Wall clock time and date at job start Mon Mar 30 2020 00:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47396 * 2 1 4 4 C 1.52992 * 109.47110 * 184.17720 * 3 2 1 5 5 C 1.53008 * 109.47126 * 184.21429 * 4 3 2 6 6 C 1.52995 * 109.47283 * 64.17276 * 3 2 1 7 7 C 1.53003 * 109.47235 * 59.99791 * 6 3 2 8 8 C 1.50703 * 109.47120 * 304.17697 * 3 2 1 9 9 O 1.20817 * 120.00426 * 124.82034 * 8 3 2 10 10 O 1.34236 * 119.99539 * 304.81625 * 8 3 2 11 11 C 1.45202 * 116.99923 * 185.10562 * 10 8 3 12 12 C 1.53000 * 109.47133 * 184.81946 * 11 10 8 13 13 C 1.50702 * 115.54552 * 305.29259 * 12 11 10 14 14 H 1.08004 * 119.99564 * 275.51980 * 13 12 11 15 15 C 1.37866 * 120.00282 * 95.24931 * 13 12 11 16 16 N 1.31517 * 120.00550 * 175.64162 * 15 13 12 17 17 Si 1.86806 * 119.99853 * 355.64103 * 15 13 12 18 18 H 1.48493 * 109.47156 * 95.02720 * 17 15 13 19 19 H 1.48500 * 109.47016 * 215.02790 * 17 15 13 20 20 H 1.48503 * 109.46844 * 335.02205 * 17 15 13 21 21 C 1.52994 * 117.50002 * 90.96070 * 12 11 10 22 22 C 1.52994 * 117.49721 * 159.62574 * 12 11 10 23 23 H 1.08999 * 109.47449 * 59.99644 * 1 2 3 24 24 H 1.08998 * 109.47378 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46998 * 300.00409 * 1 2 3 26 26 H 1.09000 * 109.46532 * 239.99676 * 2 1 3 27 27 H 1.08997 * 109.46813 * 119.99959 * 2 1 3 28 28 H 1.09002 * 109.46794 * 304.20808 * 4 3 2 29 29 H 1.09002 * 109.47482 * 64.21163 * 4 3 2 30 30 H 1.08996 * 109.46821 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.46819 * 299.99863 * 5 4 3 32 32 H 1.09001 * 109.47066 * 60.00081 * 5 4 3 33 33 H 1.08996 * 109.47672 * 180.02562 * 6 3 2 34 34 H 1.09005 * 109.47337 * 300.00361 * 6 3 2 35 35 H 1.09005 * 109.46493 * 60.00053 * 7 6 3 36 36 H 1.08994 * 109.47375 * 179.97438 * 7 6 3 37 37 H 1.08998 * 109.47292 * 300.00212 * 7 6 3 38 38 H 1.09000 * 109.47284 * 64.81508 * 11 10 8 39 39 H 1.09006 * 109.47127 * 304.81522 * 11 10 8 40 40 H 0.97000 * 120.00087 * 179.97438 * 16 15 13 41 41 H 1.09001 * 117.49938 * 214.99594 * 21 12 11 42 42 H 1.08999 * 117.49970 * 0.02774 * 21 12 11 43 43 H 1.09000 * 117.50402 * 359.97399 * 22 12 11 44 44 H 1.09006 * 117.49828 * 144.97579 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5664 1.4436 -0.1051 5 6 4.0838 2.8797 0.0006 6 6 1.6176 2.1328 1.2984 7 6 2.2115 1.3818 2.4919 8 6 1.4550 2.1821 -1.1755 9 8 0.8438 3.2093 -0.9995 10 8 1.6132 1.6997 -2.4181 11 6 1.1233 2.5204 -3.5112 12 6 1.2804 1.7604 -4.8297 13 6 2.6703 1.2620 -5.1309 14 1 3.3894 1.9177 -5.5992 15 6 3.0256 -0.0293 -4.8036 16 7 4.2090 -0.4919 -5.1430 17 14 1.8260 -1.1220 -3.8780 18 1 1.0664 -1.9538 -4.8454 19 1 2.5761 -2.0043 -2.9485 20 1 0.8821 -0.2762 -3.1041 21 6 0.1047 0.8974 -5.2921 22 6 0.4199 2.2112 -6.0117 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9867 0.8457 0.7036 29 1 3.8650 1.0194 -1.0637 30 1 5.1712 2.8805 -0.0738 31 1 3.6634 3.4777 -0.8080 32 1 3.7852 3.3039 0.9593 33 1 1.9806 3.1605 1.2982 34 1 0.5302 2.1319 1.3732 35 1 3.2989 1.3827 2.4170 36 1 1.9109 1.8739 3.4168 37 1 1.8481 0.3542 2.4919 38 1 1.6962 3.4467 -3.5551 39 1 0.0705 2.7517 -3.3484 40 1 4.4590 -1.4003 -4.9124 41 1 0.3365 -0.0308 -5.8143 42 1 -0.7809 0.8714 -4.6572 43 1 -0.2584 3.0490 -5.8500 44 1 0.8592 2.1475 -7.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761231404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:48 Heat of formation + Delta-G solvation = -80.109693 kcal Electronic energy + Delta-G solvation = -22744.996507 eV Core-core repulsion = 19662.933443 eV Total energy + Delta-G solvation = -3082.063064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50270 -37.81930 -36.67472 -35.29396 -32.18301 -32.03870 -30.88445 -27.72964 -26.56648 -25.23348 -24.15041 -22.04916 -21.87730 -21.53083 -19.09274 -18.43235 -16.81310 -16.51269 -16.17309 -15.84625 -15.33776 -14.83304 -14.27880 -13.97187 -13.72178 -13.07422 -12.88888 -12.73683 -12.66472 -12.58748 -12.26182 -12.16922 -11.93581 -11.62868 -11.46978 -11.28621 -11.16038 -11.02725 -10.73793 -10.61924 -10.41578 -10.26456 -10.23045 -10.14956 -9.89836 -9.72545 -9.36108 -9.08038 -8.54173 -8.45189 -6.06700 -4.11497 2.76998 3.17333 3.39552 3.51821 3.63578 4.52903 4.68059 4.73318 4.86165 4.93365 5.20861 5.24538 5.27658 5.37992 5.45400 5.49690 5.57261 5.61944 5.68837 5.76057 5.81353 5.88156 5.92241 5.98270 6.02501 6.05913 6.13537 6.15574 6.21008 6.24077 6.29624 6.35742 6.39391 6.41172 6.42550 6.63635 6.64345 6.88070 7.04415 7.25970 7.73301 8.42018 8.48748 8.93068 9.57700 11.04038 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.007802 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.559031 B = 3587.883937 C = 3782.392148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.048 4.048 4 C -0.118 4.118 5 C -0.155 4.155 6 C -0.106 4.106 7 C -0.154 4.154 8 C 0.466 3.534 9 O -0.529 6.529 10 O -0.316 6.316 11 C 0.108 3.892 12 C -0.002 4.002 13 C -0.488 4.488 14 H 0.077 0.923 15 C 0.086 3.914 16 N -0.899 5.899 17 Si 0.879 3.121 18 H -0.292 1.292 19 H -0.297 1.297 20 H -0.233 1.233 21 C -0.200 4.200 22 C -0.170 4.170 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 1.882 12.600 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.049 4.049 4 C -0.155 4.155 5 C -0.212 4.212 6 C -0.143 4.143 7 C -0.211 4.211 8 C 0.310 3.690 9 O -0.419 6.419 10 O -0.231 6.231 11 C 0.035 3.965 12 C -0.003 4.003 13 C -0.525 4.525 14 H 0.095 0.905 15 C -0.117 4.117 16 N -0.535 5.535 17 Si 0.708 3.292 18 H -0.219 1.219 19 H -0.224 1.224 20 H -0.157 1.157 21 C -0.237 4.237 22 C -0.208 4.208 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.874 2.027 12.605 13.665 hybrid contribution -0.637 -0.577 0.273 0.902 sum -5.511 1.450 12.878 14.082 Atomic orbital electron populations 1.21874 0.95656 1.01914 1.01965 1.21698 0.96338 0.94077 1.03592 1.20618 0.97024 0.96017 0.91284 1.21650 0.91537 0.98248 1.04053 1.21861 1.01142 0.96379 1.01849 1.21491 1.01316 0.99708 0.91819 1.21900 1.01385 1.00573 0.97263 1.23528 0.76669 0.83414 0.85405 1.90564 1.39797 1.24928 1.86656 1.86781 1.73819 1.48250 1.14218 1.22760 0.96367 0.92898 0.84523 1.19374 0.93288 0.98610 0.89032 1.20126 0.93692 0.97999 1.40641 0.90533 1.24930 0.95031 0.97593 0.94113 1.69915 1.20719 1.16808 1.46106 0.86901 0.82066 0.79972 0.80248 1.21927 1.22441 1.15668 1.22997 1.00179 0.95406 1.05111 1.22893 1.03280 0.96577 0.98023 0.92709 0.92322 0.92359 0.90432 0.90414 0.90540 0.89766 0.92238 0.92742 0.92384 0.90742 0.91274 0.92139 0.92669 0.92262 0.91930 0.93647 0.92714 0.89272 0.90770 0.90810 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.35 37.16 0.35 -1.90 16 2 C -0.12 -1.78 4.62 -26.73 -0.12 -1.91 16 3 C -0.05 -0.75 0.31 -155.67 -0.05 -0.80 16 4 C -0.12 -1.75 4.50 -26.73 -0.12 -1.87 16 5 C -0.16 -2.19 9.25 37.16 0.34 -1.84 16 6 C -0.11 -1.39 3.56 -26.73 -0.10 -1.48 16 7 C -0.15 -1.56 9.21 37.16 0.34 -1.22 16 8 C 0.47 9.00 4.03 36.01 0.15 9.15 16 9 O -0.53 -10.89 15.64 -18.74 -0.29 -11.19 16 10 O -0.32 -6.91 6.75 -39.27 -0.27 -7.18 16 11 C 0.11 2.35 5.43 37.16 0.20 2.55 16 12 C 0.00 -0.05 1.37 -155.67 -0.21 -0.26 16 13 C -0.49 -13.47 9.21 -34.44 -0.32 -13.79 16 14 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 15 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 16 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 17 Si 0.88 21.65 22.43 -169.99 -3.81 17.84 16 18 H -0.29 -7.23 7.07 56.52 0.40 -6.83 16 19 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.23 -5.40 5.11 56.52 0.29 -5.11 16 21 C -0.20 -4.27 7.24 -26.69 -0.19 -4.47 16 22 C -0.17 -3.42 9.96 -26.69 -0.27 -3.69 16 23 H 0.05 0.91 7.10 -51.93 -0.37 0.54 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.73 6.54 -51.92 -0.34 0.39 16 26 H 0.08 1.35 6.91 -51.93 -0.36 1.00 16 27 H 0.08 0.94 6.21 -51.93 -0.32 0.62 16 28 H 0.08 0.94 6.66 -51.93 -0.35 0.59 16 29 H 0.08 1.49 8.13 -51.93 -0.42 1.07 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.89 7.35 -51.93 -0.38 0.50 16 32 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 33 H 0.07 1.01 6.26 -51.93 -0.33 0.69 16 34 H 0.07 0.93 6.54 -51.93 -0.34 0.59 16 35 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.57 6.34 -51.93 -0.33 0.24 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 2.02 6.54 -51.93 -0.34 1.68 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -30.46 330.32 -6.30 -36.75 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.58 Total: 4.21 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -0.09 Total: -19.18 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.24 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.56 Total: -18.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -3.81 Total: 17.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.46 -6.30 -36.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761231404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.356 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds