Wall clock time and date at job start Mon Mar 30 2020 00:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.47054 * 2 1 4 4 C 1.53004 * 109.46856 * 119.99255 * 2 1 3 5 5 N 1.46902 * 109.46890 * 59.93775 * 4 2 1 6 6 C 1.46908 * 110.99745 * 77.47844 * 5 4 2 7 7 C 1.50698 * 109.47025 * 280.38935 * 6 5 4 8 8 H 1.08002 * 120.00488 * 354.16087 * 7 6 5 9 9 C 1.37877 * 119.99853 * 174.16050 * 7 6 5 10 10 N 1.31520 * 120.00019 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00128 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47564 * 59.99479 * 11 9 7 13 13 H 1.48505 * 109.47211 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46857 * 299.99792 * 11 9 7 15 15 C 1.46901 * 111.00018 * 201.43157 * 5 4 2 16 16 C 1.50700 * 109.47034 * 72.27906 * 15 5 4 17 17 N 1.30733 * 125.53869 * 5.34425 * 16 15 5 18 18 C 1.34449 * 109.94263 * 179.97438 * 17 16 15 19 19 O 1.21728 * 125.92005 * 180.02562 * 18 17 16 20 20 N 1.34983 * 108.15135 * 0.02562 * 18 17 16 21 21 C 1.46500 * 126.86101 * 179.97438 * 20 18 17 22 22 N 1.35152 * 125.53659 * 185.03549 * 16 15 5 23 23 H 0.96996 * 126.65104 * 0.03797 * 22 16 15 24 24 H 1.09006 * 109.46657 * 65.79679 * 1 2 3 25 25 H 1.08997 * 109.47089 * 185.78892 * 1 2 3 26 26 H 1.08998 * 109.47594 * 305.79869 * 1 2 3 27 27 H 1.08993 * 109.47494 * 239.99559 * 2 1 3 28 28 H 1.08993 * 109.46668 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46350 * 299.99749 * 3 2 1 30 30 H 1.08997 * 109.46921 * 59.99214 * 3 2 1 31 31 H 1.09005 * 109.47130 * 299.93828 * 4 2 1 32 32 H 1.08997 * 109.46918 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47026 * 40.38923 * 6 5 4 34 34 H 1.08996 * 109.46706 * 160.38596 * 6 5 4 35 35 H 0.96996 * 119.99973 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.46906 * 192.27925 * 15 5 4 37 37 H 1.09002 * 109.47094 * 312.27914 * 15 5 4 38 38 H 1.09005 * 109.47107 * 0.02562 * 21 20 18 39 39 H 1.09001 * 109.47573 * 120.01971 * 21 20 18 40 40 H 1.09008 * 109.47111 * 240.02622 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.5490 -2.1057 1.2502 6 6 2.3254 -2.9401 0.3233 7 6 1.8438 -2.7074 -1.0856 8 1 0.9812 -2.0829 -1.2653 9 6 2.5046 -3.2917 -2.1453 10 7 3.5554 -4.0518 -1.9266 11 14 1.9082 -3.0027 -3.8917 12 1 1.9548 -1.5502 -4.1969 13 1 2.7833 -3.7359 -4.8414 14 1 0.5124 -3.4920 -4.0254 15 6 1.5663 -2.6695 2.6066 16 6 0.4677 -2.0421 3.4255 17 7 -0.4347 -1.2100 2.9756 18 6 -1.2607 -0.8465 3.9723 19 8 -2.2038 -0.0830 3.8756 20 7 -0.8627 -1.4750 5.0986 21 6 -1.4743 -1.3713 6.4258 22 7 0.2518 -2.2527 4.7429 23 1 0.7679 -2.8273 5.3296 24 1 -0.3633 0.4213 -0.9374 25 1 -0.3633 -1.0224 0.1037 26 1 -0.3634 0.6011 0.8335 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6775 -0.2065 2.1393 32 1 3.1299 -0.7215 1.2492 33 1 3.3807 -2.6771 0.3947 34 1 2.1943 -3.9904 0.5833 35 1 4.0199 -4.4632 -2.6721 36 1 1.4102 -3.7470 2.5542 37 1 2.5298 -2.4642 3.0732 38 1 -2.3267 -0.6934 6.3811 39 1 -1.8104 -2.3566 6.7490 40 1 -0.7410 -0.9868 7.1348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754043131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:45 Heat of formation + Delta-G solvation = 42.130776 kcal Electronic energy + Delta-G solvation = -21458.696612 eV Core-core repulsion = 18310.686700 eV Total energy + Delta-G solvation = -3148.009912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.22367 -39.18791 -38.24156 -35.51676 -34.99982 -34.26432 -32.47707 -30.15314 -28.45292 -27.69735 -27.13378 -25.60107 -23.16671 -22.58309 -21.69645 -20.51137 -19.35482 -18.32252 -17.61135 -17.16127 -16.81223 -16.44946 -16.26148 -15.61107 -15.51028 -14.85006 -14.41254 -14.23790 -14.13271 -13.98346 -13.79030 -13.59479 -13.04391 -12.95850 -12.83537 -12.58440 -12.49535 -12.23732 -12.12592 -11.81815 -11.53237 -11.38892 -11.26313 -10.99129 -10.85908 -10.67487 -10.38852 -9.54589 -8.86400 -8.04843 -6.06704 0.42141 0.44843 1.48760 1.48824 1.56542 2.42428 2.49082 2.61994 3.23054 3.28143 3.56464 4.03265 4.16542 4.25828 4.33496 4.40604 4.48771 4.58978 4.64428 4.65862 4.82211 4.87325 4.91807 5.01344 5.06683 5.22591 5.25661 5.29014 5.33150 5.45668 5.55577 5.82425 5.91345 6.01798 6.22740 6.34113 6.49935 6.73980 7.07370 7.07800 7.19992 7.58720 9.04086 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.005353 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.933202 B = 5229.245412 C = 5682.701809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.100 4.100 3 C -0.137 4.137 4 C 0.092 3.908 5 N -0.529 5.529 6 C 0.210 3.790 7 C -0.499 4.499 8 H 0.069 0.931 9 C 0.009 3.991 10 N -0.933 5.933 11 Si 0.943 3.057 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.117 3.883 16 C 0.412 3.588 17 N -0.578 5.578 18 C 0.613 3.387 19 O -0.599 6.599 20 N -0.444 5.444 21 C 0.101 3.899 22 N -0.471 5.471 23 H 0.467 0.533 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.020 0.980 33 H -0.017 1.017 34 H 0.017 0.983 35 H 0.259 0.741 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 1.760 17.589 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.194 4.194 4 C -0.036 4.036 5 N -0.253 5.253 6 C 0.085 3.915 7 C -0.537 4.537 8 H 0.087 0.913 9 C -0.189 4.189 10 N -0.575 5.575 11 Si 0.770 3.230 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.014 4.014 16 C 0.137 3.863 17 N -0.327 5.327 18 C 0.311 3.689 19 O -0.476 6.476 20 N -0.273 5.273 21 C -0.038 4.038 22 N -0.205 5.205 23 H 0.320 0.680 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.000 1.000 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.599 2.547 16.811 17.201 hybrid contribution 0.773 -0.528 0.190 0.956 sum -1.826 2.019 17.001 17.218 Atomic orbital electron populations 1.21358 0.95155 1.01484 0.98134 1.21247 0.96198 0.95118 0.99331 1.21757 1.00470 0.95949 1.01270 1.21855 0.95197 0.88584 0.97956 1.61575 1.56431 1.02460 1.04815 1.19515 0.89926 0.91434 0.90654 1.21579 1.12610 1.28055 0.91481 0.91305 1.25581 0.95376 0.95636 1.02258 1.70024 1.21058 1.34090 1.32292 0.85832 0.78098 0.78287 0.80793 1.19858 1.21370 1.20128 1.20926 0.91869 0.99827 0.88757 1.24235 0.93061 0.88220 0.80767 1.72005 1.10106 1.22080 1.28510 1.18750 0.86209 0.83011 0.80903 1.90861 1.32091 1.41161 1.83493 1.49542 1.23241 1.41682 1.12812 1.22168 0.98981 1.04971 0.77730 1.44771 1.23605 1.42243 1.09901 0.68049 0.95463 0.92851 0.94490 0.90924 0.92873 0.92840 0.92993 0.92032 0.96170 0.99969 0.96505 0.93188 0.85471 0.88544 0.88808 0.88450 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.26 8.50 71.98 0.61 -3.65 16 2 C -0.10 -3.94 2.43 -10.79 -0.03 -3.96 16 3 C -0.14 -4.48 9.19 71.99 0.66 -3.82 16 4 C 0.09 3.37 4.04 86.30 0.35 3.72 16 5 N -0.53 -19.90 3.26 -905.34 -2.95 -22.85 16 6 C 0.21 9.69 4.80 85.55 0.41 10.10 16 7 C -0.50 -26.17 7.11 25.60 0.18 -25.99 16 8 H 0.07 3.68 5.47 -2.91 -0.02 3.67 16 9 C 0.01 0.48 5.46 84.65 0.46 0.95 16 10 N -0.93 -52.95 13.29 21.45 0.28 -52.67 16 11 Si 0.94 43.90 29.54 68.60 2.03 45.93 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 C 0.12 3.03 5.58 85.56 0.48 3.51 16 16 C 0.41 10.78 7.26 138.03 1.00 11.78 16 17 N -0.58 -20.87 9.90 -316.05 -3.13 -24.00 16 18 C 0.61 22.18 8.97 179.09 1.61 23.79 16 19 O -0.60 -26.64 17.69 -4.44 -0.08 -26.72 16 20 N -0.44 -10.29 4.06 -500.00 -2.03 -12.32 16 21 C 0.10 1.32 11.57 127.77 1.48 2.80 16 22 N -0.47 -8.13 7.36 -50.37 -0.37 -8.50 16 23 H 0.47 3.11 8.96 -213.08 -1.91 1.20 16 24 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.05 2.44 6.93 -2.39 -0.02 2.42 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 3.34 5.27 -2.39 -0.01 3.33 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 2.14 6.66 -2.38 -0.02 2.12 16 32 H 0.02 0.74 7.65 -2.39 -0.02 0.72 16 33 H -0.02 -0.87 7.63 -2.39 -0.02 -0.89 16 34 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 35 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.13 2.87 7.64 -2.39 -0.02 2.86 16 37 H 0.10 1.90 8.05 -2.39 -0.02 1.88 16 38 H 0.09 1.52 7.80 -2.38 -0.02 1.51 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -76.51 326.26 0.10 -76.41 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -0.87 Total: 5.49 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 7.22 Total: 19.23 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -8.19 Total: -120.33 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.08 Total: -26.72 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -76.51 0.10 -76.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754043131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.542 kcal (2) G-P(sol) polarization free energy of solvation -76.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds