Wall clock time and date at job start Mon Mar 30 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.52999 * 109.47362 * 180.10446 * 3 2 1 5 5 H 1.08998 * 109.47205 * 55.92609 * 4 3 2 6 6 C 1.50702 * 109.47346 * 175.92712 * 4 3 2 7 7 O 1.20832 * 119.99797 * 25.44194 * 6 4 3 8 8 O 1.34228 * 120.00205 * 205.45175 * 6 4 3 9 9 C 1.45192 * 116.99999 * 185.46979 * 8 6 4 10 10 C 1.53008 * 109.47178 * 184.35595 * 9 8 6 11 11 C 1.50701 * 115.54567 * 305.77442 * 10 9 8 12 12 H 1.07995 * 119.99962 * 95.19491 * 11 10 9 13 13 C 1.37882 * 119.99930 * 275.19295 * 11 10 9 14 14 N 1.31509 * 120.00120 * 8.75754 * 13 11 10 15 15 Si 1.86799 * 119.99916 * 188.75844 * 13 11 10 16 16 H 1.48504 * 109.47187 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.46941 * 300.00192 * 15 13 11 18 18 H 1.48496 * 109.47252 * 60.00172 * 15 13 11 19 19 C 1.52992 * 117.49909 * 91.44368 * 10 9 8 20 20 C 1.52998 * 117.50108 * 160.10549 * 10 9 8 21 21 C 1.52996 * 109.47162 * 295.92520 * 4 3 2 22 22 C 1.53007 * 109.47397 * 174.14255 * 21 4 3 23 23 C 1.53003 * 109.47203 * 294.14084 * 21 4 3 24 24 H 1.09006 * 109.47374 * 299.99932 * 1 2 3 25 25 H 1.09004 * 109.47210 * 59.99928 * 1 2 3 26 26 H 1.09006 * 109.47461 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47296 * 239.99993 * 2 1 3 28 28 H 1.09004 * 109.47210 * 120.00072 * 2 1 3 29 29 H 1.09009 * 109.46976 * 60.10800 * 3 2 1 30 30 H 1.09002 * 109.47466 * 300.10674 * 3 2 1 31 31 H 1.08997 * 109.47800 * 64.35674 * 9 8 6 32 32 H 1.09000 * 109.47503 * 304.34984 * 9 8 6 33 33 H 0.97004 * 120.00224 * 356.26606 * 14 13 11 34 34 H 1.09008 * 117.49858 * 215.00103 * 19 10 9 35 35 H 1.08996 * 117.50386 * 0.02578 * 19 10 9 36 36 H 1.09004 * 117.49517 * 359.97437 * 20 10 9 37 37 H 1.08999 * 117.49985 * 144.96872 * 20 10 9 38 38 H 1.09004 * 109.47479 * 54.14017 * 21 4 3 39 39 H 1.08996 * 109.46857 * 64.25062 * 22 21 4 40 40 H 1.08991 * 109.47056 * 184.25574 * 22 21 4 41 41 H 1.08997 * 109.46334 * 304.25763 * 22 21 4 42 42 H 1.09004 * 109.47218 * 65.03042 * 23 21 4 43 43 H 1.09004 * 109.47282 * 185.03020 * 23 21 4 44 44 H 1.09001 * 109.46925 * 305.03005 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0026 5 1 3.9318 0.8672 -0.8548 6 6 4.0722 2.8597 -0.1035 7 8 3.3833 3.7738 0.2838 8 8 5.2846 3.1067 -0.6239 9 6 5.7541 4.4799 -0.5785 10 6 7.0944 4.5851 -1.3090 11 6 8.1681 3.6390 -0.8364 12 1 8.3190 2.6972 -1.3428 13 6 8.9577 3.9760 0.2425 14 7 8.6668 5.0358 0.9649 15 14 10.4408 2.9272 0.6783 16 1 11.1176 3.4978 1.8706 17 1 9.9968 1.5420 0.9773 18 1 11.3867 2.9076 -0.4663 19 6 7.0616 4.9286 -2.7995 20 6 7.5335 5.9717 -1.7835 21 6 4.0822 0.8110 1.2934 22 6 5.6050 0.6775 1.2287 23 6 3.6980 1.6980 2.4795 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6782 1.9558 0.8910 30 1 1.6751 1.9569 -0.8890 31 1 5.8812 4.7864 0.4597 32 1 5.0248 5.1295 -1.0624 33 1 7.9294 5.6109 0.7071 34 1 7.8167 4.4704 -3.4384 35 1 6.0852 5.0801 -3.2597 36 1 6.8673 6.8091 -1.5756 37 1 8.5989 6.2000 -1.7534 38 1 3.6359 -0.1757 1.4181 39 1 6.0549 1.6691 1.1801 40 1 5.9625 0.1595 2.1185 41 1 5.8824 0.1089 0.3411 42 1 2.6128 1.7208 2.5796 43 1 4.1387 1.2958 3.3917 44 1 4.0688 2.7092 2.3120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764654250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:35 Heat of formation + Delta-G solvation = -101.646022 kcal Electronic energy + Delta-G solvation = -21840.546099 eV Core-core repulsion = 18757.549149 eV Total energy + Delta-G solvation = -3082.996949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25712 -37.57844 -36.54586 -35.25400 -33.77338 -31.90636 -29.57761 -27.29479 -26.75078 -24.92080 -24.41639 -21.92648 -21.44792 -21.05081 -19.53105 -18.76528 -17.09333 -16.70133 -16.26503 -15.42474 -15.31448 -14.33487 -14.07559 -13.93153 -13.73656 -13.53415 -13.08431 -12.93883 -12.55114 -12.43607 -12.03697 -11.97411 -11.82230 -11.66917 -11.37770 -11.14059 -10.98389 -10.92180 -10.80854 -10.62819 -10.52127 -10.45072 -10.31249 -10.11900 -9.93507 -9.85045 -9.49496 -8.57673 -8.48261 -8.32907 -6.36666 -4.08601 2.75929 3.32369 3.42883 3.43913 3.62854 4.50120 4.66701 4.77697 4.87122 5.02493 5.06927 5.11971 5.23622 5.30650 5.42603 5.54480 5.61304 5.64942 5.71958 5.81255 5.81503 5.85761 5.92627 6.00895 6.05444 6.11966 6.12978 6.19895 6.22607 6.26387 6.30366 6.33038 6.45094 6.53123 6.55520 6.78137 6.80344 7.03595 7.17934 7.33205 8.20553 8.43275 8.44768 8.85468 9.64256 11.02209 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.005684 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.108476 B = 4924.688057 C = 5653.839183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.078 4.078 5 H 0.099 0.901 6 C 0.461 3.539 7 O -0.526 6.526 8 O -0.325 6.325 9 C 0.111 3.889 10 C 0.016 3.984 11 C -0.560 4.560 12 H 0.056 0.944 13 C 0.027 3.973 14 N -0.905 5.905 15 Si 1.065 2.935 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.288 1.288 19 C -0.192 4.192 20 C -0.170 4.170 21 C -0.083 4.083 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.272 0.728 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -9.155 -0.858 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.097 4.097 5 H 0.118 0.882 6 C 0.305 3.695 7 O -0.416 6.416 8 O -0.240 6.240 9 C 0.037 3.963 10 C 0.016 3.984 11 C -0.598 4.598 12 H 0.074 0.926 13 C -0.179 4.179 14 N -0.540 5.540 15 Si 0.893 3.107 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.229 4.229 20 C -0.208 4.208 21 C -0.102 4.102 22 C -0.213 4.213 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.146 -9.011 0.344 13.574 hybrid contribution -1.290 0.475 -1.172 1.807 sum -11.436 -8.536 -0.828 14.294 Atomic orbital electron populations 1.21759 0.95826 1.01393 1.01904 1.21584 0.95818 0.96451 1.02348 1.21547 0.92250 0.97114 1.03517 1.21163 0.96514 0.91005 1.01052 0.88233 1.23562 0.80310 0.91954 0.73714 1.90586 1.57895 1.47126 1.46020 1.86594 1.32142 1.33656 1.71608 1.22816 0.94795 0.77648 1.01061 1.19057 0.92549 0.95529 0.91312 1.21145 1.16242 1.04267 1.18103 0.92619 1.25772 1.00799 0.98583 0.92716 1.70770 1.31102 1.15123 1.36989 0.83600 0.75574 0.75241 0.76273 1.20850 1.21305 1.21412 1.22924 1.00358 1.05323 0.94281 1.22784 1.00746 0.92336 1.04887 1.21111 0.97297 0.99108 0.92650 1.21959 0.93767 1.04046 1.01537 1.21973 1.01236 1.00383 0.97531 0.92710 0.92797 0.92827 0.91854 0.91454 0.90448 0.91690 0.91824 0.94201 0.91725 0.89774 0.91416 0.91353 0.89195 0.89786 0.90716 0.92759 0.92229 0.92466 0.92429 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.15 0.37 -0.93 16 2 C -0.12 -1.20 5.68 -26.74 -0.15 -1.35 16 3 C -0.11 -1.33 4.02 -26.73 -0.11 -1.44 16 4 C -0.08 -1.14 2.09 -91.77 -0.19 -1.33 16 5 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 6 C 0.46 8.92 5.25 36.01 0.19 9.11 16 7 O -0.53 -11.15 15.04 -18.75 -0.28 -11.43 16 8 O -0.33 -7.22 8.88 -39.25 -0.35 -7.57 16 9 C 0.11 2.61 5.38 37.16 0.20 2.81 16 10 C 0.02 0.40 1.22 -155.66 -0.19 0.21 16 11 C -0.56 -15.22 8.55 -34.44 -0.29 -15.51 16 12 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 13 C 0.03 0.73 5.38 -17.82 -0.10 0.64 16 14 N -0.91 -26.32 13.56 55.43 0.75 -25.56 16 15 Si 1.06 24.58 29.91 -169.99 -5.08 19.50 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.19 -4.18 9.92 -26.70 -0.26 -4.44 16 20 C -0.17 -3.88 8.88 -26.70 -0.24 -4.11 16 21 C -0.08 -1.14 2.55 -90.62 -0.23 -1.37 16 22 C -0.16 -2.45 8.83 37.16 0.33 -2.13 16 23 C -0.15 -2.21 8.54 37.16 0.32 -1.89 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.61 6.42 -51.93 -0.33 0.28 16 29 H 0.08 1.02 6.39 -51.92 -0.33 0.69 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.62 7.58 -51.93 -0.39 1.23 16 32 H 0.04 0.89 7.92 -51.93 -0.41 0.48 16 33 H 0.27 7.87 6.08 -40.82 -0.25 7.62 16 34 H 0.08 1.81 8.14 -51.92 -0.42 1.38 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.08 0.93 6.28 -51.93 -0.33 0.60 16 39 H 0.07 1.48 6.83 -51.93 -0.35 1.13 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.73 6.75 -51.93 -0.35 0.38 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.05 6.39 -51.93 -0.33 0.72 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -29.80 349.23 -7.85 -37.64 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.78 Total: 3.91 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -0.36 Total: -21.74 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.75 Total: -25.56 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.63 Total: -19.00 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.80 -7.85 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764654250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.004 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds