34 H 0.96992 * 120.00516 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47318 * 179.97438 * 18 2 1 36 36 H 1.09003 * 109.47689 * 300.00443 * 18 2 1 37 37 H 1.08991 * 109.47292 * 300.00300 * 19 18 2 38 38 H 1.08997 * 109.47250 * 179.97438 * 19 18 2 39 39 H 1.09005 * 109.46603 * 180.02562 * 20 19 18 40 40 H 1.08991 * 109.47105 * 60.00029 * 20 19 18 41 41 H 1.09003 * 109.47503 * 300.00454 * 21 20 19 42 42 H 1.09003 * 109.47072 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.47638 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.47459 * 60.00049 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1530 1.2303 5 8 0.8432 1.5657 2.0258 6 8 1.8615 3.4382 1.4424 7 6 1.3427 4.0584 2.6485 8 6 1.8143 5.5123 2.7176 9 6 1.2682 6.1656 3.9888 10 6 1.7322 7.5978 4.0567 11 1 2.3540 8.0018 3.2715 12 6 1.3619 8.3927 5.1207 13 7 1.7664 9.6427 5.1797 14 14 0.2858 7.6942 6.4785 15 1 1.1446 7.1059 7.5375 16 1 -0.5440 8.7796 7.0602 17 1 -0.5988 6.6417 5.9170 18 6 2.0399 -0.7211 1.2494 19 6 1.5299 -2.1637 1.2495 20 6 2.0400 -2.8850 0.0003 21 6 1.5301 -2.1639 -1.2489 22 6 2.0401 -0.7214 -1.2491 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 1.6767 1.9562 -0.8901 27 1 3.1300 1.4424 0.0005 28 1 0.2532 4.0298 2.6320 29 1 1.7073 3.5166 3.5212 30 1 2.9038 5.5405 2.7344 31 1 1.4501 6.0543 1.8449 32 1 0.1787 6.1374 3.9726 33 1 1.6326 5.6235 4.8614 34 1 1.5063 10.2018 5.9284 35 1 3.1300 -0.7216 1.2492 36 1 1.6765 -0.2073 2.1394 37 1 0.4400 -2.1637 1.2494 38 1 1.8935 -2.6775 2.1393 39 1 1.6763 -3.9126 0.0002 40 1 3.1299 -2.8850 0.0004 41 1 0.4400 -2.1638 -1.2490 42 1 1.8931 -2.6780 -2.1389 43 1 1.6772 -0.2077 -2.1393 44 1 3.1301 -0.7214 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753538349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:41 Heat of formation + Delta-G solvation = -144.020368 kcal Electronic energy + Delta-G solvation = -20761.297749 eV Core-core repulsion = 17676.463310 eV Total energy + Delta-G solvation = -3084.834439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88122 -40.00823 -37.70343 -35.93086 -34.19975 -33.83511 -31.60025 -29.99864 -28.72688 -27.61866 -24.94696 -23.54842 -22.79120 -22.08887 -21.30531 -19.29874 -18.99677 -18.51939 -17.73933 -17.11592 -16.39830 -16.23754 -15.98370 -15.47310 -15.18753 -14.86841 -14.81426 -14.31215 -14.15588 -13.84636 -13.66104 -13.32964 -12.96736 -12.88092 -12.68225 -12.59131 -12.53922 -12.37976 -12.06600 -11.98366 -11.83593 -11.78719 -11.73441 -11.48714 -11.38290 -11.29388 -11.01851 -10.89256 -10.78904 -10.55943 -8.31506 -6.36623 1.24382 1.35700 1.37248 1.49035 1.75052 2.34466 3.03512 3.56832 3.68901 3.77528 3.99655 4.00117 4.05443 4.19607 4.33427 4.37384 4.41404 4.47701 4.54136 4.65043 4.67208 4.71655 4.73529 4.75392 4.85718 4.92449 4.94990 5.04322 5.12580 5.17229 5.23241 5.30987 5.33840 5.35495 5.42567 5.45505 5.47381 5.53747 5.60254 5.67535 5.80097 6.24543 6.70657 6.82598 7.27949 8.85099 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.046417 B = 0.002997 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.088061 B = 9341.309241 C = 9637.697943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.043 4.043 3 C -0.104 4.104 4 C 0.452 3.548 5 O -0.524 6.524 6 O -0.366 6.366 7 C 0.076 3.924 8 C -0.093 4.093 9 C -0.009 4.009 10 C -0.535 4.535 11 H 0.035 0.965 12 C 0.005 3.995 13 N -0.949 5.949 14 Si 0.950 3.050 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.247 1.247 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.104 4.104 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.267 0.733 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -26.849 -13.819 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.043 4.043 3 C -0.141 4.141 4 C 0.298 3.702 5 O -0.414 6.414 6 O -0.282 6.282 7 C 0.003 3.997 8 C -0.130 4.130 9 C -0.046 4.046 10 C -0.572 4.572 11 H 0.054 0.946 12 C -0.192 4.192 13 N -0.590 5.590 14 Si 0.773 3.227 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.170 1.170 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.141 4.141 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.630 -26.837 -13.465 30.032 hybrid contribution -0.401 0.554 1.072 1.272 sum -1.031 -26.283 -12.393 29.076 Atomic orbital electron populations 1.22178 0.94776 1.02456 1.01952 1.20352 0.95942 0.91454 0.96552 1.21715 1.04212 0.95078 0.93113 1.24529 0.77258 0.79864 0.88580 1.90551 1.36646 1.66436 1.47798 1.86508 1.69912 1.27339 1.44485 1.23096 0.98711 0.93424 0.84500 1.21317 1.01120 0.91503 0.99110 1.19444 0.96679 0.94096 0.94414 1.21406 1.31851 0.96395 1.07596 0.94641 1.26008 0.97341 0.94934 1.00914 1.70055 1.47643 1.08395 1.32888 0.85658 0.79391 0.78704 0.78920 1.19048 1.20827 1.17025 1.21825 1.00059 0.96158 0.98063 1.21528 1.00636 0.95098 0.98285 1.21539 1.00825 0.98849 0.94254 1.21565 1.00985 0.95193 0.97937 1.21563 1.01128 0.95545 0.95888 0.92456 0.91570 0.92897 0.85820 0.85976 0.91421 0.91375 0.91954 0.91962 0.95724 0.95823 0.92363 0.92123 0.92191 0.92402 0.92533 0.91664 0.91805 0.91925 0.90821 0.90621 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 7.48 71.98 0.54 -2.38 16 2 C -0.04 -0.70 0.51 -52.18 -0.03 -0.73 16 3 C -0.10 -1.79 4.88 29.85 0.15 -1.64 16 4 C 0.45 11.99 7.37 71.23 0.53 12.51 16 5 O -0.52 -16.22 11.10 21.94 0.24 -15.97 16 6 O -0.37 -11.18 10.22 -51.35 -0.52 -11.70 16 7 C 0.08 2.57 5.47 71.98 0.39 2.97 16 8 C -0.09 -3.67 5.53 30.60 0.17 -3.50 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.29 16 10 C -0.53 -31.04 9.66 25.60 0.25 -30.80 16 11 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 12 C 0.01 0.30 5.47 84.65 0.46 0.76 16 13 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 14 Si 0.95 44.37 27.47 68.60 1.88 46.26 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 18 C -0.12 -2.35 4.43 30.60 0.14 -2.21 16 19 C -0.12 -1.93 5.65 30.60 0.17 -1.76 16 20 C -0.12 -1.45 5.92 30.60 0.18 -1.27 16 21 C -0.12 -1.33 5.65 30.59 0.17 -1.15 16 22 C -0.10 -1.19 4.73 30.59 0.14 -1.05 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 1.13 4.81 -2.39 -0.01 1.11 16 25 H 0.05 1.31 5.52 -2.39 -0.01 1.29 16 26 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 29 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.02 1.12 7.20 -2.39 -0.02 1.11 16 33 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 34 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.51 5.52 -2.39 -0.01 1.50 16 37 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -67.17 334.05 6.18 -60.99 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.90 Total: 10.50 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 3.38 Total: -30.55 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.30 Total: -59.52 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.28 Total: -27.68 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -67.17 6.18 -60.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753538349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.027 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds