Wall clock time and date at job start Mon Mar 30 2020 00:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46972 * 119.99541 * 2 1 3 5 5 C 1.53002 * 109.47128 * 60.00146 * 4 2 1 6 6 C 1.52997 * 109.46978 * 59.99726 * 5 4 2 7 7 C 1.53002 * 109.47415 * 300.00098 * 6 5 4 8 8 H 1.09002 * 109.47070 * 300.00053 * 7 6 5 9 9 C 1.50701 * 109.47419 * 179.97438 * 7 6 5 10 10 O 1.20826 * 119.99939 * 240.00219 * 9 7 6 11 11 O 1.34230 * 120.00046 * 59.99846 * 9 7 6 12 12 C 1.45192 * 117.00018 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47109 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47278 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47248 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99944 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99893 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46936 * 59.99790 * 19 17 15 21 21 H 1.48493 * 109.47196 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47040 * 299.99691 * 19 17 15 23 23 C 1.52992 * 109.47224 * 239.99491 * 2 1 3 24 24 H 1.09004 * 109.47298 * 300.00283 * 1 2 3 25 25 H 1.09001 * 109.46993 * 59.99869 * 1 2 3 26 26 H 1.09004 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 29 29 H 1.09004 * 109.47261 * 59.99694 * 3 2 1 30 30 H 1.08996 * 109.47407 * 300.00487 * 4 2 1 31 31 H 1.09002 * 109.47596 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47097 * 299.99925 * 5 4 2 33 33 H 1.08998 * 109.47844 * 180.02562 * 5 4 2 34 34 H 1.09000 * 109.47140 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47497 * 60.00450 * 6 5 4 36 36 H 1.09001 * 109.47630 * 300.00318 * 12 11 9 37 37 H 1.08998 * 109.47321 * 60.00129 * 12 11 9 38 38 H 1.09005 * 109.47066 * 299.99718 * 13 12 11 39 39 H 1.08998 * 109.47698 * 59.99951 * 13 12 11 40 40 H 1.09001 * 109.47487 * 299.99960 * 14 13 12 41 41 H 1.09008 * 109.47307 * 59.99683 * 14 13 12 42 42 H 0.96999 * 119.99519 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.47103 * 180.02562 * 23 2 1 44 44 H 1.08998 * 109.46862 * 60.00859 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2494 6 6 2.0399 -2.8850 0.0002 7 6 1.5300 -2.1638 -1.2491 8 1 0.4400 -2.1638 -1.2491 9 6 2.0328 -2.8739 -2.4796 10 8 2.7275 -2.2863 -3.2746 11 8 1.7091 -4.1591 -2.6922 12 6 2.2292 -4.7791 -3.8977 13 6 1.7576 -6.2329 -3.9676 14 6 2.3062 -6.8865 -5.2376 15 6 1.8423 -8.3186 -5.3062 16 1 1.2182 -8.7222 -4.5226 17 6 2.2145 -9.1137 -6.3693 18 7 2.9741 -8.6221 -7.3239 19 14 1.6388 -10.8888 -6.4548 20 1 0.1545 -10.9270 -6.4805 21 1 2.1714 -11.5231 -7.6873 22 1 2.1324 -11.6270 -5.2646 23 6 2.0400 -0.7213 -1.2491 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -0.2074 2.1393 31 1 3.1299 -0.7208 1.2497 32 1 0.4399 -2.1637 1.2494 33 1 1.8928 -2.6774 2.1396 34 1 1.6763 -3.9125 0.0000 35 1 3.1300 -2.8850 0.0002 36 1 1.8658 -4.2372 -4.7708 37 1 3.3187 -4.7506 -3.8799 38 1 2.1208 -6.7751 -3.0945 39 1 0.6682 -6.2611 -3.9856 40 1 1.9435 -6.3445 -6.1110 41 1 3.3958 -6.8584 -5.2192 42 1 3.2363 -9.1816 -8.0716 43 1 3.1300 -0.7217 -1.2489 44 1 1.6767 -0.2075 -2.1391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756267331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:11 Heat of formation + Delta-G solvation = -139.070609 kcal Electronic energy + Delta-G solvation = -20657.482870 eV Core-core repulsion = 17572.863069 eV Total energy + Delta-G solvation = -3084.619801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74337 -39.15049 -36.38172 -34.03497 -33.59995 -31.73434 -31.25950 -27.62638 -27.22181 -26.57448 -24.49412 -22.89358 -21.86545 -20.45650 -20.09911 -18.72384 -17.27136 -16.59209 -16.29264 -15.99713 -15.16307 -14.91627 -14.64010 -14.47093 -14.08840 -13.91288 -13.39785 -13.15983 -12.76471 -12.39073 -12.18459 -12.13970 -12.01633 -11.96740 -11.72803 -11.66504 -11.28681 -11.25046 -10.94407 -10.76171 -10.65832 -10.62017 -10.42798 -10.33567 -10.29552 -10.09196 -9.70291 -9.46790 -9.16775 -8.38071 -6.03007 -4.06159 2.39613 2.93555 3.32641 3.36911 3.39522 4.32753 4.36857 4.41213 4.46467 4.72704 4.79863 4.99998 5.05208 5.08624 5.17020 5.22654 5.32762 5.37601 5.40180 5.47081 5.57913 5.60041 5.66193 5.66473 5.72708 5.75321 5.78484 5.88928 5.94703 5.99307 6.04081 6.06926 6.12614 6.24903 6.55370 6.55453 6.88306 7.00351 7.60695 7.72085 7.95111 8.00057 8.36593 8.99954 9.58008 11.08446 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.045292 B = 0.002897 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.060127 B = 9661.977468 C = 9977.496850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.081 4.081 8 H 0.108 0.892 9 C 0.459 3.541 10 O -0.513 6.513 11 O -0.357 6.357 12 C 0.067 3.933 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.092 4.092 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 18.116 18.034 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.100 4.100 8 H 0.126 0.874 9 C 0.301 3.699 10 O -0.402 6.402 11 O -0.274 6.274 12 C -0.006 4.006 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.474 18.205 17.589 25.552 hybrid contribution -0.143 -0.984 -0.412 1.077 sum -3.617 17.221 17.177 24.591 Atomic orbital electron populations 1.22016 0.94554 1.02185 1.01772 1.20545 0.95806 0.95226 0.94894 1.21845 1.01101 0.95099 1.01742 1.21641 1.00767 0.95373 0.97036 1.21580 1.01268 0.95441 0.97381 1.21530 1.01359 0.99692 0.92361 1.21124 1.02740 0.95134 0.90973 0.87406 1.23687 0.77771 0.81053 0.87340 1.90644 1.35755 1.67056 1.46720 1.86495 1.69574 1.25753 1.45552 1.23481 0.98780 0.95042 0.83266 1.21754 1.01092 0.89881 1.01873 1.19047 0.96511 0.95168 0.90576 1.21139 1.31701 0.96093 1.07099 0.92481 1.25035 0.95108 0.98700 0.95628 1.69961 1.36069 1.36541 1.10828 0.86601 0.79061 0.84648 0.77369 1.20175 1.21256 1.20170 1.21496 1.01541 0.92242 0.97720 0.92636 0.92586 0.91934 0.92575 0.92529 0.92621 0.91852 0.91807 0.91286 0.91454 0.90235 0.91395 0.91636 0.91630 0.92185 0.92187 0.96266 0.96264 0.92832 0.90954 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.78 37.16 0.29 -0.76 16 2 C -0.06 -0.50 0.77 -154.51 -0.12 -0.61 16 3 C -0.14 -0.98 8.47 37.16 0.31 -0.67 16 4 C -0.11 -0.79 4.73 -26.73 -0.13 -0.91 16 5 C -0.12 -0.88 5.65 -26.73 -0.15 -1.03 16 6 C -0.11 -1.08 5.14 -26.73 -0.14 -1.21 16 7 C -0.08 -0.89 2.36 -91.77 -0.22 -1.10 16 8 H 0.11 1.05 6.43 -51.93 -0.33 0.72 16 9 C 0.46 7.12 7.26 36.01 0.26 7.38 16 10 O -0.51 -9.40 15.73 -18.75 -0.29 -9.69 16 11 O -0.36 -6.10 10.12 -39.26 -0.40 -6.50 16 12 C 0.07 1.28 5.47 37.16 0.20 1.48 16 13 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 19 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.09 -0.93 3.30 -26.74 -0.09 -1.02 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.44 4.81 -51.93 -0.25 0.19 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -31.09 346.13 -8.29 -39.38 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -8.06 Total: -4.73 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.47 Total: -14.02 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.69 Total: -16.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.09 -8.29 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756267331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.691 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds