Wall clock time and date at job start Mon Mar 30 2020 00:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46913 * 2 1 4 4 C 1.50698 * 109.46999 * 119.99727 * 2 1 3 5 5 O 1.20827 * 120.00241 * 113.78605 * 4 2 1 6 6 O 1.34230 * 120.00185 * 293.78375 * 4 2 1 7 7 C 1.45202 * 117.00118 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47110 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47038 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46980 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99877 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99608 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00589 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99718 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47152 * 59.99972 * 14 12 10 16 16 H 1.48503 * 109.47217 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47385 * 300.00053 * 14 12 10 18 18 C 1.52999 * 109.47119 * 239.99765 * 2 1 3 19 19 C 1.54880 * 110.75556 * 177.40850 * 18 2 1 20 20 C 1.54264 * 104.19857 * 203.74263 * 19 18 2 21 21 C 1.53876 * 106.59801 * 23.61294 * 20 19 18 22 22 C 1.54272 * 106.59755 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47347 * 299.99954 * 1 2 3 24 24 H 1.09001 * 109.47361 * 59.99826 * 1 2 3 25 25 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46664 * 184.84216 * 3 2 1 27 27 H 1.08997 * 109.46787 * 304.84069 * 3 2 1 28 28 H 1.08998 * 109.47057 * 64.84183 * 3 2 1 29 29 H 1.09005 * 109.47092 * 300.00159 * 7 6 4 30 30 H 1.09003 * 109.47014 * 60.00213 * 7 6 4 31 31 H 1.09005 * 109.47250 * 300.00034 * 8 7 6 32 32 H 1.09003 * 109.47031 * 60.00196 * 8 7 6 33 33 H 1.09000 * 109.46629 * 299.99828 * 9 8 7 34 34 H 1.09003 * 109.47145 * 60.00149 * 9 8 7 35 35 H 0.96994 * 120.00315 * 179.97438 * 13 12 10 36 36 H 1.09000 * 110.66947 * 300.85126 * 18 2 1 37 37 H 1.09004 * 110.49172 * 322.42424 * 19 18 2 38 38 H 1.09007 * 110.48524 * 85.06531 * 19 18 2 39 39 H 1.08995 * 110.03340 * 264.33174 * 20 19 18 40 40 H 1.09000 * 110.03329 * 142.89187 * 20 19 18 41 41 H 1.09005 * 110.03133 * 240.72006 * 21 20 19 42 42 H 1.08996 * 110.07443 * 119.30260 * 21 20 19 43 43 H 1.08996 * 110.48787 * 217.71472 * 22 21 20 44 44 H 1.09002 * 110.59770 * 95.12235 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.6316 -1.7540 1.1233 6 8 1.8141 -0.1836 2.4457 7 6 2.3258 -0.9225 3.5861 8 6 1.9826 -0.1730 4.8750 9 6 2.5224 -0.9513 6.0767 10 6 2.1839 -0.2134 7.3463 11 1 1.6380 0.7174 7.3007 12 6 2.5702 -0.7271 8.5660 13 7 3.2345 -1.8607 8.6216 14 14 2.1512 0.1879 10.1398 15 1 0.6769 0.3212 10.2573 16 1 2.6739 -0.5681 11.3062 17 1 2.7692 1.5379 10.1070 18 6 2.0400 -0.7213 -1.2492 19 6 3.5870 -0.6822 -1.3124 20 6 3.9091 -0.8595 -2.8106 21 6 2.6623 -0.3987 -3.5858 22 6 1.6258 0.0420 -2.5315 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1265 1.4437 -0.0867 27 1 1.6075 1.9807 -0.8434 28 1 1.7492 1.9307 0.9302 29 1 1.8718 -1.9133 3.6104 30 1 3.4079 -1.0207 3.4995 31 1 2.4362 0.8179 4.8509 32 1 0.9004 -0.0753 4.9614 33 1 2.0691 -1.9423 6.1009 34 1 3.6046 -1.0487 5.9901 35 1 3.5066 -2.2219 9.4797 36 1 1.6752 -1.7481 -1.2765 37 1 3.9595 0.2771 -0.9531 38 1 4.0134 -1.4999 -0.7312 39 1 4.1166 -1.9075 -3.0264 40 1 4.7667 -0.2446 -3.0835 41 1 2.2648 -1.2232 -4.1777 42 1 2.9142 0.4396 -4.2353 43 1 0.6212 -0.2468 -2.8402 44 1 1.6791 1.1184 -2.3679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757840612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:00 Heat of formation + Delta-G solvation = -129.392673 kcal Electronic energy + Delta-G solvation = -20898.827033 eV Core-core repulsion = 17814.626899 eV Total energy + Delta-G solvation = -3084.200135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80718 -38.66755 -36.27630 -34.71723 -33.90420 -31.64810 -29.02815 -28.01519 -27.48684 -27.07305 -24.36970 -22.93443 -21.06073 -20.43182 -20.29009 -18.72939 -17.08259 -16.73931 -16.21403 -16.18476 -15.55703 -15.19326 -14.47208 -14.33704 -13.96280 -13.79969 -13.39654 -13.13897 -12.49586 -12.35905 -12.11350 -12.02472 -11.98585 -11.80181 -11.61598 -11.31517 -11.17308 -11.16466 -10.93630 -10.72457 -10.64750 -10.60345 -10.55588 -10.42441 -10.31266 -10.04234 -9.69867 -9.45579 -9.16615 -8.38184 -6.02984 -4.06170 2.42831 2.92418 3.32570 3.36854 3.39459 4.25451 4.37862 4.43634 4.50211 4.78186 4.80516 4.81393 5.12194 5.24535 5.32483 5.32809 5.37527 5.44861 5.47846 5.55256 5.59600 5.61656 5.65093 5.67967 5.71891 5.75136 5.82792 5.86779 5.96943 6.02915 6.09492 6.11563 6.25409 6.32720 6.55670 6.57611 6.89411 7.00834 7.60689 7.72166 7.95131 8.02883 8.36632 8.99932 9.58032 11.08473 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044706 B = 0.003071 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.164847 B = 9116.841618 C = 9391.618640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C -0.149 4.149 4 C 0.464 3.536 5 O -0.509 6.509 6 O -0.356 6.356 7 C 0.068 3.932 8 C -0.108 4.108 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.057 0.943 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.072 4.072 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.122 4.122 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 5.025 -23.921 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C -0.205 4.205 4 C 0.307 3.693 5 O -0.397 6.397 6 O -0.272 6.272 7 C -0.005 4.005 8 C -0.146 4.146 9 C -0.013 4.013 10 C -0.560 4.560 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.090 4.090 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.159 4.159 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.984 4.575 -23.778 24.397 hybrid contribution -0.054 0.164 1.030 1.044 sum -3.038 4.739 -22.748 23.434 Atomic orbital electron populations 1.21867 0.91726 1.02865 1.03426 1.20469 0.97616 0.96645 0.90025 1.22043 1.01860 0.93211 1.03430 1.23546 0.76634 0.83803 0.85317 1.90623 1.38427 1.23324 1.87360 1.86489 1.72615 1.52768 1.15329 1.23474 0.98813 0.95476 0.82779 1.21751 1.01517 0.99763 0.91544 1.19045 0.96488 0.95388 0.90361 1.21140 1.36233 1.07725 0.90940 0.92486 1.25028 0.95108 0.95027 0.99285 1.69951 1.38597 1.19274 1.25571 0.86608 0.78766 0.79795 0.82544 1.20176 1.21255 1.20170 1.22007 0.96057 0.99292 0.91651 1.22595 0.95070 1.02691 0.96131 1.22116 0.97635 1.01133 0.95275 1.22116 0.95629 1.00629 0.97742 1.22531 0.98678 1.00508 0.94186 0.91023 0.90998 0.92127 0.91609 0.90987 0.90884 0.91687 0.91671 0.92208 0.92207 0.96284 0.96275 0.92829 0.89817 0.91344 0.90442 0.91981 0.92056 0.92032 0.91979 0.91589 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.28 37.16 0.31 -1.04 16 2 C -0.05 -0.52 0.55 -155.66 -0.08 -0.60 16 3 C -0.15 -1.43 7.74 37.16 0.29 -1.14 16 4 C 0.46 7.18 6.27 36.00 0.23 7.40 16 5 O -0.51 -9.12 14.28 -18.75 -0.27 -9.39 16 6 O -0.36 -6.04 9.83 -39.26 -0.39 -6.42 16 7 C 0.07 1.28 5.47 37.16 0.20 1.48 16 8 C -0.11 -2.28 5.53 -26.73 -0.15 -2.42 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 11 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 14 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.07 -0.73 1.80 -88.64 -0.16 -0.89 16 19 C -0.13 -1.37 5.40 -25.08 -0.14 -1.51 16 20 C -0.12 -1.08 6.80 -25.61 -0.17 -1.26 16 21 C -0.12 -0.93 6.80 -25.61 -0.17 -1.10 16 22 C -0.12 -0.94 5.25 -25.08 -0.13 -1.07 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.52 7.32 -51.93 -0.38 0.14 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.64 5.87 -51.93 -0.30 0.34 16 27 H 0.07 0.53 6.30 -51.93 -0.33 0.20 16 28 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 29 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.07 0.72 5.68 -51.93 -0.29 0.42 16 38 H 0.08 1.01 7.01 -51.93 -0.36 0.65 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.45 8.01 -51.93 -0.42 0.04 16 44 H 0.07 0.52 5.78 -51.93 -0.30 0.22 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -30.89 343.34 -8.13 -39.02 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.83 Total: -3.48 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.53 Total: -15.25 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.65 Total: -15.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.89 -8.13 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757840612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.375 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds