Wall clock time and date at job start Mon Mar 30 2020 00:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 9 9 C 1.50696 * 109.46910 * 180.02562 * 7 6 5 10 10 O 1.20831 * 120.00131 * 119.99917 * 9 7 6 11 11 O 1.34230 * 120.00181 * 299.99410 * 9 7 6 12 12 C 1.45198 * 117.00175 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47297 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47472 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47298 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99854 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99899 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00092 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47338 * 89.99858 * 19 17 15 21 21 H 1.48501 * 109.47038 * 209.99578 * 19 17 15 22 22 H 1.48498 * 109.47290 * 329.99745 * 19 17 15 23 23 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 24 24 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 25 25 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 26 26 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 29 29 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 33 33 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 34 34 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47035 * 300.00187 * 12 11 9 37 37 H 1.08995 * 109.47220 * 60.00495 * 12 11 9 38 38 H 1.09003 * 109.46678 * 299.99728 * 13 12 11 39 39 H 1.09003 * 109.47431 * 59.99744 * 13 12 11 40 40 H 1.09003 * 109.46863 * 300.00058 * 14 13 12 41 41 H 1.09003 * 109.47104 * 59.99419 * 14 13 12 42 42 H 0.96993 * 120.00605 * 180.02562 * 18 17 15 43 43 H 1.08992 * 109.47554 * 299.99692 * 23 2 1 44 44 H 1.09004 * 109.47108 * 59.99942 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2489 8 1 3.9334 0.3075 -1.2486 9 6 4.0729 -1.4307 -2.4792 10 8 3.2878 -1.8900 -3.2746 11 8 5.3926 -1.5533 -2.6917 12 6 5.8043 -2.2490 -3.8978 13 6 7.3323 -2.2895 -3.9668 14 6 7.7662 -3.0221 -5.2380 15 6 9.2711 -3.0614 -5.3063 16 1 9.8592 -2.6096 -4.5213 17 6 9.8971 -3.6753 -6.3704 18 7 11.2104 -3.7101 -6.4298 19 14 8.8798 -4.4574 -7.7278 20 1 8.6107 -3.4518 -8.7869 21 1 9.6269 -5.6013 -8.3098 22 1 7.5930 -4.9410 -7.1660 23 6 2.0400 -0.7212 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 -0.2074 2.1393 31 1 1.6767 -1.7489 1.2493 32 1 3.9330 0.3071 1.2498 33 1 3.9333 -1.2348 2.1394 34 1 3.7176 -2.4694 0.0002 35 1 5.1705 -1.4408 0.0004 36 1 5.4146 -3.2668 -3.8811 37 1 5.4147 -1.7249 -4.7705 38 1 7.7223 -1.2718 -3.9834 39 1 7.7217 -2.8138 -3.0941 40 1 7.3760 -4.0398 -5.2220 41 1 7.3768 -2.4974 -6.1105 42 1 11.6508 -4.1415 -7.1785 43 1 1.6768 -1.7489 -1.2492 44 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756267329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:08 Heat of formation + Delta-G solvation = -135.259226 kcal Electronic energy + Delta-G solvation = -20709.918658 eV Core-core repulsion = 17625.464130 eV Total energy + Delta-G solvation = -3084.454527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80635 -39.20830 -36.47662 -34.12685 -33.63434 -31.86374 -31.33578 -27.69187 -27.65214 -26.63572 -24.54525 -22.73247 -21.89076 -20.52619 -20.04052 -18.75935 -17.33171 -16.89642 -16.38043 -16.22504 -15.23260 -14.95598 -14.67446 -14.26553 -14.17748 -13.91631 -13.46853 -13.15917 -12.77864 -12.74782 -12.41519 -12.23818 -12.16688 -11.99847 -11.76280 -11.73195 -11.32618 -11.28448 -11.04471 -10.95031 -10.79703 -10.46663 -10.44056 -10.36131 -10.25782 -9.94875 -9.77006 -9.70030 -9.24916 -8.56979 -6.07243 -4.06222 2.31910 2.85120 3.29736 3.37315 3.40994 4.29152 4.33659 4.39433 4.42872 4.69008 4.76112 4.96333 5.00159 5.05274 5.13586 5.18611 5.26111 5.34606 5.37195 5.43248 5.47183 5.51393 5.55428 5.63350 5.69741 5.72498 5.75796 5.85087 5.87709 5.91640 5.97782 6.02905 6.08952 6.21762 6.38845 6.39624 6.69523 6.82611 7.21425 7.32662 7.72576 7.92542 8.49703 8.97090 9.54348 11.05974 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042946 B = 0.003066 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.826639 B = 9129.114367 C = 9472.098531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.081 4.081 8 H 0.109 0.891 9 C 0.460 3.540 10 O -0.514 6.514 11 O -0.355 6.355 12 C 0.065 3.935 13 C -0.101 4.101 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.092 4.092 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.264 0.736 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.786 8.471 16.153 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.100 4.100 8 H 0.127 0.873 9 C 0.303 3.697 10 O -0.403 6.403 11 O -0.271 6.271 12 C -0.008 4.008 13 C -0.139 4.139 14 C -0.048 4.048 15 C -0.559 4.559 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.832 8.246 15.773 27.400 hybrid contribution -0.399 -0.538 -1.055 1.249 sum -21.232 7.708 14.719 26.960 Atomic orbital electron populations 1.21846 0.94301 1.01888 1.01761 1.20546 0.95481 0.95565 0.94874 1.22017 1.01558 0.95175 1.01795 1.21643 0.95571 1.00572 0.97044 1.21582 0.95585 1.01137 0.97381 1.21536 1.01738 0.99336 0.92352 1.21141 0.97114 1.00804 0.90913 0.87325 1.23718 0.81198 0.77464 0.87367 1.90642 1.57022 1.45857 1.46738 1.86502 1.24881 1.70499 1.45257 1.23476 0.98004 0.95832 0.83500 1.21550 0.89038 1.02200 1.01071 1.19522 0.97788 0.95321 0.92189 1.21058 0.89292 1.36996 1.08592 0.90794 1.25015 0.94816 0.95610 0.97977 1.69904 1.08028 1.44506 1.31611 0.86782 0.80799 0.79352 0.82402 1.20202 1.21276 1.18982 1.21507 0.91914 1.01818 0.97753 0.92584 0.92545 0.92587 0.91918 0.92592 0.92601 0.91816 0.91811 0.91246 0.91407 0.91405 0.90179 0.91648 0.91648 0.91576 0.91541 0.96309 0.96745 0.92642 0.90964 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.47 37.16 0.31 -0.63 16 2 C -0.06 -0.48 0.77 -154.51 -0.12 -0.60 16 3 C -0.15 -1.01 7.78 37.16 0.29 -0.72 16 4 C -0.11 -0.76 4.73 -26.73 -0.13 -0.88 16 5 C -0.12 -0.85 5.65 -26.73 -0.15 -1.01 16 6 C -0.11 -1.04 5.14 -26.73 -0.14 -1.17 16 7 C -0.08 -0.85 2.36 -91.75 -0.22 -1.07 16 8 H 0.11 1.02 6.43 -51.93 -0.33 0.68 16 9 C 0.46 6.82 7.25 36.00 0.26 7.08 16 10 O -0.51 -8.99 15.73 -18.75 -0.29 -9.29 16 11 O -0.36 -5.79 10.12 -39.26 -0.40 -6.19 16 12 C 0.06 1.16 5.47 37.16 0.20 1.36 16 13 C -0.10 -2.03 5.53 -26.73 -0.15 -2.18 16 14 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 15 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 23 C -0.09 -0.89 3.30 -26.71 -0.09 -0.98 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.43 4.81 -51.93 -0.25 0.18 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 37 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -31.45 342.52 -7.91 -39.37 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -8.03 Total: -4.57 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.46 Total: -14.54 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.77 Total: -27.09 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.69 Total: -15.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.45 -7.91 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756267329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.890 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds