Wall clock time and date at job start Mon Mar 30 2020 00:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.52999 * 109.47362 * 180.10446 * 3 2 1 5 5 H 1.08998 * 109.47205 * 55.92609 * 4 3 2 6 6 C 1.50702 * 109.47346 * 175.92712 * 4 3 2 7 7 O 1.20832 * 119.99797 * 25.44194 * 6 4 3 8 8 O 1.34228 * 120.00205 * 205.45175 * 6 4 3 9 9 C 1.45192 * 116.99999 * 185.46979 * 8 6 4 10 10 C 1.53008 * 109.47178 * 184.35595 * 9 8 6 11 11 C 1.50701 * 115.54567 * 305.77442 * 10 9 8 12 12 H 1.07995 * 119.99962 * 95.19491 * 11 10 9 13 13 C 1.37882 * 119.99930 * 275.19295 * 11 10 9 14 14 N 1.31509 * 120.00120 * 8.75754 * 13 11 10 15 15 Si 1.86799 * 119.99916 * 188.75844 * 13 11 10 16 16 H 1.48504 * 109.47187 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.46941 * 300.00192 * 15 13 11 18 18 H 1.48496 * 109.47252 * 60.00172 * 15 13 11 19 19 C 1.52992 * 117.49909 * 91.44368 * 10 9 8 20 20 C 1.52998 * 117.50108 * 160.10549 * 10 9 8 21 21 C 1.52996 * 109.47162 * 295.92520 * 4 3 2 22 22 C 1.53007 * 109.47397 * 174.14255 * 21 4 3 23 23 C 1.53003 * 109.47203 * 294.14084 * 21 4 3 24 24 H 1.09006 * 109.47374 * 299.99932 * 1 2 3 25 25 H 1.09004 * 109.47210 * 59.99928 * 1 2 3 26 26 H 1.09006 * 109.47461 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47296 * 239.99993 * 2 1 3 28 28 H 1.09004 * 109.47210 * 120.00072 * 2 1 3 29 29 H 1.09009 * 109.46976 * 60.10800 * 3 2 1 30 30 H 1.09002 * 109.47466 * 300.10674 * 3 2 1 31 31 H 1.08997 * 109.47800 * 64.35674 * 9 8 6 32 32 H 1.09000 * 109.47503 * 304.34984 * 9 8 6 33 33 H 0.97004 * 120.00224 * 356.26606 * 14 13 11 34 34 H 1.09008 * 117.49858 * 215.00103 * 19 10 9 35 35 H 1.08996 * 117.50386 * 0.02578 * 19 10 9 36 36 H 1.09004 * 117.49517 * 359.97437 * 20 10 9 37 37 H 1.08999 * 117.49985 * 144.96872 * 20 10 9 38 38 H 1.09004 * 109.47479 * 54.14017 * 21 4 3 39 39 H 1.08996 * 109.46857 * 64.25062 * 22 21 4 40 40 H 1.08991 * 109.47056 * 184.25574 * 22 21 4 41 41 H 1.08997 * 109.46334 * 304.25763 * 22 21 4 42 42 H 1.09004 * 109.47218 * 65.03042 * 23 21 4 43 43 H 1.09004 * 109.47282 * 185.03020 * 23 21 4 44 44 H 1.09001 * 109.46925 * 305.03005 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0026 5 1 3.9318 0.8672 -0.8548 6 6 4.0722 2.8597 -0.1035 7 8 3.3833 3.7738 0.2838 8 8 5.2846 3.1067 -0.6239 9 6 5.7541 4.4799 -0.5785 10 6 7.0944 4.5851 -1.3090 11 6 8.1681 3.6390 -0.8364 12 1 8.3190 2.6972 -1.3428 13 6 8.9577 3.9760 0.2425 14 7 8.6668 5.0358 0.9649 15 14 10.4408 2.9272 0.6783 16 1 11.1176 3.4978 1.8706 17 1 9.9968 1.5420 0.9773 18 1 11.3867 2.9076 -0.4663 19 6 7.0616 4.9286 -2.7995 20 6 7.5335 5.9717 -1.7835 21 6 4.0822 0.8110 1.2934 22 6 5.6050 0.6775 1.2287 23 6 3.6980 1.6980 2.4795 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6782 1.9558 0.8910 30 1 1.6751 1.9569 -0.8890 31 1 5.8812 4.7864 0.4597 32 1 5.0248 5.1295 -1.0624 33 1 7.9294 5.6109 0.7071 34 1 7.8167 4.4704 -3.4384 35 1 6.0852 5.0801 -3.2597 36 1 6.8673 6.8091 -1.5756 37 1 8.5989 6.2000 -1.7534 38 1 3.6359 -0.1757 1.4181 39 1 6.0549 1.6691 1.1801 40 1 5.9625 0.1595 2.1185 41 1 5.8824 0.1089 0.3411 42 1 2.6128 1.7208 2.5796 43 1 4.1387 1.2958 3.3917 44 1 4.0688 2.7092 2.3120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764654250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:34 Heat of formation + Delta-G solvation = -115.604272 kcal Electronic energy + Delta-G solvation = -21841.151374 eV Core-core repulsion = 18757.549149 eV Total energy + Delta-G solvation = -3083.602225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79551 -39.18702 -38.04150 -36.95094 -34.69233 -33.99086 -30.68935 -28.87293 -28.10111 -26.94797 -25.62180 -23.24437 -23.02811 -22.25293 -21.49966 -20.07412 -18.86849 -18.43898 -17.76963 -17.02955 -16.31748 -15.83256 -15.71853 -15.60308 -14.99059 -14.70696 -14.59659 -14.47409 -14.01022 -13.91304 -13.73195 -13.24037 -12.97283 -12.90655 -12.77455 -12.64316 -12.43119 -12.30852 -12.08459 -11.95363 -11.91175 -11.84826 -11.70486 -11.64339 -11.51478 -11.34358 -11.04202 -10.55051 -10.44414 -10.34889 -8.55217 -6.27094 1.20999 1.54454 1.61360 1.79459 1.80512 2.58590 3.16533 3.21299 3.53657 3.69619 3.72186 3.95955 4.04500 4.13061 4.16782 4.21770 4.28546 4.32642 4.43161 4.53220 4.54679 4.60187 4.68426 4.75411 4.77682 4.83462 4.93528 4.94077 4.96810 5.00737 5.06945 5.14570 5.18879 5.22711 5.35145 5.37306 5.38634 5.47067 5.52912 5.67733 6.14337 6.23678 6.67189 6.83141 7.52799 8.84443 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.005684 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.108476 B = 4924.688057 C = 5653.839183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.073 4.073 5 H 0.115 0.885 6 C 0.455 3.545 7 O -0.549 6.549 8 O -0.339 6.339 9 C 0.123 3.877 10 C -0.019 4.019 11 C -0.565 4.565 12 H 0.045 0.955 13 C -0.018 4.018 14 N -0.932 5.932 15 Si 1.105 2.895 16 H -0.287 1.287 17 H -0.271 1.271 18 H -0.270 1.270 19 C -0.167 4.167 20 C -0.167 4.167 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.152 4.152 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 -11.575 -1.410 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.092 4.092 5 H 0.133 0.867 6 C 0.300 3.700 7 O -0.441 6.441 8 O -0.254 6.254 9 C 0.049 3.951 10 C -0.019 4.019 11 C -0.602 4.602 12 H 0.064 0.936 13 C -0.217 4.217 14 N -0.568 5.568 15 Si 0.928 3.072 16 H -0.213 1.213 17 H -0.197 1.197 18 H -0.196 1.196 19 C -0.204 4.204 20 C -0.205 4.205 21 C -0.094 4.094 22 C -0.211 4.211 23 C -0.210 4.210 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.119 -11.439 -0.231 15.954 hybrid contribution -1.056 1.239 -1.010 1.916 sum -12.175 -10.200 -1.241 15.931 Atomic orbital electron populations 1.21763 0.95045 1.02365 1.01741 1.21573 0.96450 0.94105 1.03476 1.21546 0.90295 0.99302 1.02706 1.21400 0.97971 0.87592 1.02255 0.86708 1.24659 0.79031 0.93892 0.72399 1.90562 1.58219 1.48451 1.46858 1.86606 1.33839 1.32598 1.72378 1.22459 0.94780 0.78917 0.98961 1.19153 0.92550 0.96472 0.93740 1.21348 1.16772 1.04268 1.17849 0.93630 1.27023 1.03008 0.98927 0.92761 1.70876 1.31531 1.16304 1.38075 0.83087 0.73121 0.74587 0.76421 1.21305 1.19650 1.19572 1.22951 1.01531 1.03289 0.92630 1.22723 1.00147 0.92367 1.05229 1.21173 0.95915 1.00755 0.91553 1.21934 0.95194 1.01278 1.02727 1.21965 1.02265 0.98133 0.98599 0.92886 0.93076 0.91270 0.90789 0.90193 0.91476 0.92448 0.95112 0.93363 0.92903 0.89365 0.88996 0.89790 0.90814 0.85526 0.95695 0.91147 0.91505 0.90805 0.91052 0.96500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.44 16 2 C -0.12 -1.87 5.68 30.59 0.17 -1.69 16 3 C -0.10 -2.32 4.02 30.59 0.12 -2.19 16 4 C -0.07 -2.03 2.09 -11.54 -0.02 -2.05 16 5 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 6 C 0.45 17.85 5.25 71.24 0.37 18.22 16 7 O -0.55 -23.96 15.04 21.95 0.33 -23.63 16 8 O -0.34 -15.43 8.88 -51.39 -0.46 -15.88 16 9 C 0.12 6.01 5.38 71.98 0.39 6.40 16 10 C -0.02 -0.93 1.22 -52.93 -0.06 -1.00 16 11 C -0.56 -31.22 8.55 25.60 0.22 -31.00 16 12 H 0.05 2.55 7.83 -2.91 -0.02 2.52 16 13 C -0.02 -0.99 5.38 84.66 0.46 -0.53 16 14 N -0.93 -55.82 13.56 21.45 0.29 -55.53 16 15 Si 1.11 49.70 29.91 68.60 2.05 51.75 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 C -0.17 -7.11 9.92 30.62 0.30 -6.80 16 20 C -0.17 -7.66 8.88 30.62 0.27 -7.39 16 21 C -0.08 -1.92 2.55 -10.79 -0.03 -1.94 16 22 C -0.15 -4.71 8.83 71.98 0.64 -4.07 16 23 C -0.15 -4.24 8.54 71.98 0.61 -3.62 16 24 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.07 6.42 -2.38 -0.02 1.06 16 29 H 0.07 1.68 6.39 -2.38 -0.02 1.67 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 1.67 7.58 -2.39 -0.02 1.65 16 32 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 33 H 0.26 15.76 6.08 -92.71 -0.56 15.19 16 34 H 0.09 3.67 8.14 -2.38 -0.02 3.65 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.08 3.53 8.14 -2.38 -0.02 3.51 16 37 H 0.07 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.13 2.23 6.28 -2.38 -0.01 2.21 16 39 H 0.02 0.99 6.83 -2.39 -0.02 0.98 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 1.78 6.75 -2.38 -0.02 1.76 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.02 0.59 6.39 -2.39 -0.02 0.57 16 Total: -1.00 -66.65 349.23 7.52 -59.12 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.15 Total: 23.29 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 4.16 Total: -39.12 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.29 Total: -55.53 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.13 Total: -39.51 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.75 kcal Total: -66.65 7.52 -59.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764654250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.480 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds