Wall clock time and date at job start Mon Mar 30 2020 00:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 9 9 C 1.50696 * 109.46910 * 180.02562 * 7 6 5 10 10 O 1.20831 * 120.00131 * 119.99917 * 9 7 6 11 11 O 1.34230 * 120.00181 * 299.99410 * 9 7 6 12 12 C 1.45198 * 117.00175 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47297 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47472 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47298 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99854 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99899 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00092 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47338 * 89.99858 * 19 17 15 21 21 H 1.48501 * 109.47038 * 209.99578 * 19 17 15 22 22 H 1.48498 * 109.47290 * 329.99745 * 19 17 15 23 23 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 24 24 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 25 25 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 26 26 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 29 29 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 33 33 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 34 34 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47035 * 300.00187 * 12 11 9 37 37 H 1.08995 * 109.47220 * 60.00495 * 12 11 9 38 38 H 1.09003 * 109.46678 * 299.99728 * 13 12 11 39 39 H 1.09003 * 109.47431 * 59.99744 * 13 12 11 40 40 H 1.09003 * 109.46863 * 300.00058 * 14 13 12 41 41 H 1.09003 * 109.47104 * 59.99419 * 14 13 12 42 42 H 0.96993 * 120.00605 * 180.02562 * 18 17 15 43 43 H 1.08992 * 109.47554 * 299.99692 * 23 2 1 44 44 H 1.09004 * 109.47108 * 59.99942 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2489 8 1 3.9334 0.3075 -1.2486 9 6 4.0729 -1.4307 -2.4792 10 8 3.2878 -1.8900 -3.2746 11 8 5.3926 -1.5533 -2.6917 12 6 5.8043 -2.2490 -3.8978 13 6 7.3323 -2.2895 -3.9668 14 6 7.7662 -3.0221 -5.2380 15 6 9.2711 -3.0614 -5.3063 16 1 9.8592 -2.6096 -4.5213 17 6 9.8971 -3.6753 -6.3704 18 7 11.2104 -3.7101 -6.4298 19 14 8.8798 -4.4574 -7.7278 20 1 8.6107 -3.4518 -8.7869 21 1 9.6269 -5.6013 -8.3098 22 1 7.5930 -4.9410 -7.1660 23 6 2.0400 -0.7212 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 -0.2074 2.1393 31 1 1.6767 -1.7489 1.2493 32 1 3.9330 0.3071 1.2498 33 1 3.9333 -1.2348 2.1394 34 1 3.7176 -2.4694 0.0002 35 1 5.1705 -1.4408 0.0004 36 1 5.4146 -3.2668 -3.8811 37 1 5.4147 -1.7249 -4.7705 38 1 7.7223 -1.2718 -3.9834 39 1 7.7217 -2.8138 -3.0941 40 1 7.3760 -4.0398 -5.2220 41 1 7.3768 -2.4974 -6.1105 42 1 11.6508 -4.1415 -7.1785 43 1 1.6768 -1.7489 -1.2492 44 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756267329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:07 Heat of formation + Delta-G solvation = -151.346427 kcal Electronic energy + Delta-G solvation = -20710.616251 eV Core-core repulsion = 17625.464130 eV Total energy + Delta-G solvation = -3085.152121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.88666 -40.07492 -37.81407 -35.95784 -34.43958 -33.81407 -32.11105 -29.49303 -28.17235 -27.30328 -25.78158 -24.25323 -22.58632 -22.11027 -21.35286 -19.46555 -19.01881 -18.41844 -17.66444 -17.43613 -16.34085 -16.13389 -15.60419 -15.54342 -15.28123 -14.83017 -14.74372 -14.37624 -14.13996 -13.83211 -13.77484 -13.49694 -12.94881 -12.85635 -12.79283 -12.65101 -12.47061 -12.35326 -12.10474 -12.03765 -12.00663 -11.87519 -11.77894 -11.57793 -11.42818 -11.37914 -11.11561 -11.00549 -10.91171 -10.79130 -8.31744 -6.36807 1.12778 1.35484 1.37000 1.48795 1.65286 2.34259 3.03284 3.46309 3.62189 3.66901 3.96687 4.00020 4.01031 4.06862 4.17599 4.29401 4.35498 4.41451 4.42332 4.56580 4.69878 4.71123 4.73580 4.81399 4.88785 4.93815 4.99147 5.05632 5.09127 5.14169 5.16500 5.22304 5.26974 5.31331 5.38162 5.43963 5.46289 5.47819 5.53636 5.61015 5.65663 6.24194 6.67333 6.71940 7.27727 8.84849 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042946 B = 0.003066 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.826639 B = 9129.114367 C = 9472.098531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.149 4.149 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.111 4.111 7 C -0.074 4.074 8 H 0.126 0.874 9 C 0.457 3.543 10 O -0.542 6.542 11 O -0.358 6.358 12 C 0.073 3.927 13 C -0.091 4.091 14 C -0.009 4.009 15 C -0.534 4.534 16 H 0.036 0.964 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.950 3.050 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.247 1.247 23 C -0.089 4.089 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.268 0.732 43 H 0.058 0.942 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.869 8.927 16.863 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.148 4.148 7 C -0.093 4.093 8 H 0.143 0.857 9 C 0.302 3.698 10 O -0.432 6.432 11 O -0.274 6.274 12 C 0.000 4.000 13 C -0.129 4.129 14 C -0.047 4.047 15 C -0.572 4.572 16 H 0.054 0.946 17 C -0.191 4.191 18 N -0.589 5.589 19 Si 0.773 3.227 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.171 1.171 23 C -0.127 4.127 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.929 8.715 16.508 29.567 hybrid contribution 0.288 -0.641 -1.207 1.396 sum -22.641 8.074 15.301 28.494 Atomic orbital electron populations 1.21844 0.93748 1.01873 1.02280 1.20531 0.95905 0.95787 0.93832 1.22023 1.01600 0.94607 1.02329 1.21645 0.95266 1.00506 0.97254 1.21575 0.95776 1.01456 0.96388 1.21552 1.01404 0.99157 0.92722 1.21301 0.97608 1.01113 0.89279 0.85673 1.24629 0.80189 0.76849 0.88118 1.90628 1.57372 1.47225 1.48011 1.86502 1.26100 1.70380 1.44449 1.23165 0.96136 0.96301 0.84438 1.21311 0.90921 1.01458 0.99201 1.19448 0.94572 0.96267 0.94381 1.21395 0.91766 1.36439 1.07627 0.94564 1.25996 0.95988 0.96269 1.00889 1.70051 1.10110 1.45895 1.32880 0.85667 0.79567 0.78542 0.78952 1.19041 1.20800 1.17086 1.21500 0.91151 1.01288 0.98747 0.91255 0.92849 0.92908 0.91835 0.92890 0.91316 0.90227 0.92207 0.90298 0.90375 0.92134 0.90711 0.91458 0.91320 0.91809 0.91823 0.95730 0.95818 0.92351 0.92297 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.47 71.98 0.61 -1.02 16 2 C -0.06 -0.77 0.77 -52.18 -0.04 -0.81 16 3 C -0.15 -1.65 7.78 71.98 0.56 -1.09 16 4 C -0.11 -1.22 4.73 30.59 0.14 -1.08 16 5 C -0.11 -1.36 5.65 30.60 0.17 -1.18 16 6 C -0.11 -1.89 5.14 30.60 0.16 -1.73 16 7 C -0.07 -1.47 2.36 -11.53 -0.03 -1.50 16 8 H 0.13 2.10 6.43 -2.39 -0.02 2.09 16 9 C 0.46 13.23 7.25 71.23 0.52 13.74 16 10 O -0.54 -18.74 15.73 21.95 0.35 -18.40 16 11 O -0.36 -11.35 10.12 -51.41 -0.52 -11.87 16 12 C 0.07 2.53 5.47 71.98 0.39 2.92 16 13 C -0.09 -3.63 5.53 30.59 0.17 -3.46 16 14 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 15 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 16 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 17 C 0.01 0.33 5.47 84.66 0.46 0.80 16 18 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 19 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 23 C -0.09 -1.64 3.30 30.61 0.10 -1.54 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.69 4.81 -2.39 -0.01 0.68 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.81 6.43 -2.39 -0.02 0.80 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 36 H 0.07 2.30 8.13 -2.39 -0.02 2.29 16 37 H 0.07 2.33 8.13 -2.39 -0.02 2.32 16 38 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 41 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 43 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 44 H 0.06 1.24 8.10 -2.38 -0.02 1.22 16 Total: -1.00 -67.87 342.52 6.48 -61.39 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.88 Total: 9.07 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.59 Total: -27.04 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.18 Total: -30.27 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -67.87 6.48 -61.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756267329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.959 kcal (2) G-P(sol) polarization free energy of solvation -67.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds