Wall clock time and date at job start Mon Mar 30 2020 00:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46972 * 119.99541 * 2 1 3 5 5 C 1.53002 * 109.47128 * 60.00146 * 4 2 1 6 6 C 1.52997 * 109.46978 * 59.99726 * 5 4 2 7 7 C 1.53002 * 109.47415 * 300.00098 * 6 5 4 8 8 H 1.09002 * 109.47070 * 300.00053 * 7 6 5 9 9 C 1.50701 * 109.47419 * 179.97438 * 7 6 5 10 10 O 1.20826 * 119.99939 * 240.00219 * 9 7 6 11 11 O 1.34230 * 120.00046 * 59.99846 * 9 7 6 12 12 C 1.45192 * 117.00018 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47109 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47278 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47248 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99944 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99893 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46936 * 59.99790 * 19 17 15 21 21 H 1.48493 * 109.47196 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47040 * 299.99691 * 19 17 15 23 23 C 1.52992 * 109.47224 * 239.99491 * 2 1 3 24 24 H 1.09004 * 109.47298 * 300.00283 * 1 2 3 25 25 H 1.09001 * 109.46993 * 59.99869 * 1 2 3 26 26 H 1.09004 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 29 29 H 1.09004 * 109.47261 * 59.99694 * 3 2 1 30 30 H 1.08996 * 109.47407 * 300.00487 * 4 2 1 31 31 H 1.09002 * 109.47596 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47097 * 299.99925 * 5 4 2 33 33 H 1.08998 * 109.47844 * 180.02562 * 5 4 2 34 34 H 1.09000 * 109.47140 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47497 * 60.00450 * 6 5 4 36 36 H 1.09001 * 109.47630 * 300.00318 * 12 11 9 37 37 H 1.08998 * 109.47321 * 60.00129 * 12 11 9 38 38 H 1.09005 * 109.47066 * 299.99718 * 13 12 11 39 39 H 1.08998 * 109.47698 * 59.99951 * 13 12 11 40 40 H 1.09001 * 109.47487 * 299.99960 * 14 13 12 41 41 H 1.09008 * 109.47307 * 59.99683 * 14 13 12 42 42 H 0.96999 * 119.99519 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.47103 * 180.02562 * 23 2 1 44 44 H 1.08998 * 109.46862 * 60.00859 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2494 6 6 2.0399 -2.8850 0.0002 7 6 1.5300 -2.1638 -1.2491 8 1 0.4400 -2.1638 -1.2491 9 6 2.0328 -2.8739 -2.4796 10 8 2.7275 -2.2863 -3.2746 11 8 1.7091 -4.1591 -2.6922 12 6 2.2292 -4.7791 -3.8977 13 6 1.7576 -6.2329 -3.9676 14 6 2.3062 -6.8865 -5.2376 15 6 1.8423 -8.3186 -5.3062 16 1 1.2182 -8.7222 -4.5226 17 6 2.2145 -9.1137 -6.3693 18 7 2.9741 -8.6221 -7.3239 19 14 1.6388 -10.8888 -6.4548 20 1 0.1545 -10.9270 -6.4805 21 1 2.1714 -11.5231 -7.6873 22 1 2.1324 -11.6270 -5.2646 23 6 2.0400 -0.7213 -1.2491 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -0.2074 2.1393 31 1 3.1299 -0.7208 1.2497 32 1 0.4399 -2.1637 1.2494 33 1 1.8928 -2.6774 2.1396 34 1 1.6763 -3.9125 0.0000 35 1 3.1300 -2.8850 0.0002 36 1 1.8658 -4.2372 -4.7708 37 1 3.3187 -4.7506 -3.8799 38 1 2.1208 -6.7751 -3.0945 39 1 0.6682 -6.2611 -3.9856 40 1 1.9435 -6.3445 -6.1110 41 1 3.3958 -6.8584 -5.2192 42 1 3.2363 -9.1816 -8.0716 43 1 3.1300 -0.7217 -1.2489 44 1 1.6767 -0.2075 -2.1391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756267331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:10 Heat of formation + Delta-G solvation = -154.230078 kcal Electronic energy + Delta-G solvation = -20658.140234 eV Core-core repulsion = 17572.863069 eV Total energy + Delta-G solvation = -3085.277165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89217 -40.07470 -37.81556 -35.95847 -34.43715 -33.62897 -32.09904 -29.08313 -28.16915 -27.29916 -25.87730 -24.46007 -22.58610 -22.19081 -21.38507 -19.46609 -18.70552 -18.31318 -17.66656 -17.41007 -16.51064 -16.14585 -15.60267 -15.52136 -15.26387 -14.86126 -14.40230 -14.29763 -14.00588 -13.79498 -13.77246 -13.46779 -12.93178 -12.80259 -12.79178 -12.57381 -12.53653 -12.35949 -12.32112 -12.09078 -12.01181 -11.93827 -11.73090 -11.52311 -11.43595 -11.31865 -11.10158 -10.99442 -10.90700 -10.58008 -8.22795 -6.34806 1.12344 1.40769 1.44393 1.52130 1.64854 2.40799 3.10925 3.46218 3.62245 3.66847 3.96052 3.99984 4.04073 4.06920 4.18138 4.29284 4.38370 4.41449 4.42567 4.56965 4.70565 4.76837 4.79787 4.84720 4.91104 4.99362 5.05397 5.06101 5.09351 5.14138 5.17011 5.22541 5.27281 5.37950 5.39239 5.45153 5.48315 5.54193 5.61332 5.66005 5.78342 6.17490 6.67537 6.81068 7.34841 8.89366 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.045292 B = 0.002897 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.060127 B = 9661.977468 C = 9977.496850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.114 4.114 6 C -0.111 4.111 7 C -0.073 4.073 8 H 0.127 0.873 9 C 0.455 3.545 10 O -0.545 6.545 11 O -0.356 6.356 12 C 0.076 3.924 13 C -0.092 4.092 14 C 0.026 3.974 15 C -0.545 4.545 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.265 1.265 23 C -0.090 4.090 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.067 0.933 40 H -0.004 1.004 41 H -0.005 1.005 42 H 0.265 0.735 43 H 0.057 0.943 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 17.991 20.245 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.092 4.092 8 H 0.145 0.855 9 C 0.300 3.700 10 O -0.435 6.435 11 O -0.272 6.272 12 C 0.003 3.997 13 C -0.130 4.130 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.190 1.190 23 C -0.128 4.128 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.905 18.093 19.827 27.286 hybrid contribution 0.333 -0.871 -1.111 1.450 sum -4.572 17.222 18.716 25.841 Atomic orbital electron populations 1.22022 0.93698 1.02464 1.02343 1.20530 0.96426 0.95311 0.93771 1.21845 1.00896 0.94719 1.02292 1.21647 1.00555 0.95249 0.97226 1.21572 1.01898 0.95321 0.96322 1.21557 1.00893 0.99699 0.92681 1.21299 1.03657 0.95047 0.89165 0.85532 1.24718 0.76908 0.80181 0.88178 1.90633 1.37301 1.67418 1.48141 1.86492 1.69528 1.26846 1.44330 1.23114 0.98334 0.94121 0.84161 1.21448 1.01207 0.90837 0.99508 1.18932 0.95062 0.94959 0.92160 1.21598 1.31900 0.97218 1.07532 0.91577 1.26037 0.95034 1.03784 0.95107 1.70102 1.37311 1.38486 1.11559 0.85424 0.78982 0.78502 0.77697 1.18975 1.20916 1.18960 1.21497 1.00636 0.91821 0.98803 0.91208 0.92958 0.91767 0.92972 0.92904 0.91152 0.90110 0.92286 0.90182 0.90262 0.90561 0.92260 0.92188 0.92234 0.91411 0.91405 0.98607 0.98617 0.92648 0.92440 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.78 71.98 0.56 -1.15 16 2 C -0.06 -0.81 0.77 -52.19 -0.04 -0.85 16 3 C -0.14 -1.74 8.47 71.98 0.61 -1.13 16 4 C -0.11 -1.27 4.73 30.60 0.14 -1.13 16 5 C -0.11 -1.38 5.65 30.59 0.17 -1.20 16 6 C -0.11 -1.96 5.14 30.59 0.16 -1.81 16 7 C -0.07 -1.53 2.36 -11.54 -0.03 -1.56 16 8 H 0.13 2.23 6.43 -2.39 -0.02 2.21 16 9 C 0.46 14.13 7.26 71.24 0.52 14.65 16 10 O -0.54 -20.41 15.73 21.97 0.35 -20.06 16 11 O -0.36 -12.03 10.12 -51.41 -0.52 -12.55 16 12 C 0.08 2.95 5.47 71.98 0.39 3.34 16 13 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16 14 C 0.03 1.40 4.97 29.85 0.15 1.54 16 15 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 17 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 18 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 19 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.09 -1.76 3.30 30.59 0.10 -1.66 16 24 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.72 4.81 -2.39 -0.01 0.71 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.83 6.43 -2.39 -0.02 0.81 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 37 H 0.06 2.35 8.13 -2.39 -0.02 2.34 16 38 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 39 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 44 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -67.11 346.13 6.67 -60.44 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.94 Total: 8.34 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 3.60 Total: -25.22 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.17 Total: -32.61 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.11 6.67 -60.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756267331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.792 kcal (2) G-P(sol) polarization free energy of solvation -67.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds