Wall clock time and date at job start Mon Mar 30 2020 00:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.52998 * 109.47073 * 240.00207 * 2 1 3 5 5 C 1.53001 * 109.47344 * 292.92466 * 4 2 1 6 6 C 1.50701 * 112.84735 * 295.06769 * 5 4 2 7 7 O 1.20829 * 120.00093 * 353.78159 * 6 5 4 8 8 O 1.34224 * 119.99991 * 173.78660 * 6 5 4 9 9 C 1.45209 * 116.99749 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46764 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46684 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46717 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99969 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99560 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00389 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99698 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46867 * 60.00570 * 16 14 12 18 18 H 1.48500 * 109.47060 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47129 * 300.00583 * 16 14 12 20 20 C 1.53778 * 113.61699 * 163.75960 * 5 4 2 21 21 C 1.53785 * 87.08089 * 220.01770 * 20 5 4 22 22 C 1.53782 * 87.08049 * 25.43273 * 21 20 5 23 23 H 1.08997 * 109.46810 * 70.13115 * 1 2 3 24 24 H 1.08996 * 109.47157 * 190.13016 * 1 2 3 25 25 H 1.09002 * 109.46808 * 310.13389 * 1 2 3 26 26 H 1.08992 * 109.46961 * 120.00366 * 2 1 3 27 27 H 1.08996 * 109.47126 * 300.00234 * 3 2 1 28 28 H 1.09002 * 109.46707 * 60.00501 * 3 2 1 29 29 H 1.09002 * 109.46417 * 180.02562 * 3 2 1 30 30 H 1.09011 * 109.47452 * 52.91968 * 4 2 1 31 31 H 1.08995 * 109.47237 * 172.92170 * 4 2 1 32 32 H 1.08999 * 109.47267 * 299.99664 * 9 8 6 33 33 H 1.09000 * 109.46969 * 60.00179 * 9 8 6 34 34 H 1.08999 * 109.46976 * 299.99869 * 10 9 8 35 35 H 1.09000 * 109.47210 * 60.00353 * 10 9 8 36 36 H 1.08999 * 109.47161 * 299.99576 * 11 10 9 37 37 H 1.09000 * 109.47155 * 60.00140 * 11 10 9 38 38 H 0.96994 * 120.00363 * 179.97438 * 15 14 12 39 39 H 1.08998 * 113.61759 * 334.56421 * 20 5 4 40 40 H 1.09007 * 113.61523 * 105.46874 * 20 5 4 41 41 H 1.09001 * 113.61177 * 270.88128 * 21 20 5 42 42 H 1.09002 * 113.61363 * 139.98461 * 21 20 5 43 43 H 1.09003 * 113.61204 * 220.02221 * 22 21 20 44 44 H 1.08995 * 113.61234 * 89.11767 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6803 -2.2059 -1.1637 6 6 2.3781 -2.9126 -0.0303 7 8 3.2128 -2.3311 0.6218 8 8 2.0726 -4.1882 0.2548 9 6 2.7848 -4.8055 1.3594 10 6 2.3054 -6.2482 1.5325 11 6 3.0554 -6.8985 2.6968 12 6 2.5827 -8.3193 2.8677 13 1 1.8237 -8.7185 2.2113 14 6 3.1201 -9.1097 3.8614 15 7 4.0447 -8.6237 4.6604 16 14 2.5348 -10.8710 4.0729 17 1 2.7988 -11.6333 2.8261 18 1 3.2626 -11.5022 5.2030 19 1 1.0775 -10.8775 4.3579 20 6 1.7840 -2.9434 -2.5091 21 6 0.4983 -3.6872 -2.1109 22 6 0.1678 -2.4775 -1.2208 23 1 -0.3633 0.3493 -0.9665 24 1 -0.3633 -1.0116 0.1807 25 1 -0.3633 0.6624 0.7857 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.5770 -0.2857 -2.1348 31 1 3.1226 -0.6129 -1.3148 32 1 3.8545 -4.8004 1.1502 33 1 2.5908 -4.2463 2.2747 34 1 1.2357 -6.2529 1.7419 35 1 2.4990 -6.8077 0.6173 36 1 4.1251 -6.8938 2.4878 37 1 2.8613 -6.3389 3.6118 38 1 4.4225 -9.1796 5.3598 39 1 1.6615 -2.2923 -3.3746 40 1 2.6573 -3.5912 -2.5857 41 1 0.6802 -4.6046 -1.5510 42 1 -0.1997 -3.8255 -2.9367 43 1 -0.2637 -2.7492 -0.2574 44 1 -0.3966 -1.6990 -1.7342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757144547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:07 Heat of formation + Delta-G solvation = -115.632652 kcal Electronic energy + Delta-G solvation = -21063.926136 eV Core-core repulsion = 17980.322680 eV Total energy + Delta-G solvation = -3083.603455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23079 -39.69372 -37.85965 -36.37761 -35.85868 -33.67195 -29.88691 -29.10297 -28.44888 -26.28218 -26.02181 -24.62474 -22.93733 -22.20113 -20.80497 -20.25842 -18.73668 -18.19268 -17.65574 -17.31237 -16.52548 -16.16410 -15.76969 -15.60654 -15.25506 -14.78569 -14.64106 -14.15281 -13.91533 -13.79806 -13.45777 -13.31016 -13.07264 -12.87759 -12.79125 -12.73002 -12.54394 -12.48909 -12.33630 -12.11979 -12.00496 -11.68263 -11.58763 -11.44947 -11.35925 -11.33726 -11.18681 -11.03006 -10.77589 -10.58688 -8.23221 -6.35418 1.09990 1.40333 1.44024 1.51720 1.63245 2.40356 3.10449 3.39275 3.49249 3.55397 3.89712 3.93982 3.95462 4.02575 4.09282 4.18920 4.34692 4.39264 4.58635 4.75529 4.76176 4.78193 4.81809 4.82603 4.86720 4.88114 4.96998 5.02529 5.04439 5.05838 5.09663 5.17434 5.28255 5.34717 5.36753 5.46219 5.50565 5.55570 5.60147 5.62207 5.77467 6.16689 6.70947 6.80441 7.34291 8.88922 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.003452 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.473400 B = 8110.381857 C = 8533.959279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.141 4.141 4 C -0.081 4.081 5 C -0.091 4.091 6 C 0.473 3.527 7 O -0.539 6.539 8 O -0.350 6.350 9 C 0.077 3.923 10 C -0.090 4.090 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 C -0.113 4.113 21 C -0.146 4.146 22 C -0.109 4.109 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.067 0.933 36 H -0.005 1.005 37 H -0.005 1.005 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 17.314 -16.750 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.124 4.124 3 C -0.198 4.198 4 C -0.118 4.118 5 C -0.092 4.092 6 C 0.318 3.682 7 O -0.428 6.428 8 O -0.266 6.266 9 C 0.003 3.997 10 C -0.128 4.128 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.150 4.150 21 C -0.183 4.183 22 C -0.146 4.146 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.058 17.409 -16.384 25.565 hybrid contribution 0.678 -0.948 1.166 1.648 sum -8.380 16.462 -15.218 23.933 Atomic orbital electron populations 1.22196 0.93965 1.02344 1.02756 1.21155 0.96968 0.96625 0.97700 1.21774 1.00416 0.95212 1.02389 1.21500 1.01223 0.89790 0.99293 1.21897 0.98908 0.95815 0.92577 1.23959 0.80056 0.79928 0.84296 1.90618 1.33559 1.67130 1.51540 1.86512 1.62338 1.27442 1.50288 1.23098 0.95549 0.94211 0.86830 1.21428 1.00721 0.90936 0.99708 1.18930 0.94600 0.94992 0.92570 1.21592 1.22635 0.98016 1.16030 0.91569 1.26034 0.94961 1.03648 0.95290 1.70095 1.28781 1.38702 1.19847 0.85425 0.78723 0.78497 0.77967 1.18950 1.20906 1.18952 1.23014 0.98983 0.98704 0.94276 1.22981 0.97496 0.97578 1.00268 1.23166 0.91379 0.99277 1.00811 0.90309 0.92080 0.93133 0.94256 0.90834 0.92864 0.93759 0.87183 0.92660 0.92390 0.92458 0.91467 0.91443 0.98664 0.98685 0.92645 0.85493 0.92322 0.91027 0.88651 0.91865 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 7.79 71.98 0.56 -1.85 16 2 C -0.11 -2.12 2.77 -10.79 -0.03 -2.15 16 3 C -0.14 -2.39 9.17 71.98 0.66 -1.73 16 4 C -0.08 -1.46 3.86 30.59 0.12 -1.34 16 5 C -0.09 -1.90 0.93 -52.40 -0.05 -1.95 16 6 C 0.47 14.90 6.71 71.24 0.48 15.38 16 7 O -0.54 -20.36 14.54 21.95 0.32 -20.04 16 8 O -0.35 -11.86 8.33 -51.36 -0.43 -12.29 16 9 C 0.08 2.99 5.47 71.98 0.39 3.38 16 10 C -0.09 -3.84 5.53 30.60 0.17 -3.67 16 11 C 0.03 1.41 4.97 29.85 0.15 1.56 16 12 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 13 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 16 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 C -0.11 -1.86 7.21 31.12 0.22 -1.63 16 21 C -0.15 -2.47 7.63 31.12 0.24 -2.23 16 22 C -0.11 -1.79 4.62 31.12 0.14 -1.65 16 23 H 0.08 0.83 7.76 -2.39 -0.02 0.81 16 24 H 0.06 1.02 4.91 -2.39 -0.01 1.00 16 25 H 0.05 0.78 8.11 -2.39 -0.02 0.76 16 26 H 0.04 1.10 6.33 -2.39 -0.02 1.09 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 1.23 8.01 -2.38 -0.02 1.21 16 31 H 0.05 1.18 8.03 -2.39 -0.02 1.16 16 32 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 33 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.13 1.26 8.05 -2.39 -0.02 1.24 16 40 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 41 H 0.07 1.61 6.86 -2.39 -0.02 1.60 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.24 7.17 -2.39 -0.02 1.22 16 44 H 0.13 1.29 6.95 -2.39 -0.02 1.28 16 Total: -1.00 -68.53 346.00 6.90 -61.64 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.94 Total: 10.13 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 3.75 Total: -28.47 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.28 Total: -57.22 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.11 Total: -32.33 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.53 6.90 -61.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757144547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.996 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds