Wall clock time and date at job start Mon Mar 30 2020 00:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46913 * 2 1 4 4 C 1.50698 * 109.46999 * 119.99727 * 2 1 3 5 5 O 1.20827 * 120.00241 * 113.78605 * 4 2 1 6 6 O 1.34230 * 120.00185 * 293.78375 * 4 2 1 7 7 C 1.45202 * 117.00118 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47110 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47038 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46980 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99877 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99608 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00589 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99718 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47152 * 59.99972 * 14 12 10 16 16 H 1.48503 * 109.47217 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47385 * 300.00053 * 14 12 10 18 18 C 1.52999 * 109.47119 * 239.99765 * 2 1 3 19 19 C 1.54880 * 110.75556 * 177.40850 * 18 2 1 20 20 C 1.54264 * 104.19857 * 203.74263 * 19 18 2 21 21 C 1.53876 * 106.59801 * 23.61294 * 20 19 18 22 22 C 1.54272 * 106.59755 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47347 * 299.99954 * 1 2 3 24 24 H 1.09001 * 109.47361 * 59.99826 * 1 2 3 25 25 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46664 * 184.84216 * 3 2 1 27 27 H 1.08997 * 109.46787 * 304.84069 * 3 2 1 28 28 H 1.08998 * 109.47057 * 64.84183 * 3 2 1 29 29 H 1.09005 * 109.47092 * 300.00159 * 7 6 4 30 30 H 1.09003 * 109.47014 * 60.00213 * 7 6 4 31 31 H 1.09005 * 109.47250 * 300.00034 * 8 7 6 32 32 H 1.09003 * 109.47031 * 60.00196 * 8 7 6 33 33 H 1.09000 * 109.46629 * 299.99828 * 9 8 7 34 34 H 1.09003 * 109.47145 * 60.00149 * 9 8 7 35 35 H 0.96994 * 120.00315 * 179.97438 * 13 12 10 36 36 H 1.09000 * 110.66947 * 300.85126 * 18 2 1 37 37 H 1.09004 * 110.49172 * 322.42424 * 19 18 2 38 38 H 1.09007 * 110.48524 * 85.06531 * 19 18 2 39 39 H 1.08995 * 110.03340 * 264.33174 * 20 19 18 40 40 H 1.09000 * 110.03329 * 142.89187 * 20 19 18 41 41 H 1.09005 * 110.03133 * 240.72006 * 21 20 19 42 42 H 1.08996 * 110.07443 * 119.30260 * 21 20 19 43 43 H 1.08996 * 110.48787 * 217.71472 * 22 21 20 44 44 H 1.09002 * 110.59770 * 95.12235 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.6316 -1.7540 1.1233 6 8 1.8141 -0.1836 2.4457 7 6 2.3258 -0.9225 3.5861 8 6 1.9826 -0.1730 4.8750 9 6 2.5224 -0.9513 6.0767 10 6 2.1839 -0.2134 7.3463 11 1 1.6380 0.7174 7.3007 12 6 2.5702 -0.7271 8.5660 13 7 3.2345 -1.8607 8.6216 14 14 2.1512 0.1879 10.1398 15 1 0.6769 0.3212 10.2573 16 1 2.6739 -0.5681 11.3062 17 1 2.7692 1.5379 10.1070 18 6 2.0400 -0.7213 -1.2492 19 6 3.5870 -0.6822 -1.3124 20 6 3.9091 -0.8595 -2.8106 21 6 2.6623 -0.3987 -3.5858 22 6 1.6258 0.0420 -2.5315 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1265 1.4437 -0.0867 27 1 1.6075 1.9807 -0.8434 28 1 1.7492 1.9307 0.9302 29 1 1.8718 -1.9133 3.6104 30 1 3.4079 -1.0207 3.4995 31 1 2.4362 0.8179 4.8509 32 1 0.9004 -0.0753 4.9614 33 1 2.0691 -1.9423 6.1009 34 1 3.6046 -1.0487 5.9901 35 1 3.5066 -2.2219 9.4797 36 1 1.6752 -1.7481 -1.2765 37 1 3.9595 0.2771 -0.9531 38 1 4.0134 -1.4999 -0.7312 39 1 4.1166 -1.9075 -3.0264 40 1 4.7667 -0.2446 -3.0835 41 1 2.2648 -1.2232 -4.1777 42 1 2.9142 0.4396 -4.2353 43 1 0.6212 -0.2468 -2.8402 44 1 1.6791 1.1184 -2.3679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757840612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:59 Heat of formation + Delta-G solvation = -144.641046 kcal Electronic energy + Delta-G solvation = -20899.488252 eV Core-core repulsion = 17814.626899 eV Total energy + Delta-G solvation = -3084.861354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97911 -39.64992 -37.66887 -36.00099 -35.44981 -33.64081 -29.74210 -29.20253 -28.55105 -28.22822 -25.83502 -24.45376 -22.19095 -22.13136 -21.09427 -19.70036 -18.70646 -18.13781 -17.68401 -17.55022 -16.52056 -16.38259 -16.07206 -15.74992 -14.94446 -14.74966 -14.50344 -14.16178 -14.11211 -13.81698 -13.64845 -13.20234 -13.04915 -12.80580 -12.76971 -12.53967 -12.41098 -12.37239 -12.12846 -11.98836 -11.97105 -11.84812 -11.67551 -11.48945 -11.43752 -11.33621 -11.28129 -11.11596 -10.99711 -10.58382 -8.22956 -6.35079 1.17597 1.40532 1.44179 1.51930 1.65677 2.40579 3.10732 3.39172 3.57850 3.67826 3.86616 3.95764 4.01979 4.04570 4.09758 4.26452 4.37704 4.54676 4.59422 4.67717 4.75565 4.76309 4.76931 4.79924 4.83569 4.89206 4.93727 5.00759 5.05515 5.09732 5.13741 5.16842 5.23062 5.36015 5.37937 5.44331 5.51963 5.56351 5.58961 5.60928 5.77978 6.17224 6.71976 6.80894 7.34614 8.89224 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044706 B = 0.003071 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.164847 B = 9116.841618 C = 9391.618640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.147 4.147 4 C 0.458 3.542 5 O -0.539 6.539 6 O -0.354 6.354 7 C 0.077 3.923 8 C -0.092 4.092 9 C 0.026 3.974 10 C -0.545 4.545 11 H 0.066 0.934 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.072 4.072 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.114 4.114 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.067 0.933 33 H -0.005 1.005 34 H -0.005 1.005 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 7.294 -25.290 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.042 4.042 3 C -0.204 4.204 4 C 0.302 3.698 5 O -0.429 6.429 6 O -0.271 6.271 7 C 0.004 3.996 8 C -0.129 4.129 9 C -0.011 4.011 10 C -0.583 4.583 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.091 4.091 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.159 4.159 22 C -0.151 4.151 23 H 0.085 0.915 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.349 6.857 -25.170 26.447 hybrid contribution 0.411 -0.606 1.408 1.587 sum -3.938 6.251 -23.762 24.884 Atomic orbital electron populations 1.21913 0.90070 1.02919 1.04810 1.20668 0.98794 0.97147 0.87634 1.22082 1.01791 0.91996 1.04488 1.24686 0.75766 0.83671 0.85670 1.90617 1.39828 1.24878 1.87550 1.86488 1.72600 1.52471 1.15518 1.23087 0.98353 0.94996 0.83203 1.21441 1.01617 0.99310 0.90561 1.18927 0.94933 0.94852 0.92359 1.21597 1.36372 1.08262 0.92025 0.91571 1.26032 0.94752 0.95861 1.03296 1.70093 1.39696 1.21010 1.26657 0.85428 0.79026 0.78600 0.77568 1.18961 1.20906 1.18952 1.22012 0.95510 0.98861 0.92684 1.22586 0.95628 1.01430 0.97256 1.22114 0.98941 1.01124 0.93895 1.22123 0.94642 1.01420 0.97687 1.22537 0.99457 1.00861 0.92244 0.91460 0.87773 0.92795 0.92047 0.87783 0.91586 0.92375 0.92381 0.91442 0.91434 0.98668 0.98661 0.92642 0.91561 0.91081 0.93840 0.92601 0.91180 0.91589 0.90329 0.90074 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.28 71.98 0.60 -1.76 16 2 C -0.04 -0.87 0.55 -52.93 -0.03 -0.89 16 3 C -0.15 -2.48 7.74 71.98 0.56 -1.92 16 4 C 0.46 14.28 6.27 71.24 0.45 14.73 16 5 O -0.54 -20.11 14.28 21.96 0.31 -19.80 16 6 O -0.35 -12.07 9.83 -51.42 -0.51 -12.57 16 7 C 0.08 3.01 5.47 71.98 0.39 3.40 16 8 C -0.09 -3.90 5.53 30.60 0.17 -3.73 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 11 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 12 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 13 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 14 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 C -0.07 -1.40 1.80 -9.51 -0.02 -1.41 16 19 C -0.13 -2.82 5.40 31.66 0.17 -2.65 16 20 C -0.12 -2.01 6.80 31.32 0.21 -1.80 16 21 C -0.12 -1.48 6.80 31.32 0.21 -1.27 16 22 C -0.11 -1.38 5.25 31.66 0.17 -1.22 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.10 1.10 7.32 -2.39 -0.02 1.08 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.10 5.87 -2.39 -0.01 1.08 16 27 H 0.10 1.10 6.30 -2.39 -0.02 1.09 16 28 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 29 H 0.06 2.32 8.13 -2.38 -0.02 2.30 16 30 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 31 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 37 H 0.07 1.45 5.68 -2.39 -0.01 1.44 16 38 H 0.04 1.21 7.01 -2.38 -0.02 1.19 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.79 8.01 -2.39 -0.02 0.77 16 44 H 0.09 0.84 5.78 -2.39 -0.01 0.82 16 Total: -1.00 -68.01 343.34 6.79 -61.22 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.95 Total: 9.66 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.72 Total: -27.52 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.19 Total: -32.37 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.01 6.79 -61.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757840612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.421 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds