Wall clock time and date at job start Mon Mar 30 2020 00:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.52998 * 109.47073 * 240.00207 * 2 1 3 5 5 C 1.53001 * 109.47344 * 292.92466 * 4 2 1 6 6 C 1.50701 * 112.84735 * 295.06769 * 5 4 2 7 7 O 1.20829 * 120.00093 * 353.78159 * 6 5 4 8 8 O 1.34224 * 119.99991 * 173.78660 * 6 5 4 9 9 C 1.45209 * 116.99749 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46764 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46684 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46717 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99969 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99560 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00389 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99698 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46867 * 60.00570 * 16 14 12 18 18 H 1.48500 * 109.47060 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47129 * 300.00583 * 16 14 12 20 20 C 1.53778 * 113.61699 * 163.75960 * 5 4 2 21 21 C 1.53785 * 87.08089 * 220.01770 * 20 5 4 22 22 C 1.53782 * 87.08049 * 25.43273 * 21 20 5 23 23 H 1.08997 * 109.46810 * 70.13115 * 1 2 3 24 24 H 1.08996 * 109.47157 * 190.13016 * 1 2 3 25 25 H 1.09002 * 109.46808 * 310.13389 * 1 2 3 26 26 H 1.08992 * 109.46961 * 120.00366 * 2 1 3 27 27 H 1.08996 * 109.47126 * 300.00234 * 3 2 1 28 28 H 1.09002 * 109.46707 * 60.00501 * 3 2 1 29 29 H 1.09002 * 109.46417 * 180.02562 * 3 2 1 30 30 H 1.09011 * 109.47452 * 52.91968 * 4 2 1 31 31 H 1.08995 * 109.47237 * 172.92170 * 4 2 1 32 32 H 1.08999 * 109.47267 * 299.99664 * 9 8 6 33 33 H 1.09000 * 109.46969 * 60.00179 * 9 8 6 34 34 H 1.08999 * 109.46976 * 299.99869 * 10 9 8 35 35 H 1.09000 * 109.47210 * 60.00353 * 10 9 8 36 36 H 1.08999 * 109.47161 * 299.99576 * 11 10 9 37 37 H 1.09000 * 109.47155 * 60.00140 * 11 10 9 38 38 H 0.96994 * 120.00363 * 179.97438 * 15 14 12 39 39 H 1.08998 * 113.61759 * 334.56421 * 20 5 4 40 40 H 1.09007 * 113.61523 * 105.46874 * 20 5 4 41 41 H 1.09001 * 113.61177 * 270.88128 * 21 20 5 42 42 H 1.09002 * 113.61363 * 139.98461 * 21 20 5 43 43 H 1.09003 * 113.61204 * 220.02221 * 22 21 20 44 44 H 1.08995 * 113.61234 * 89.11767 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6803 -2.2059 -1.1637 6 6 2.3781 -2.9126 -0.0303 7 8 3.2128 -2.3311 0.6218 8 8 2.0726 -4.1882 0.2548 9 6 2.7848 -4.8055 1.3594 10 6 2.3054 -6.2482 1.5325 11 6 3.0554 -6.8985 2.6968 12 6 2.5827 -8.3193 2.8677 13 1 1.8237 -8.7185 2.2113 14 6 3.1201 -9.1097 3.8614 15 7 4.0447 -8.6237 4.6604 16 14 2.5348 -10.8710 4.0729 17 1 2.7988 -11.6333 2.8261 18 1 3.2626 -11.5022 5.2030 19 1 1.0775 -10.8775 4.3579 20 6 1.7840 -2.9434 -2.5091 21 6 0.4983 -3.6872 -2.1109 22 6 0.1678 -2.4775 -1.2208 23 1 -0.3633 0.3493 -0.9665 24 1 -0.3633 -1.0116 0.1807 25 1 -0.3633 0.6624 0.7857 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.5770 -0.2857 -2.1348 31 1 3.1226 -0.6129 -1.3148 32 1 3.8545 -4.8004 1.1502 33 1 2.5908 -4.2463 2.2747 34 1 1.2357 -6.2529 1.7419 35 1 2.4990 -6.8077 0.6173 36 1 4.1251 -6.8938 2.4878 37 1 2.8613 -6.3389 3.6118 38 1 4.4225 -9.1796 5.3598 39 1 1.6615 -2.2923 -3.3746 40 1 2.6573 -3.5912 -2.5857 41 1 0.6802 -4.6046 -1.5510 42 1 -0.1997 -3.8255 -2.9367 43 1 -0.2637 -2.7492 -0.2574 44 1 -0.3966 -1.6990 -1.7342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757144547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:08 Heat of formation + Delta-G solvation = -100.628228 kcal Electronic energy + Delta-G solvation = -21063.275495 eV Core-core repulsion = 17980.322680 eV Total energy + Delta-G solvation = -3082.952815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12927 -38.60631 -36.51878 -35.46550 -33.94067 -31.67113 -29.04676 -27.74283 -27.23126 -25.50975 -24.66696 -23.11683 -21.83999 -20.39688 -19.98045 -19.12267 -17.22001 -16.53200 -16.24668 -16.06532 -15.32967 -14.75999 -14.48934 -14.44907 -14.09010 -13.89725 -13.29246 -12.75906 -12.55929 -12.42886 -12.28389 -12.14525 -12.05815 -11.90834 -11.87761 -11.57183 -11.13969 -10.95209 -10.83073 -10.68357 -10.64156 -10.56953 -10.39427 -10.31970 -10.15329 -9.95873 -9.71396 -9.47386 -9.17503 -8.38682 -6.03473 -4.06731 2.32816 2.89236 3.32262 3.36599 3.39139 4.25641 4.31639 4.41822 4.46521 4.68695 4.82636 4.91705 4.97176 5.18982 5.32319 5.33906 5.46308 5.47980 5.54447 5.57841 5.58820 5.61838 5.64830 5.71322 5.74126 5.78987 5.85271 5.88656 6.00506 6.02584 6.10647 6.20092 6.29593 6.32603 6.54219 6.56978 6.87216 6.99175 7.59927 7.71237 7.94489 8.00740 8.35841 8.99345 9.57518 11.07950 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.003452 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.473400 B = 8110.381857 C = 8533.959279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.085 4.085 6 C 0.480 3.520 7 O -0.507 6.507 8 O -0.353 6.353 9 C 0.067 3.933 10 C -0.108 4.108 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.119 4.119 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 16.979 -14.368 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.121 4.121 3 C -0.201 4.201 4 C -0.122 4.122 5 C -0.086 4.086 6 C 0.323 3.677 7 O -0.395 6.395 8 O -0.269 6.269 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.158 4.158 21 C -0.182 4.182 22 C -0.156 4.156 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.975 17.067 -13.983 23.140 hybrid contribution -0.002 -0.917 0.416 1.007 sum -6.977 16.149 -13.568 22.216 Atomic orbital electron populations 1.22218 0.95525 1.02511 1.01324 1.21170 0.95631 0.96245 0.99072 1.21796 1.01073 0.95867 1.01315 1.21450 1.01872 0.90680 0.98217 1.21700 0.97844 0.95523 0.93544 1.22867 0.80408 0.80775 0.83698 1.90631 1.31926 1.66790 1.50131 1.86498 1.62715 1.26344 1.51337 1.23498 0.95872 0.95113 0.86127 1.21749 1.01185 0.90019 1.01569 1.19047 0.95430 0.95204 0.91615 1.21136 1.22324 0.96935 1.15663 0.92483 1.25028 0.95006 0.98637 0.95770 1.69952 1.27479 1.36773 1.19164 0.86607 0.78867 0.84571 0.77669 1.20169 1.21256 1.20168 1.22915 0.99655 0.98775 0.94441 1.23013 0.96790 0.98642 0.99742 1.23096 0.92883 0.98528 1.01113 0.92830 0.91518 0.93079 0.90203 0.93027 0.92847 0.92685 0.90773 0.91041 0.91648 0.91653 0.92195 0.92199 0.96277 0.96275 0.92827 0.88958 0.90874 0.88352 0.91143 0.90459 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 7.79 37.16 0.29 -1.12 16 2 C -0.10 -1.08 2.77 -90.62 -0.25 -1.33 16 3 C -0.14 -1.31 9.17 37.16 0.34 -0.97 16 4 C -0.08 -0.85 3.86 -26.73 -0.10 -0.96 16 5 C -0.08 -0.95 0.93 -154.85 -0.14 -1.10 16 6 C 0.48 7.41 6.71 36.01 0.24 7.65 16 7 O -0.51 -9.14 14.54 -18.75 -0.27 -9.41 16 8 O -0.35 -5.86 8.33 -39.24 -0.33 -6.18 16 9 C 0.07 1.25 5.47 37.16 0.20 1.45 16 10 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 C -0.12 -1.15 7.21 -25.92 -0.19 -1.34 16 21 C -0.14 -1.40 7.63 -25.92 -0.20 -1.60 16 22 C -0.12 -1.13 4.62 -25.92 -0.12 -1.25 16 23 H 0.05 0.40 7.76 -51.93 -0.40 0.00 16 24 H 0.07 0.62 4.91 -51.93 -0.26 0.36 16 25 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 26 H 0.08 1.08 6.33 -51.93 -0.33 0.75 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.58 8.01 -51.92 -0.42 0.17 16 31 H 0.07 0.79 8.03 -51.93 -0.42 0.38 16 32 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 40 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.10 1.16 6.86 -51.93 -0.36 0.80 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.81 7.17 -51.93 -0.37 0.44 16 44 H 0.09 0.71 6.95 -51.93 -0.36 0.34 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -30.69 346.00 -8.23 -38.92 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.94 Total: -2.91 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.63 Total: -16.00 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.60 Total: -15.59 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.69 -8.23 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757144547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.710 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds