Wall clock time and date at job start Mon Mar 30 2020 00:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46800 * 2 1 4 4 C 1.52997 * 109.47300 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47120 * 64.99553 * 4 3 2 6 6 C 1.53002 * 109.47263 * 183.01375 * 5 4 3 7 7 C 1.52993 * 109.47241 * 173.69021 * 6 5 4 8 8 C 1.50694 * 109.47387 * 184.99646 * 4 3 2 9 9 O 1.20826 * 120.00272 * 322.75761 * 8 4 3 10 10 O 1.34229 * 120.00206 * 142.75868 * 8 4 3 11 11 C 1.45197 * 117.00614 * 185.39203 * 10 8 4 12 12 C 1.52991 * 109.47788 * 183.59088 * 11 10 8 13 13 C 1.50707 * 115.54840 * 54.43616 * 12 11 10 14 14 H 1.08003 * 119.99877 * 215.47580 * 13 12 11 15 15 C 1.37875 * 119.99748 * 35.19803 * 13 12 11 16 16 N 1.31515 * 120.00123 * 5.89826 * 15 13 12 17 17 Si 1.86807 * 119.99923 * 185.88984 * 15 13 12 18 18 H 1.48498 * 109.46909 * 60.00546 * 17 15 13 19 19 H 1.48503 * 109.46793 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47050 * 300.00378 * 17 15 13 21 21 C 1.52997 * 117.50390 * 200.10602 * 12 11 10 22 22 C 1.53001 * 117.50394 * 268.77114 * 12 11 10 23 23 H 1.08997 * 109.47363 * 300.00524 * 1 2 3 24 24 H 1.09000 * 109.46935 * 60.00443 * 1 2 3 25 25 H 1.09006 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47357 * 240.00034 * 2 1 3 27 27 H 1.09000 * 109.46935 * 119.99557 * 2 1 3 28 28 H 1.08997 * 109.47590 * 59.99615 * 3 2 1 29 29 H 1.09000 * 109.47015 * 299.99508 * 3 2 1 30 30 H 1.09002 * 109.46952 * 305.00019 * 4 3 2 31 31 H 1.09000 * 109.47325 * 303.00939 * 5 4 3 32 32 H 1.09000 * 109.47130 * 63.01316 * 5 4 3 33 33 H 1.09006 * 109.46997 * 293.68861 * 6 5 4 34 34 H 1.09006 * 109.46857 * 53.68402 * 6 5 4 35 35 H 1.08994 * 109.47384 * 59.99647 * 7 6 5 36 36 H 1.09004 * 109.47104 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47099 * 299.99375 * 7 6 5 38 38 H 1.09007 * 109.46746 * 63.58773 * 11 10 8 39 39 H 1.08999 * 109.47171 * 303.59887 * 11 10 8 40 40 H 0.97004 * 120.00320 * 184.98150 * 16 15 13 41 41 H 1.09002 * 117.50092 * 215.00332 * 21 12 11 42 42 H 1.09003 * 117.49486 * 0.02562 * 21 12 11 43 43 H 1.09002 * 117.49433 * 359.97202 * 22 12 11 44 44 H 1.08997 * 117.50219 * 144.96708 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0805 0.8328 -1.3064 6 6 5.6086 0.7639 -1.2743 7 6 6.1113 0.0130 -2.5088 8 6 4.0721 2.8581 0.1244 9 8 3.4883 3.7572 -0.4330 10 8 5.1680 3.1201 0.8539 11 6 5.5254 4.5165 1.0287 12 6 6.8401 4.6132 1.8051 13 6 7.9962 3.8402 1.2245 14 1 8.7146 3.3699 1.8796 15 6 8.1334 3.7284 -0.1428 16 7 7.3250 4.3907 -0.9412 17 14 9.4678 2.6363 -0.8615 18 1 9.2615 1.2380 -0.4062 19 1 9.4052 2.6890 -2.3442 20 1 10.7977 3.1144 -0.4052 21 6 7.1549 5.9400 2.4989 22 6 6.7546 4.7178 3.3291 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.8534 0.8427 31 1 3.6739 -0.1720 -1.4217 32 1 3.7622 1.4521 -2.1450 33 1 6.0179 1.7742 -1.2719 34 1 5.9299 0.2396 -0.3742 35 1 5.7901 0.5372 -3.4088 36 1 7.2001 -0.0357 -2.4862 37 1 5.7022 -0.9973 -2.5112 38 1 4.7375 5.0264 1.5832 39 1 5.6446 4.9860 0.0522 40 1 7.3738 4.2569 -1.9007 41 1 8.1981 6.2538 2.5354 42 1 6.4250 6.7439 2.4025 43 1 5.7616 4.7182 3.7786 44 1 7.5342 4.2272 3.9118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753559293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:44 Heat of formation + Delta-G solvation = -110.677509 kcal Electronic energy + Delta-G solvation = -21916.238257 eV Core-core repulsion = 18832.849673 eV Total energy + Delta-G solvation = -3083.388584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41116 -38.79387 -37.60806 -36.64988 -34.98421 -34.17889 -31.79815 -28.50384 -27.43078 -27.29213 -25.01661 -23.03218 -22.50682 -22.14494 -21.08504 -20.63265 -18.54942 -18.39469 -17.29587 -16.94925 -16.59762 -16.08755 -15.74785 -15.48157 -15.05882 -14.73300 -14.58476 -13.98970 -13.78403 -13.64180 -13.48082 -13.38258 -12.99763 -12.86525 -12.77412 -12.69330 -12.36739 -12.18243 -12.14406 -12.05780 -11.89189 -11.65251 -11.58666 -11.56501 -11.34992 -11.25179 -11.03484 -10.92080 -10.65862 -10.07830 -8.02921 -6.17546 1.39558 1.41076 1.43410 1.48179 2.04000 2.41990 3.03945 3.55162 3.61106 3.84177 3.87778 4.13573 4.20332 4.24059 4.26206 4.30200 4.40304 4.44852 4.59118 4.60438 4.71026 4.76292 4.79257 4.83839 4.89044 4.90312 4.93955 5.00849 5.04102 5.11257 5.18963 5.21827 5.28959 5.34850 5.40370 5.43662 5.47459 5.51355 5.51939 5.83252 5.94641 6.33622 6.78794 7.07013 7.45815 8.93060 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.007088 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.419977 B = 3949.668968 C = 5149.715804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.077 4.077 5 C -0.096 4.096 6 C -0.137 4.137 7 C -0.144 4.144 8 C 0.453 3.547 9 O -0.559 6.559 10 O -0.336 6.336 11 C 0.122 3.878 12 C 0.010 3.990 13 C -0.495 4.495 14 H 0.054 0.946 15 C 0.041 3.959 16 N -0.900 5.900 17 Si 0.935 3.065 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.189 4.189 22 C -0.185 4.185 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.084 0.916 40 H 0.257 0.743 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.408 -10.890 0.547 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.096 4.096 5 C -0.133 4.133 6 C -0.175 4.175 7 C -0.201 4.201 8 C 0.299 3.701 9 O -0.451 6.451 10 O -0.250 6.250 11 C 0.048 3.952 12 C 0.009 3.991 13 C -0.532 4.532 14 H 0.073 0.927 15 C -0.159 4.159 16 N -0.538 5.538 17 Si 0.760 3.240 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.227 4.227 22 C -0.223 4.223 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.044 0.956 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.515 -10.520 0.196 14.186 hybrid contribution 0.916 0.433 -0.447 1.107 sum -8.600 -10.087 -0.251 13.258 Atomic orbital electron populations 1.21764 0.94961 1.02402 1.01760 1.21567 0.96510 0.94004 1.03452 1.21510 0.90347 0.99414 1.02446 1.21284 0.97838 0.88143 1.02325 1.21602 0.94889 1.02587 0.94185 1.21633 0.96036 1.00232 0.99571 1.21711 1.00342 1.01097 0.96972 1.24506 0.77595 0.93350 0.74673 1.90534 1.58590 1.49708 1.46267 1.86486 1.42136 1.31787 1.64628 1.22504 0.93185 0.77953 1.01539 1.19032 0.93308 0.96939 0.89804 1.20598 1.08647 1.32434 0.91540 0.92741 1.25437 0.97602 0.95734 0.97139 1.69947 1.39647 1.40684 1.03567 0.85969 0.80196 0.80486 0.77313 1.18970 1.21119 1.19880 1.22973 1.00703 0.91858 1.07143 1.22962 1.01270 1.02719 0.95308 0.92976 0.92948 0.91181 0.90313 0.90721 0.92357 0.91964 0.87054 0.86519 0.92683 0.95067 0.91527 0.93002 0.94054 0.89845 0.95645 0.89770 0.93356 0.89968 0.90256 0.89499 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.65 16 2 C -0.12 -2.08 5.69 30.59 0.17 -1.91 16 3 C -0.10 -2.53 4.29 30.59 0.13 -2.40 16 4 C -0.08 -2.36 2.31 -11.54 -0.03 -2.39 16 5 C -0.10 -2.69 4.52 30.60 0.14 -2.55 16 6 C -0.14 -4.61 5.61 30.59 0.17 -4.44 16 7 C -0.14 -4.02 9.91 71.98 0.71 -3.31 16 8 C 0.45 19.58 5.96 71.23 0.42 20.00 16 9 O -0.56 -27.23 16.10 21.96 0.35 -26.87 16 10 O -0.34 -16.31 9.74 -51.41 -0.50 -16.81 16 11 C 0.12 6.23 4.53 71.98 0.33 6.56 16 12 C 0.01 0.48 2.15 -52.93 -0.11 0.37 16 13 C -0.50 -26.96 8.79 25.60 0.23 -26.74 16 14 H 0.05 2.94 7.82 -2.91 -0.02 2.92 16 15 C 0.04 2.24 5.27 84.65 0.45 2.68 16 16 N -0.90 -51.13 10.56 21.45 0.23 -50.90 16 17 Si 0.93 43.08 29.54 68.60 2.03 45.11 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.19 -8.39 9.96 30.62 0.30 -8.08 16 22 C -0.19 -7.84 9.93 30.62 0.30 -7.54 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.08 1.22 6.50 -2.39 -0.02 1.20 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.73 8.02 -2.39 -0.02 1.72 16 30 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.12 2.32 6.43 -2.39 -0.02 2.31 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.03 1.36 7.39 -2.38 -0.02 1.34 16 34 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16 39 H 0.08 4.87 5.79 -2.39 -0.01 4.86 16 40 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 41 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 43 H 0.09 3.32 8.14 -2.39 -0.02 3.31 16 44 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -63.71 356.59 6.97 -56.73 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.93 Total: 24.14 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.93 Total: -31.40 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.23 Total: -50.90 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.15 Total: -43.69 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -63.71 6.97 -56.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753559293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.945 kcal (2) G-P(sol) polarization free energy of solvation -63.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds