Wall clock time and date at job start Mon Mar 30 2020 00:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46800 * 2 1 4 4 C 1.52997 * 109.47300 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47120 * 64.99553 * 4 3 2 6 6 C 1.53002 * 109.47263 * 183.01375 * 5 4 3 7 7 C 1.52993 * 109.47241 * 173.69021 * 6 5 4 8 8 C 1.50694 * 109.47387 * 184.99646 * 4 3 2 9 9 O 1.20826 * 120.00272 * 322.75761 * 8 4 3 10 10 O 1.34229 * 120.00206 * 142.75868 * 8 4 3 11 11 C 1.45197 * 117.00614 * 185.39203 * 10 8 4 12 12 C 1.52991 * 109.47788 * 183.59088 * 11 10 8 13 13 C 1.50707 * 115.54840 * 54.43616 * 12 11 10 14 14 H 1.08003 * 119.99877 * 215.47580 * 13 12 11 15 15 C 1.37875 * 119.99748 * 35.19803 * 13 12 11 16 16 N 1.31515 * 120.00123 * 5.89826 * 15 13 12 17 17 Si 1.86807 * 119.99923 * 185.88984 * 15 13 12 18 18 H 1.48498 * 109.46909 * 60.00546 * 17 15 13 19 19 H 1.48503 * 109.46793 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47050 * 300.00378 * 17 15 13 21 21 C 1.52997 * 117.50390 * 200.10602 * 12 11 10 22 22 C 1.53001 * 117.50394 * 268.77114 * 12 11 10 23 23 H 1.08997 * 109.47363 * 300.00524 * 1 2 3 24 24 H 1.09000 * 109.46935 * 60.00443 * 1 2 3 25 25 H 1.09006 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47357 * 240.00034 * 2 1 3 27 27 H 1.09000 * 109.46935 * 119.99557 * 2 1 3 28 28 H 1.08997 * 109.47590 * 59.99615 * 3 2 1 29 29 H 1.09000 * 109.47015 * 299.99508 * 3 2 1 30 30 H 1.09002 * 109.46952 * 305.00019 * 4 3 2 31 31 H 1.09000 * 109.47325 * 303.00939 * 5 4 3 32 32 H 1.09000 * 109.47130 * 63.01316 * 5 4 3 33 33 H 1.09006 * 109.46997 * 293.68861 * 6 5 4 34 34 H 1.09006 * 109.46857 * 53.68402 * 6 5 4 35 35 H 1.08994 * 109.47384 * 59.99647 * 7 6 5 36 36 H 1.09004 * 109.47104 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47099 * 299.99375 * 7 6 5 38 38 H 1.09007 * 109.46746 * 63.58773 * 11 10 8 39 39 H 1.08999 * 109.47171 * 303.59887 * 11 10 8 40 40 H 0.97004 * 120.00320 * 184.98150 * 16 15 13 41 41 H 1.09002 * 117.50092 * 215.00332 * 21 12 11 42 42 H 1.09003 * 117.49486 * 0.02562 * 21 12 11 43 43 H 1.09002 * 117.49433 * 359.97202 * 22 12 11 44 44 H 1.08997 * 117.50219 * 144.96708 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0805 0.8328 -1.3064 6 6 5.6086 0.7639 -1.2743 7 6 6.1113 0.0130 -2.5088 8 6 4.0721 2.8581 0.1244 9 8 3.4883 3.7572 -0.4330 10 8 5.1680 3.1201 0.8539 11 6 5.5254 4.5165 1.0287 12 6 6.8401 4.6132 1.8051 13 6 7.9962 3.8402 1.2245 14 1 8.7146 3.3699 1.8796 15 6 8.1334 3.7284 -0.1428 16 7 7.3250 4.3907 -0.9412 17 14 9.4678 2.6363 -0.8615 18 1 9.2615 1.2380 -0.4062 19 1 9.4052 2.6890 -2.3442 20 1 10.7977 3.1144 -0.4052 21 6 7.1549 5.9400 2.4989 22 6 6.7546 4.7178 3.3291 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.8534 0.8427 31 1 3.6739 -0.1720 -1.4217 32 1 3.7622 1.4521 -2.1450 33 1 6.0179 1.7742 -1.2719 34 1 5.9299 0.2396 -0.3742 35 1 5.7901 0.5372 -3.4088 36 1 7.2001 -0.0357 -2.4862 37 1 5.7022 -0.9973 -2.5112 38 1 4.7375 5.0264 1.5832 39 1 5.6446 4.9860 0.0522 40 1 7.3738 4.2569 -1.9007 41 1 8.1981 6.2538 2.5354 42 1 6.4250 6.7439 2.4025 43 1 5.7616 4.7182 3.7786 44 1 7.5342 4.2272 3.9118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753559293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:45 Heat of formation + Delta-G solvation = -98.236819 kcal Electronic energy + Delta-G solvation = -21915.698789 eV Core-core repulsion = 18832.849673 eV Total energy + Delta-G solvation = -3082.849115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.73121 -37.11511 -36.14402 -34.85225 -33.90201 -32.15570 -30.66378 -26.70111 -26.20794 -25.39419 -23.70546 -21.31641 -21.17640 -21.03392 -19.18077 -19.12704 -16.86401 -16.51113 -15.61158 -15.24638 -15.07272 -14.67610 -14.30278 -13.85074 -13.75049 -13.44818 -13.08003 -12.73404 -12.41441 -12.14399 -12.00231 -11.77910 -11.64329 -11.52077 -11.13820 -10.98829 -10.92011 -10.85154 -10.75313 -10.51220 -10.47081 -10.32359 -10.26349 -10.19259 -9.79608 -9.39895 -9.20746 -9.05356 -8.75678 -8.12965 -6.00266 -4.08848 3.10580 3.28196 3.33922 3.36566 3.64122 4.37730 4.78661 4.90614 4.98484 5.06826 5.17824 5.31406 5.37932 5.50462 5.57139 5.62581 5.71176 5.74659 5.82226 5.86782 5.92267 6.02531 6.05129 6.08846 6.12981 6.18059 6.24786 6.29475 6.40920 6.45078 6.51342 6.62911 6.65144 6.67278 6.82968 6.87103 7.01136 7.25998 7.47789 7.69918 7.91898 8.35085 8.77593 8.89248 9.52405 10.98428 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.007088 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.419977 B = 3949.668968 C = 5149.715804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.082 4.082 5 C -0.104 4.104 6 C -0.136 4.136 7 C -0.147 4.147 8 C 0.461 3.539 9 O -0.527 6.527 10 O -0.323 6.323 11 C 0.113 3.887 12 C 0.049 3.951 13 C -0.479 4.479 14 H 0.060 0.940 15 C 0.078 3.922 16 N -0.880 5.880 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.277 1.277 21 C -0.195 4.195 22 C -0.209 4.209 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.020 0.980 39 H 0.118 0.882 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 -8.618 0.087 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.102 4.102 5 C -0.141 4.141 6 C -0.174 4.174 7 C -0.205 4.205 8 C 0.304 3.696 9 O -0.418 6.418 10 O -0.238 6.238 11 C 0.040 3.960 12 C 0.048 3.952 13 C -0.516 4.516 14 H 0.078 0.922 15 C -0.125 4.125 16 N -0.518 5.518 17 Si 0.713 3.287 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.233 4.233 22 C -0.247 4.247 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.797 -8.242 -0.279 12.058 hybrid contribution 0.712 -0.317 -0.329 0.846 sum -8.085 -8.559 -0.608 11.789 Atomic orbital electron populations 1.21763 0.95903 1.01325 1.01899 1.21582 0.95735 0.96523 1.02330 1.21508 0.92444 0.97052 1.03284 1.21065 0.96242 0.91767 1.01117 1.21598 0.96447 1.00673 0.95423 1.21669 0.94534 1.02907 0.98272 1.21726 1.00920 0.99561 0.98261 1.23342 0.78829 0.91354 0.76080 1.90562 1.57893 1.48153 1.45188 1.86475 1.40801 1.32597 1.63891 1.22808 0.92808 0.77163 1.03242 1.18899 0.93694 0.94986 0.87581 1.20383 1.08043 1.31938 0.91202 0.92179 1.24865 0.96005 0.94738 0.96876 1.69788 1.38380 1.39698 1.03901 0.86748 0.82307 0.81548 0.78071 1.19800 1.21087 1.20296 1.22968 1.00340 0.91961 1.08003 1.22946 1.00076 1.04182 0.97455 0.92796 0.92714 0.92894 0.91519 0.91845 0.91750 0.90731 0.88535 0.90803 0.91470 0.89996 0.91549 0.93040 0.92980 0.93247 0.96170 0.86473 0.92727 0.89848 0.91521 0.91365 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.30 5.69 -26.73 -0.15 -1.45 16 3 C -0.11 -1.42 4.29 -26.73 -0.11 -1.53 16 4 C -0.08 -1.32 2.31 -91.77 -0.21 -1.53 16 5 C -0.10 -1.55 4.52 -26.73 -0.12 -1.67 16 6 C -0.14 -2.34 5.61 -26.73 -0.15 -2.49 16 7 C -0.15 -2.19 9.91 37.15 0.37 -1.82 16 8 C 0.46 9.76 5.96 36.00 0.21 9.98 16 9 O -0.53 -12.43 16.10 -18.75 -0.30 -12.73 16 10 O -0.32 -7.68 9.74 -39.26 -0.38 -8.06 16 11 C 0.11 2.81 4.53 37.15 0.17 2.98 16 12 C 0.05 1.22 2.15 -155.66 -0.33 0.89 16 13 C -0.48 -12.87 8.79 -34.44 -0.30 -13.18 16 14 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 15 C 0.08 2.07 5.27 -17.82 -0.09 1.98 16 16 N -0.88 -24.14 10.56 55.43 0.59 -23.56 16 17 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 C -0.19 -4.38 9.96 -26.69 -0.27 -4.65 16 22 C -0.21 -4.56 9.93 -26.69 -0.26 -4.83 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.66 6.50 -51.93 -0.34 0.32 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 30 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 0.89 6.43 -51.93 -0.33 0.55 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.76 7.39 -51.93 -0.38 1.37 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.02 0.48 8.09 -51.92 -0.42 0.06 16 39 H 0.12 3.24 5.79 -51.93 -0.30 2.94 16 40 H 0.26 7.01 8.32 -40.82 -0.34 6.68 16 41 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -28.65 356.59 -8.72 -37.37 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.08 Total: 4.22 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.89 Total: -18.35 kcal Atomic # 7 Polarization: -24.14 SS G_CDS: 0.59 Total: -23.56 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.68 Total: -20.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.65 -8.72 -37.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753559293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.867 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds