Wall clock time and date at job start Mon Mar 30 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47396 * 2 1 4 4 C 1.52992 * 109.47110 * 184.17720 * 3 2 1 5 5 C 1.53008 * 109.47126 * 184.21429 * 4 3 2 6 6 C 1.52995 * 109.47283 * 64.17276 * 3 2 1 7 7 C 1.53003 * 109.47235 * 59.99791 * 6 3 2 8 8 C 1.50703 * 109.47120 * 304.17697 * 3 2 1 9 9 O 1.20817 * 120.00426 * 124.82034 * 8 3 2 10 10 O 1.34236 * 119.99539 * 304.81625 * 8 3 2 11 11 C 1.45202 * 116.99923 * 185.10562 * 10 8 3 12 12 C 1.53000 * 109.47133 * 184.81946 * 11 10 8 13 13 C 1.50702 * 115.54552 * 305.29259 * 12 11 10 14 14 H 1.08004 * 119.99564 * 275.51980 * 13 12 11 15 15 C 1.37866 * 120.00282 * 95.24931 * 13 12 11 16 16 N 1.31517 * 120.00550 * 175.64162 * 15 13 12 17 17 Si 1.86806 * 119.99853 * 355.64103 * 15 13 12 18 18 H 1.48493 * 109.47156 * 95.02720 * 17 15 13 19 19 H 1.48500 * 109.47016 * 215.02790 * 17 15 13 20 20 H 1.48503 * 109.46844 * 335.02205 * 17 15 13 21 21 C 1.52994 * 117.50002 * 90.96070 * 12 11 10 22 22 C 1.52994 * 117.49721 * 159.62574 * 12 11 10 23 23 H 1.08999 * 109.47449 * 59.99644 * 1 2 3 24 24 H 1.08998 * 109.47378 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46998 * 300.00409 * 1 2 3 26 26 H 1.09000 * 109.46532 * 239.99676 * 2 1 3 27 27 H 1.08997 * 109.46813 * 119.99959 * 2 1 3 28 28 H 1.09002 * 109.46794 * 304.20808 * 4 3 2 29 29 H 1.09002 * 109.47482 * 64.21163 * 4 3 2 30 30 H 1.08996 * 109.46821 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.46819 * 299.99863 * 5 4 3 32 32 H 1.09001 * 109.47066 * 60.00081 * 5 4 3 33 33 H 1.08996 * 109.47672 * 180.02562 * 6 3 2 34 34 H 1.09005 * 109.47337 * 300.00361 * 6 3 2 35 35 H 1.09005 * 109.46493 * 60.00053 * 7 6 3 36 36 H 1.08994 * 109.47375 * 179.97438 * 7 6 3 37 37 H 1.08998 * 109.47292 * 300.00212 * 7 6 3 38 38 H 1.09000 * 109.47284 * 64.81508 * 11 10 8 39 39 H 1.09006 * 109.47127 * 304.81522 * 11 10 8 40 40 H 0.97000 * 120.00087 * 179.97438 * 16 15 13 41 41 H 1.09001 * 117.49938 * 214.99594 * 21 12 11 42 42 H 1.08999 * 117.49970 * 0.02774 * 21 12 11 43 43 H 1.09000 * 117.50402 * 359.97399 * 22 12 11 44 44 H 1.09006 * 117.49828 * 144.97579 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5664 1.4436 -0.1051 5 6 4.0838 2.8797 0.0006 6 6 1.6176 2.1328 1.2984 7 6 2.2115 1.3818 2.4919 8 6 1.4550 2.1821 -1.1755 9 8 0.8438 3.2093 -0.9995 10 8 1.6132 1.6997 -2.4181 11 6 1.1233 2.5204 -3.5112 12 6 1.2804 1.7604 -4.8297 13 6 2.6703 1.2620 -5.1309 14 1 3.3894 1.9177 -5.5992 15 6 3.0256 -0.0293 -4.8036 16 7 4.2090 -0.4919 -5.1430 17 14 1.8260 -1.1220 -3.8780 18 1 1.0664 -1.9538 -4.8454 19 1 2.5761 -2.0043 -2.9485 20 1 0.8821 -0.2762 -3.1041 21 6 0.1047 0.8974 -5.2921 22 6 0.4199 2.2112 -6.0117 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9867 0.8457 0.7036 29 1 3.8650 1.0194 -1.0637 30 1 5.1712 2.8805 -0.0738 31 1 3.6634 3.4777 -0.8080 32 1 3.7852 3.3039 0.9593 33 1 1.9806 3.1605 1.2982 34 1 0.5302 2.1319 1.3732 35 1 3.2989 1.3827 2.4170 36 1 1.9109 1.8739 3.4168 37 1 1.8481 0.3542 2.4919 38 1 1.6962 3.4467 -3.5551 39 1 0.0705 2.7517 -3.3484 40 1 4.4590 -1.4003 -4.9124 41 1 0.3365 -0.0308 -5.8143 42 1 -0.7809 0.8714 -4.6572 43 1 -0.2584 3.0490 -5.8500 44 1 0.8592 2.1475 -7.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761231404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:47 Heat of formation + Delta-G solvation = -97.167695 kcal Electronic energy + Delta-G solvation = -22745.736198 eV Core-core repulsion = 19662.933443 eV Total energy + Delta-G solvation = -3082.802755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94794 -39.32779 -38.20384 -36.92606 -34.21548 -33.31934 -31.85062 -29.25542 -28.03546 -27.20179 -25.22819 -23.58240 -23.06861 -22.97798 -20.99478 -19.78158 -18.66805 -18.06539 -17.57819 -17.37322 -16.72135 -16.52563 -15.81460 -15.40124 -15.08752 -14.76231 -14.47412 -14.05773 -13.94638 -13.84999 -13.68296 -13.59677 -13.08417 -13.05340 -12.83107 -12.65796 -12.57758 -12.27584 -12.21572 -12.11084 -12.00957 -11.72580 -11.66773 -11.48985 -11.28020 -11.25573 -11.18371 -10.89259 -10.60301 -10.29293 -8.27323 -6.35697 1.26732 1.31033 1.41370 1.64939 1.90537 2.45104 3.07001 3.13457 3.53783 3.59163 3.72882 3.94616 4.04045 4.17352 4.18986 4.31536 4.33436 4.38470 4.39854 4.43499 4.48313 4.57178 4.63957 4.76374 4.77548 4.78839 4.85984 4.95901 4.97262 5.00226 5.09655 5.12651 5.18430 5.22753 5.23735 5.26722 5.33687 5.39558 5.60456 5.66515 5.72260 6.25826 6.68971 6.88632 7.37029 8.87260 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.007802 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.559031 B = 3587.883937 C = 3782.392148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.048 4.048 4 C -0.117 4.117 5 C -0.153 4.153 6 C -0.101 4.101 7 C -0.150 4.150 8 C 0.461 3.539 9 O -0.545 6.545 10 O -0.337 6.337 11 C 0.113 3.887 12 C -0.033 4.033 13 C -0.488 4.488 14 H 0.032 0.968 15 C 0.036 3.964 16 N -0.947 5.947 17 Si 0.937 3.063 18 H -0.290 1.290 19 H -0.297 1.297 20 H -0.213 1.213 21 C -0.193 4.193 22 C -0.149 4.149 23 H 0.026 0.974 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 1.531 15.224 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.049 4.049 4 C -0.154 4.154 5 C -0.210 4.210 6 C -0.138 4.138 7 C -0.207 4.207 8 C 0.307 3.693 9 O -0.437 6.437 10 O -0.253 6.253 11 C 0.039 3.961 12 C -0.034 4.034 13 C -0.525 4.525 14 H 0.050 0.950 15 C -0.162 4.162 16 N -0.586 5.586 17 Si 0.763 3.237 18 H -0.217 1.217 19 H -0.224 1.224 20 H -0.135 1.135 21 C -0.230 4.230 22 C -0.186 4.186 23 H 0.045 0.955 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.774 1.698 15.226 16.751 hybrid contribution 0.011 -0.363 -0.601 0.702 sum -6.763 1.336 14.625 16.168 Atomic orbital electron populations 1.21888 0.95079 1.02865 1.01496 1.21762 0.96891 0.93365 1.03828 1.20831 0.96977 0.96424 0.90626 1.21671 0.91494 0.98905 1.03335 1.21856 1.01680 0.95605 1.01821 1.21494 1.01326 0.99484 0.91503 1.21900 1.01662 1.00818 0.96298 1.24381 0.76118 0.83471 0.85359 1.90538 1.40659 1.25758 1.86712 1.86771 1.74314 1.48878 1.15298 1.22594 0.97205 0.92260 0.84013 1.19288 0.91603 1.01244 0.91239 1.20269 0.95408 0.97380 1.39480 0.95011 1.25704 0.96505 0.99101 0.94920 1.70047 1.22939 1.17393 1.48224 0.86004 0.80335 0.78251 0.79089 1.21733 1.22436 1.13506 1.23013 0.99700 0.95209 1.05090 1.22971 1.01975 0.97127 0.96503 0.95524 0.90704 0.90432 0.93321 0.86986 0.87187 0.93427 0.91198 0.95873 0.90070 0.91515 0.91545 0.91436 0.90953 0.91229 0.92809 0.91813 0.92683 0.90718 0.88149 0.87195 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.35 71.98 0.67 -3.36 16 2 C -0.12 -3.32 4.62 30.59 0.14 -3.17 16 3 C -0.05 -1.39 0.31 -52.93 -0.02 -1.41 16 4 C -0.12 -3.35 4.50 30.59 0.14 -3.21 16 5 C -0.15 -4.18 9.25 71.98 0.67 -3.51 16 6 C -0.10 -2.35 3.56 30.59 0.11 -2.24 16 7 C -0.15 -2.38 9.21 71.98 0.66 -1.72 16 8 C 0.46 17.58 4.03 71.24 0.29 17.87 16 9 O -0.55 -22.12 15.64 21.99 0.34 -21.78 16 10 O -0.34 -14.76 6.75 -51.48 -0.35 -15.11 16 11 C 0.11 4.87 5.43 71.98 0.39 5.26 16 12 C -0.03 -1.52 1.37 -52.93 -0.07 -1.59 16 13 C -0.49 -27.98 9.21 25.60 0.24 -27.75 16 14 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 15 C 0.04 2.09 5.47 84.65 0.46 2.55 16 16 N -0.95 -59.29 13.96 21.44 0.30 -58.99 16 17 Si 0.94 45.41 22.43 68.60 1.54 46.95 16 18 H -0.29 -13.86 7.07 99.48 0.70 -13.15 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.21 -9.49 5.11 99.48 0.51 -8.98 16 21 C -0.19 -7.89 7.24 30.62 0.22 -7.67 16 22 C -0.15 -5.71 9.96 30.62 0.30 -5.40 16 23 H 0.03 0.82 7.10 -2.39 -0.02 0.80 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.68 6.54 -2.38 -0.02 1.66 16 26 H 0.05 1.62 6.91 -2.39 -0.02 1.61 16 27 H 0.11 2.27 6.21 -2.39 -0.01 2.25 16 28 H 0.11 2.39 6.66 -2.39 -0.02 2.37 16 29 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.02 0.75 7.35 -2.39 -0.02 0.73 16 32 H 0.08 1.83 6.36 -2.39 -0.02 1.81 16 33 H 0.07 1.66 6.26 -2.39 -0.01 1.64 16 34 H 0.07 1.59 6.54 -2.38 -0.02 1.57 16 35 H 0.07 1.00 6.53 -2.38 -0.02 0.98 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.98 6.34 -2.39 -0.02 0.97 16 38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.49 7.92 -2.38 -0.02 2.47 16 40 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.07 3.28 6.54 -2.39 -0.02 3.26 16 42 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 43 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -69.05 330.32 6.80 -62.24 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.76 Total: 22.03 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 4.20 Total: -35.35 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.30 Total: -58.99 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: 0.00 Total: -36.88 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.54 Total: 46.95 kcal Total: -69.05 6.80 -62.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761231404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.923 kcal (2) G-P(sol) polarization free energy of solvation -69.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds